HEADER TRANSFERASE/DNA BINDING PROTEIN 26-MAR-17 5VAH TITLE CRYSTAL STRUCTURE OF ATXR5 SET DOMAIN IN COMPLEX WITH HISTONE H3 DI- TITLE 2 METHYLATED ON R26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 146-374; COMPND 5 EC: 2.1.1.43; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 22-36; COMPND 11 SYNONYM: HISTONE H3.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 GENE: ATXR5, RCOM_1460410; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702 KEYWDS HISTONE, NUCLEOSOME, METHYLTRANSFERASES, TRANSFERASE-DNA BINDING KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.BERGAMIN,S.SARVAN,J.MALETTE,M.ERAM,S.YEUNG,V.MONGEON,M.JOSHI, AUTHOR 2 J.S.BRUNZELLE,S.D.MICHAELS,A.BLAIS,M.VEDADI,J.-F.COUTURE REVDAT 6 06-NOV-24 5VAH 1 REMARK REVDAT 5 15-NOV-23 5VAH 1 REMARK REVDAT 4 04-OCT-23 5VAH 1 SEQRES REVDAT 3 20-SEP-17 5VAH 1 JRNL REVDAT 2 19-APR-17 5VAH 1 JRNL REVDAT 1 05-APR-17 5VAH 0 JRNL AUTH E.BERGAMIN,S.SARVAN,J.MALETTE,M.S.ERAM,S.YEUNG,V.MONGEON, JRNL AUTH 2 M.JOSHI,J.S.BRUNZELLE,S.D.MICHAELS,A.BLAIS,M.VEDADI, JRNL AUTH 3 J.F.COUTURE JRNL TITL MOLECULAR BASIS FOR THE METHYLATION SPECIFICITY OF ATXR5 FOR JRNL TITL 2 HISTONE H3. JRNL REF NUCLEIC ACIDS RES. V. 45 6375 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28383693 JRNL DOI 10.1093/NAR/GKX224 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 19507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2892 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2681 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2758 REMARK 3 BIN R VALUE (WORKING SET) : 0.2636 REMARK 3 BIN FREE R VALUE : 0.3648 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.63 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59690 REMARK 3 B22 (A**2) : -6.82310 REMARK 3 B33 (A**2) : 3.22620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.74530 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.332 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.475 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.289 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.470 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.291 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3527 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4781 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1200 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 90 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 551 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3527 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 480 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4028 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% POLYPROPYLENE GLYCOL 400, 5% DMSO, REMARK 280 0.1 M HEPES-NAOH (PH 6.0), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.60050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.59400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.60050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.59400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 146 REMARK 465 ARG A 147 REMARK 465 ARG A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 LEU A 152 REMARK 465 VAL A 153 REMARK 465 TYR A 154 REMARK 465 GLN A 155 REMARK 465 LYS A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ARG A 159 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ARG