HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-MAR-17 5VAL TITLE BRAF IN COMPLEX WITH N-(3-(TERT-BUTYL)PHENYL)-4-METHYL-3-(6- TITLE 2 MORPHOLINOPYRIMIDIN-4-YL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 445-723; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS BRAF SERINE/THREONINE-PROTEIN KINASE B-RAF, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MAMO,B.A.APPLETON REVDAT 3 06-MAR-24 5VAL 1 REMARK REVDAT 2 05-JUL-17 5VAL 1 JRNL REVDAT 1 28-JUN-17 5VAL 0 JRNL AUTH G.A.NISHIGUCHI,A.RICO,H.TANNER,R.J.AVERSA,B.R.TAFT, JRNL AUTH 2 S.SUBRAMANIAN,L.SETTI,M.T.BURGER,L.WAN,V.TAMEZ,A.SMITH, JRNL AUTH 3 Y.LOU,P.A.BARSANTI,B.A.APPLETON,M.MAMO,L.TANDESKE,I.DIX, JRNL AUTH 4 J.E.TELLEW,S.HUANG,L.A.MATHEWS GRINER,V.G.COOKE, JRNL AUTH 5 A.VAN ABBEMA,H.MERRITT,S.MA,K.GAMPA,F.FENG,J.YUAN,Y.WANG, JRNL AUTH 6 J.R.HALING,S.VAZIRI,M.HEKMAT-NEJAD,J.M.JANSEN,V.POLYAKOV, JRNL AUTH 7 R.ZANG,V.SETHURAMAN,P.AMIRI,M.SINGH,E.LEES,W.SHAO, JRNL AUTH 8 D.D.STUART,M.P.DILLON,S.RAMURTHY JRNL TITL DESIGN AND DISCOVERY OF JRNL TITL 2 N-(2-METHYL-5'-MORPHOLINO-6'-((TETRAHYDRO-2H-PYRAN-4-YL)OXY) JRNL TITL 3 -[3,3'-BIPYRIDIN]-5-YL)-3-(TRIFLUOROMETHYL)BENZAMIDE JRNL TITL 4 (RAF709): A POTENT, SELECTIVE, AND EFFICACIOUS RAF INHIBITOR JRNL TITL 5 TARGETING RAS MUTANT CANCERS. JRNL REF J. MED. CHEM. V. 60 4869 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28557458 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01862 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 33658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3013 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1980 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2847 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.51 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48410 REMARK 3 B22 (A**2) : -1.48410 REMARK 3 B33 (A**2) : 2.96810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.230 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.215 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.179 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4191 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5664 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1462 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 645 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4191 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 538 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4990 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|449 - A|491 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.1134 46.4119 -15.6343 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: -0.0423 REMARK 3 T33: -0.0463 T12: -0.0094 REMARK 3 T13: -0.0352 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.2000 L22: 0.6060 REMARK 3 L33: 1.4462 L12: 0.7447 REMARK 3 L13: -0.0129 L23: 1.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: 0.3005 S13: 0.1000 REMARK 3 S21: -0.1847 S22: -0.0823 S23: 0.2366 REMARK 3 S31: -0.2341 S32: -0.0825 S33: 0.1503 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|492 - A|507 } REMARK 3 ORIGIN FOR THE GROUP (A): -15.4085 53.5913 -4.7506 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: -0.0960 REMARK 3 T33: -0.0406 T12: -0.0492 REMARK 3 T13: 0.0327 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 0.9056 L22: 1.7940 REMARK 3 L33: 0.4913 L12: 1.7532 REMARK 3 L13: 0.3580 L23: 0.0958 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.2106 S13: 0.2869 REMARK 3 S21: -0.0442 S22: -0.0874 S23: 0.0669 REMARK 3 S31: -0.3766 S32: -0.0074 S33: 0.1147 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|508 - A|596 } REMARK 3 ORIGIN FOR THE GROUP (A): -25.2844 37.7841 -0.2292 REMARK 3 T TENSOR REMARK 3 T11: -0.0811 T22: -0.0574 REMARK 3 T33: 0.0095 T12: -0.0071 REMARK 3 T13: 0.0285 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.2473 L22: 1.0105 REMARK 3 L33: 2.3378 L12: -0.3882 REMARK 3 L13: -1.6861 L23: 0.3910 REMARK 3 S TENSOR REMARK 3 S11: -0.3169 S12: 0.1229 S13: -0.2222 REMARK 3 S21: -0.0007 S22: 0.1136 