B 146 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 SER B 149 REMARK 465 GLY B 150 REMARK 465 SER B 151 REMARK 465 LEU B 152 REMARK 465 VAL B 153 REMARK 465 TYR B 154 REMARK 465 GLN B 155 REMARK 465 LYS B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 SER B 198 REMARK 465 SER B 199 REMARK 465 ALA C 21 REMARK 465 THR C 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 175 CE NZ REMARK 470 SER A 205 OG REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 SER A 248 OG REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 259 CG CD OE1 NE2 REMARK 470 LYS A 261 CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 HIS A 281 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 SER A 297 OG REMARK 470 SER A 298 OG REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 ASP A 323 CG OD1 OD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 160 CG CD NE CZ NH1 NH2 REMARK 470 SER B 182 OG REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 SER B 205 OG REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 GLN B 259 CG CD OE1 NE2 REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 SER B 298 OG REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 LEU B 322 CG CD1 CD2 REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 LYS C 23 CG CD CE NZ REMARK 470 LYS D 23 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 201 -91.41 -108.22 REMARK 500 MET A 263 -3.23 79.91 REMARK 500 PRO A 304 33.89 -90.40 REMARK 500 TYR A 364 -65.37 -139.61 REMARK 500 MET B 201 -127.15 -121.78 REMARK 500 PRO B 304 43.90 -93.41 REMARK 500 ASN B 309 -158.43 -133.29 REMARK 500 ASN B 362 53.98 -116.56 REMARK 500 TYR B 364 -72.52 -143.06 REMARK 500 ALA D 24 124.02 72.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 575 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 12.58 ANGSTROMS REMARK 525 HOH B 586 DISTANCE = 6.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VAC RELATED DB: PDB REMARK 900 RELATED ID: 5VAB RELATED DB: PDB DBREF 5VAH A 146 374 UNP B9RU15 ATXR5_RICCO 146 374 DBREF 5VAH B 146 374 UNP B9RU15 ATXR5_RICCO 146 374 DBREF 5VAH C 21 35 UNP P59226 H32_ARATH 22 36 DBREF 5VAH D 21 35 UNP P59226 H32_ARATH 22 36 SEQADV 5VAH SER A 298 UNP B9RU15 LYS 298 CONFLICT SEQADV 5VAH ALA A 324 UNP B9RU15 GLY 324 CONFLICT SEQADV 5VAH SER B 298 UNP B9RU15 LYS 298 CONFLICT SEQADV 5VAH ALA B 324 UNP B9RU15 GLY 324 CONFLICT SEQRES 1 A 229 ARG ARG ARG SER GLY SER LEU VAL TYR GLN LYS ARG ARG SEQRES 2 A 229 ARG ARG LEU LEU PRO PHE VAL SER SER GLU ASP PRO ALA SEQRES 3 A 229 GLN ARG LEU LYS GLN MET GLY THR LEU ALA SER ALA LEU SEQRES 4 A 229 THR GLU LEU GLN MET GLU PHE SER ASP ASP LEU THR TYR SEQRES 5 A 229 SER SER GLY MET ALA PRO ARG SER ALA ASN GLN ALA ARG SEQRES 6 A 229 PHE GLU GLU GLY GLY MET GLN VAL LEU THR LYS GLU ASP SEQRES 7 A 229 ILE GLU THR LEU GLU GLN CYS ARG ALA MET CYS LYS ARG SEQRES 8 A 229 GLY ASP CYS PRO PRO LEU LEU VAL VAL PHE ASP SER ARG SEQRES 9 A 229 GLU GLY PHE THR VAL GLU ALA ASP GLY GLN ILE LYS ASP SEQRES 10 A 229 MET THR PHE ILE ALA GLU TYR THR GLY ASP VAL ASP TYR SEQRES 11 A 229 ILE ARG ASN ARG GLU HIS ASP ASP CYS ASP SER MET MET SEQRES 12 A 229 THR LEU LEU LEU ALA LYS ASP PRO SER SER SER LEU VAL SEQRES 13 A 229 ILE CYS PRO ASP LYS ARG GLY ASN ILE ALA ARG PHE ILE SEQRES 14 A 229 