S23: 0.2752 REMARK 3 S31: 0.1798 S32: -0.1338 S33: 0.2033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|616 - A|621 } REMARK 3 ORIGIN FOR THE GROUP (A): -35.3782 48.6803 8.7661 REMARK 3 T TENSOR REMARK 3 T11: -0.0357 T22: -0.0386 REMARK 3 T33: 0.0283 T12: 0.0523 REMARK 3 T13: 0.0837 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.7677 L22: 0.0000 REMARK 3 L33: 0.0737 L12: -0.1569 REMARK 3 L13: -0.0366 L23: -0.2087 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.0693 S13: 0.1499 REMARK 3 S21: 0.0192 S22: -0.0136 S23: 0.0092 REMARK 3 S31: -0.0246 S32: -0.0395 S33: 0.0240 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|622 - A|706 } REMARK 3 ORIGIN FOR THE GROUP (A): -35.6931 44.6616 15.7746 REMARK 3 T TENSOR REMARK 3 T11: -0.0322 T22: -0.0527 REMARK 3 T33: -0.0372 T12: 0.0467 REMARK 3 T13: 0.0916 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 4.6364 L22: 0.8809 REMARK 3 L33: 1.1428 L12: -2.2682 REMARK 3 L13: -2.3690 L23: 0.8001 REMARK 3 S TENSOR REMARK 3 S11: -0.3395 S12: -0.3573 S13: -0.2406 REMARK 3 S21: 0.2860 S22: 0.1614 S23: 0.2510 REMARK 3 S31: 0.1501 S32: 0.1194 S33: 0.1781 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|707 - A|720 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.8784 30.1223 17.4999 REMARK 3 T TENSOR REMARK 3 T11: 0.0576 T22: -0.0032 REMARK 3 T33: -0.0622 T12: 0.1520 REMARK 3 T13: 0.1520 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0855 REMARK 3 L33: 0.0059 L12: -2.8907 REMARK 3 L13: 0.7159 L23: -2.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.0656 S13: -0.3042 REMARK 3 S21: 0.1399 S22: 0.0357 S23: -0.0490 REMARK 3 S31: 0.1721 S32: -0.0145 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|449 - B|475 } REMARK 3 ORIGIN FOR THE GROUP (A): -3.5940 27.3071 7.6008 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0032 REMARK 3 T33: -0.0709 T12: 0.1127 REMARK 3 T13: 0.0320 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 1.8554 L22: 1.5229 REMARK 3 L33: 1.1393 L12: -0.5429 REMARK 3 L13: 1.0333 L23: 1.1265 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: -0.3218 S13: -0.2885 REMARK 3 S21: 0.0736 S22: -0.0631 S23: -0.0608 REMARK 3 S31: 0.3614 S32: 0.4617 S33: 0.0915 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|476 - B|491 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.6966 28.1008 7.8549 REMARK 3 T TENSOR REMARK 3 T11: -0.0596 T22: 0.0480 REMARK 3 T33: -0.0566 T12: 0.0745 REMARK 3 T13: -0.0177 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.1731 L22: 1.4073 REMARK 3 L33: 1.9209 L12: -0.7726 REMARK 3 L13: -0.5571 L23: -1.6874 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.0522 S13: -0.0559 REMARK 3 S21: 0.3347 S22: -0.1658 S23: -0.0142 REMARK 3 S31: 0.2648 S32: 0.4049 S33: 0.1635 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|492 - B|507 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.2919 33.0595 -2.4333 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: 0.2191 REMARK 3 T33: -0.1516 T12: 0.0160 REMARK 3 T13: 0.0455 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.6703 L22: 1.4749 REMARK 3 L33: 0.2887 L12: 2.2094 REMARK 3 L13: 0.7654 L23: -1.5236 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: -0.1151 S13: 0.0456 REMARK 3 S21: -0.1495 S22: -0.0228 S23: -0.1474 REMARK 3 S31: 0.1197 S32: 0.4161 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|508 - B|587 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.3291 23.2064 -8.4778 REMARK 3 T TENSOR REMARK 3 T11: -0.0487 T22: -0.0393 REMARK 3 T33: 0.0024 T12: 0.0068 REMARK 3 T13: 0.0567 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9497 L22: 1.7538 REMARK 3 L33: 1.6948 L12: -0.0140 REMARK 3 L13: -0.4652 L23: 1.0694 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: -0.0403 S13: -0.1962 REMARK 3 S21: 0.0911 S22: -0.0534 S23: 0.0965 REMARK 3 S31: 0.1627 S32: -0.0443 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { B|588 - B|597 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.4342 21.9451 -7.0397 