SER GLY ILE ASN ASN HIS THR LEU ASP ALA LYS LYS LYS SEQRES 15 A 229 GLN ASN CYS LYS CYS VAL ARG TYR SER VAL ASN GLY GLU SEQRES 16 A 229 CYS ARG VAL PHE LEU VAL ALA THR ARG ASP ILE ALA LYS SEQRES 17 A 229 GLY GLU ARG LEU TYR TYR ASP TYR ASN GLY TYR GLU HIS SEQRES 18 A 229 GLU TYR PRO THR GLN HIS PHE VAL SEQRES 1 B 229 ARG ARG ARG SER GLY SER LEU VAL TYR GLN LYS ARG ARG SEQRES 2 B 229 ARG ARG LEU LEU PRO PHE VAL SER SER GLU ASP PRO ALA SEQRES 3 B 229 GLN ARG LEU LYS GLN MET GLY THR LEU ALA SER ALA LEU SEQRES 4 B 229 THR GLU LEU GLN MET GLU PHE SER ASP ASP LEU THR TYR SEQRES 5 B 229 SER SER GLY MET ALA PRO ARG SER ALA ASN GLN ALA ARG SEQRES 6 B 229 PHE GLU GLU GLY GLY MET GLN VAL LEU THR LYS GLU ASP SEQRES 7 B 229 ILE GLU THR LEU GLU GLN CYS ARG ALA MET CYS LYS ARG SEQRES 8 B 229 GLY ASP CYS PRO PRO LEU LEU VAL VAL PHE ASP SER ARG SEQRES 9 B 229 GLU GLY PHE THR VAL GLU ALA ASP GLY GLN ILE LYS ASP SEQRES 10 B 229 MET THR PHE ILE ALA GLU TYR THR GLY ASP VAL ASP TYR SEQRES 11 B 229 ILE ARG ASN ARG GLU HIS ASP ASP CYS ASP SER MET MET SEQRES 12 B 229 THR LEU LEU LEU ALA LYS ASP PRO SER SER SER LEU VAL SEQRES 13 B 229 ILE CYS PRO ASP LYS ARG GLY ASN ILE ALA ARG PHE ILE SEQRES 14 B 229 SER GLY ILE ASN ASN HIS THR LEU ASP ALA LYS LYS LYS SEQRES 15 B 229 GLN ASN CYS LYS CYS VAL ARG TYR SER VAL ASN GLY GLU SEQRES 16 B 229 CYS ARG VAL PHE LEU VAL ALA THR ARG ASP ILE ALA LYS SEQRES 17 B 229 GLY GLU ARG LEU TYR TYR ASP TYR ASN GLY TYR GLU HIS SEQRES 18 B 229 GLU TYR PRO THR GLN HIS PHE VAL SEQRES 1 C 15 ALA THR LYS ALA ALA DA2 LYS SER ALA PRO ALA THR GLY SEQRES 2 C 15 GLY VAL SEQRES 1 D 15 ALA THR LYS ALA ALA DA2 LYS SER ALA PRO ALA THR GLY SEQRES 2 D 15 GLY VAL MODRES 5VAH DA2 C 26 ARG MODIFIED RESIDUE MODRES 5VAH DA2 D 26 ARG MODIFIED RESIDUE HET DA2 C 26 13 HET DA2 D 26 13 HET SAH A 401 26 HET SAH B 401 26 HETNAM DA2 NG,NG-DIMETHYL-L-ARGININE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETSYN DA2 ADMA FORMUL 3 DA2 2(C8 H18 N4 O2) FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 ASP A 169 LEU A 187 1 19 HELIX 2 AA2 PRO A 203 ASN A 207 5 5 HELIX 3 AA3 GLN A 208 GLU A 212 5 5 HELIX 4 AA4 THR A 220 GLY A 237 1 18 HELIX 5 AA5 ARG A 277 ARG A 279 5 3 HELIX 6 AA6 ASN A 309 ILE A 314 5 6 HELIX 7 AA7 ASP A 323 GLN A 328 5 6 HELIX 8 AA8 ASP B 169 LEU B 187 1 19 HELIX 9 AA9 GLN B 208 GLU B 212 5 5 HELIX 10 AB1 THR B 220 GLY B 237 1 18 HELIX 11 AB2 ARG B 277 ARG B 279 5 3 HELIX 12 AB3 ASP B 295 SER B 298 5 4 HELIX 13 AB4 ASN B 309 ILE B 314 5 6 HELIX 14 AB5 ASP B 323 GLN B 328 5 6 SHEET 1 AA1 2 GLU A 190 PHE A 191 0 SHEET 2 AA1 2 ARG A 307 GLY A 308 1 O GLY A 308 N GLU A 190 SHEET 1 AA2 4 LEU A 195 THR A 196 0 SHEET 2 AA2 4 GLY A 271 TYR A 275 1 O VAL A 273 N THR A 196 SHEET 3 AA2 4 LEU A 300 CYS A 303 -1 O CYS A 303 N ASP A 272 SHEET 4 AA2 4 MET A 288 LEU A 291 -1 N MET A 288 O ILE A 302 SHEET 1 AA3 2 LEU A 242 ASP A 247 0 SHEET 2 AA3 2 GLY A 251 ALA A 256 -1 O GLY A 251 N ASP A 247 SHEET 1 AA4 3 PHE A 265 GLU A 268 0 SHEET 2 AA4 3 GLU A 340 ALA A 347 -1 O LEU A 345 N ALA A 267 SHEET 3 AA4 3 CYS A 330 VAL A 337 -1 N VAL A 337 O GLU A 340 SHEET 1 AA5 2 SER A 315 GLY A 316 0 SHEET 2 AA5 2 TYR A 358 TYR A 359 1 O TYR A 359 N SER A 315 SHEET 1 AA6 2 GLU B 190 PHE B 191 0 SHEET 2 AA6 2 ARG B 307 GLY B 308 1 O GLY B 308 N GLU B 190 SHEET 1 AA7 