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: -0.0532 REMARK 3 T33: -0.0021 T12: 0.0203 REMARK 3 T13: 0.0249 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 3.4476 REMARK 3 L33: 3.2034 L12: 0.8015 REMARK 3 L13: 0.1967 L23: 0.3451 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0266 S13: -0.0428 REMARK 3 S21: 0.2426 S22: 0.0655 S23: -0.0306 REMARK 3 S31: 0.2554 S32: 0.0062 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { B|615 - B|706 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.1775 13.4001 -23.6134 REMARK 3 T TENSOR REMARK 3 T11: -0.0587 T22: -0.0176 REMARK 3 T33: -0.0329 T12: -0.0127 REMARK 3 T13: 0.0362 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 1.6839 L22: 3.8467 REMARK 3 L33: 0.8724 L12: -1.9292 REMARK 3 L13: -0.4514 L23: 0.9787 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.1039 S13: -0.1582 REMARK 3 S21: -0.1454 S22: -0.1149 S23: 0.1275 REMARK 3 S31: -0.0098 S32: -0.0871 S33: 0.0797 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { B|707 - B|721 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.5210 25.1103 -26.5782 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: -0.0274 REMARK 3 T33: -0.0413 T12: 0.0421 REMARK 3 T13: -0.0169 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 0.5493 L22: 0.0000 REMARK 3 L33: 2.1638 L12: -2.5406 REMARK 3 L13: 2.4816 L23: -2.2724 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.1250 S13: 0.0400 REMARK 3 S21: -0.0616 S22: 0.0384 S23: 0.3077 REMARK 3 S31: -0.1095 S32: -0.0876 S33: -0.0499 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: { A|801 - A|801 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.0911 43.6048 -5.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: -0.0161 REMARK 3 T33: -0.0269 T12: -0.0253 REMARK 3 T13: -0.0147 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.1427 L22: 0.7216 REMARK 3 L33: 0.3734 L12: -1.1638 REMARK 3 L13: 0.4453 L23: -0.4784 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0248 S13: -0.0301 REMARK 3 S21: -0.0245 S22: 0.0229 S23: 0.0359 REMARK 3 S31: 0.0080 S32: -0.0179 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: { B|801 - B|801 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.6952 25.0539 -3.1275 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: -0.0082 REMARK 3 T33: -0.0007 T12: 0.0286 REMARK 3 T13: -0.0207 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.7819 L22: 0.7306 REMARK 3 L33: 0.5875 L12: -1.1526 REMARK 3 L13: 0.9887 L23: -0.2205 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.0139 S13: -0.0638 REMARK 3 S21: -0.0224 S22: 0.0731 S23: 0.0024 REMARK 3 S31: -0.0021 S32: 0.0556 S33: -0.0664 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 47.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.4, 12% PEG8000, AND REMARK 280 100MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.76850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.06050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.06050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.88425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.06050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.06050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.65275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.06050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.06050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.88425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.06050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.06050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.65275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.76850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 443 REMARK 465 SER A 444 REMARK 465 ASP A 445 REMARK 465 LEU A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 VAL A 600 REMARK 465 LYS A 601 REMARK 465 SER A 602 REMARK 465 ARG A 603 REMARK 465 TRP A 604 REMARK 465 SER A 605 REMARK 465 GLY A 606 REMARK 465 SER A 607 REMARK 465 HIS A 608 REMARK 465 GLN A 609 REMARK 465 PHE A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 