5 LEU B 195 THR B 196 0 SHEET 2 AA7 5 GLY B 271 TYR B 275 1 O VAL B 273 N THR B 196 SHEET 3 AA7 5 LEU B 300 CYS B 303 -1 O VAL B 301 N ASP B 274 SHEET 4 AA7 5 MET B 287 LEU B 291 -1 N MET B 288 O ILE B 302 SHEET 5 AA7 5 DA2 D 26 LYS D 27 1 O LYS D 27 N THR B 289 SHEET 1 AA8 2 LEU B 242 ASP B 247 0 SHEET 2 AA8 2 GLY B 251 ALA B 256 -1 O GLY B 251 N ASP B 247 SHEET 1 AA9 3 PHE B 265 GLU B 268 0 SHEET 2 AA9 3 GLU B 340 ALA B 347 -1 O LEU B 345 N ALA B 267 SHEET 3 AA9 3 CYS B 330 VAL B 337 -1 N VAL B 333 O PHE B 344 SHEET 1 AB1 2 SER B 315 GLY B 316 0 SHEET 2 AB1 2 TYR B 358 TYR B 359 1 O TYR B 359 N SER B 315 LINK C ALA C 25 N DA2 C 26 1555 1555 1.33 LINK C DA2 C 26 N LYS C 27 1555 1555 1.33 LINK C ALA D 25 N DA2 D 26 1555 1555 1.29 LINK C DA2 D 26 N LYS D 27 1555 1555 1.37 SITE 1 AC1 15 LEU A 187 ARG A 249 GLU A 250 PHE A 252 SITE 2 AC1 15 ASP A 285 ARG A 312 PHE A 313 SER A 315 SITE 3 AC1 15 GLY A 316 TYR A 361 TYR A 368 PHE A 373 SITE 4 AC1 15 VAL A 374 HOH A 514 HOH A 540 SITE 1 AC2 16 ARG B 249 GLU B 250 GLY B 251 PHE B 252 SITE 2 AC2 16 ASP B 285 SER B 286 ARG B 312 PHE B 313 SITE 3 AC2 16 SER B 315 GLY B 316 TYR B 361 TYR B 368 SITE 4 AC2 16 PHE B 373 VAL B 374 HOH B 507 LYS D 27 CRYST1 101.201 87.188 74.022 90.00 127.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009881 0.000000 0.007684 0.00000 SCALE2 0.000000 0.011469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017114 0.00000 CONECT 3257 3262 CONECT 3260 3270 CONECT 3261 3270 CONECT 3262 3257 3263 CONECT 3263 3262 3264 3271 CONECT 3264 3263 3265 CONECT 3265 3264 3266 CONECT 3266 3265 3267 CONECT 3267 3266 3268 CONECT 3268 3267 3269 3270 CONECT 3269 3268 CONECT 3270 3260 3261 3268 CONECT 3271 3263 3272 3273 CONECT 3272 3271 CONECT 3273 3271 CONECT 3352 3357 CONECT 3355 3365 CONECT 3356 3365 CONECT 3357 3352 3358 CONECT 3358 3357 3359 3366 CONECT 3359 3358 3360 CONECT 3360 3359 3361 CONECT 3361 3360 3362 CONECT 3362 3361 3363 CONECT 3363 3362 3364 3365 CONECT 3364 3363 CONECT 3365 3355 3356 3363 CONECT 3366 3358 3367 3368 CONECT 3367 3366 CONECT 3368 3366 CONECT 3423 3424 CONECT 3424 3423 3425 3428 CONECT 3425 3424 3426 CONECT 3426 3425 3427 CONECT 3427 3426 3431 CONECT 3428 3424 3429 3430 CONECT 3429 3428 CONECT 3430 3428 CONECT 3431 3427 3432 CONECT 3432 3431 3433 3434 CONECT 3433 3432 3438 CONECT 3434 3432 3435 3436 CONECT 3435 3434 CONECT 3436 3434 3437 3438 CONECT 3437 3436 CONECT 3438 3433 3436 3439 CONECT 3439 3438 3440 3448 CONECT 3440 3439 3441 CONECT 3441 3440 3442 CONECT 3442 3441 3443 3448 CONECT 3443 3442 3444 3445 CONECT 3444 3443 CONECT 3445 3443 3446 CONECT 3446 3445 3447 CONECT 3447 3446 3448 CONECT 3448 3439 3442 3447 CONECT 3449 3450 CONECT 3450 3449 3451 3454 CONECT 3451 3450 3452 CONECT 3452 3451 3453 CONECT 3453 3452 3457 CONECT 3454 3450 3455 3456 CONECT 3455 3454 CONECT 3456 3454 CONECT 3457 3453 3458 CONECT 3458 3457 3459 3460 CONECT 3459 3458 3464 CONECT 3460 3458 3461 3462 CONECT 3461 3460 CONECT 3462 3460 3463 3464 CONECT 3463 3462 CONECT 3464 3459 3462 3465 CONECT 3465 3464 3466 3474 CONECT 3466 3465 3467 CONECT 3467 3466 3468 CONECT 3468 3467 3469 3474 CONECT 3469 3468 3470 3471 CONECT 3470 3469 CONECT 3471 3469 3472 CONECT 3472 3471 3473 CONECT 3473 3472 3474 CONECT 3474 3465 3468 3473 MASTER 374 0 4 14 27 0 8 6 3640 4 82 40 END