GLY A 615 REMARK 465 GLN A 628 REMARK 465 ASP A 629 REMARK 465 LEU A 721 REMARK 465 PRO A 722 REMARK 465 LYS A 723 REMARK 465 GLY B 443 REMARK 465 SER B 444 REMARK 465 ASP B 445 REMARK 465 SER B 446 REMARK 465 SER B 447 REMARK 465 ALA B 598 REMARK 465 THR B 599 REMARK 465 VAL B 600 REMARK 465 LYS B 601 REMARK 465 SER B 602 REMARK 465 ARG B 603 REMARK 465 TRP B 604 REMARK 465 SER B 605 REMARK 465 GLY B 606 REMARK 465 SER B 607 REMARK 465 HIS B 608 REMARK 465 GLN B 609 REMARK 465 PHE B 610 REMARK 465 GLU B 611 REMARK 465 GLN B 612 REMARK 465 LEU B 613 REMARK 465 SER B 614 REMARK 465 GLN B 628 REMARK 465 ASP B 629 REMARK 465 LYS B 630 REMARK 465 PRO B 722 REMARK 465 LYS B 723 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 449 CG OD1 OD2 REMARK 470 MET A 627 CG SD CE REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LYS A 687 CG CD CE NZ REMARK 470 ASN B 486 CG OD1 ND2 REMARK 470 ASN B 631 CG OD1 ND2 REMARK 470 LYS B 687 CG CD CE NZ REMARK 470 ARG B 691 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 467 -109.84 45.30 REMARK 500 TRP A 476 93.09 -173.60 REMARK 500 ARG A 575 -12.33 80.65 REMARK 500 ASP A 576 39.29 -147.67 REMARK 500 LEU A 588 -57.26 -131.26 REMARK 500 ARG A 682 152.53 -48.00 REMARK 500 TRP B 476 93.33 -173.66 REMARK 500 ARG B 575 -12.76 81.08 REMARK 500 ASP B 576 40.00 -148.12 REMARK 500 LEU B 588 -57.37 -131.02 REMARK 500 ARG B 682 152.55 -48.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 92D A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 92D B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VAM RELATED DB: PDB DBREF 5VAL A 445 723 UNP P15056 BRAF_HUMAN 445 723 DBREF 5VAL B 445 723 UNP P15056 BRAF_HUMAN 445 723 SEQADV 5VAL GLY A 443 UNP P15056 EXPRESSION TAG SEQADV 5VAL SER A 444 UNP P15056 EXPRESSION TAG SEQADV 5VAL GLY B 443 UNP P15056 EXPRESSION TAG SEQADV 5VAL SER B 444 UNP P15056 EXPRESSION TAG SEQRES 1 A 281 GLY SER ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY SEQRES 2 A 281 GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE SEQRES 3 A 281 GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA SEQRES 4 A 281 VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN SEQRES 5 A 281 LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS SEQRES 6 A 281 THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER SEQRES 7 A 281 THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU SEQRES 8 A 281 GLY SER SER LEU TYR HIS HIS LEU HIS ILE ILE GLU THR SEQRES 9 A 281 LYS PHE GLU MET ILE LYS LEU ILE ASP ILE ALA ARG GLN SEQRES 10 A 281 THR ALA GLN GLY MET ASP TYR LEU HIS ALA LYS SER ILE SEQRES 11 A 281 ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS SEQRES 12 A 281 GLU ASP LEU THR VAL LYS ILE GLY ASP PHE GLY LEU ALA SEQRES 13 A 281 THR VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU SEQRES 14 A 281 GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL SEQRES 15 A 281 ILE ARG MET GLN ASP LYS ASN PRO TYR SER PHE GLN SER SEQRES 16 A 281 ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET SEQRES 17 A 281 THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP SEQRES 18 A 281 GLN ILE ILE PHE MET VAL GLY ARG GLY TYR LEU SER PRO SEQRES 19 A 281 ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ALA MET SEQRES 20 A 281 LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP SEQRES 21 A 281 GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SER ILE GLU SEQRES 22 A 281 LEU LEU ALA ARG SER LEU PRO LYS SEQRES 1 B 281 GLY SER ASP SER SER ASP ASP TRP GLU ILE PRO ASP GLY SEQRES 2 B 281 GLN ILE THR VAL GLY GLN ARG ILE GLY SER GLY SER PHE SEQRES 3 B 281 GLY THR VAL TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA SEQRES 4 B 281 VAL LYS MET LEU ASN VAL THR ALA PRO THR PRO GLN GLN SEQRES 5 B 281 LEU GLN ALA PHE LYS ASN GLU VAL GLY VAL LEU ARG LYS SEQRES 6 B 281 THR ARG HIS VAL ASN ILE LEU LEU PHE MET GLY TYR SER SEQRES 7 B 281 THR LYS PRO GLN LEU ALA ILE VAL THR GLN TRP CYS GLU SEQRES 8 B 281 GLY SER SER LEU TYR HIS HIS LEU HIS ILE ILE GLU THR SEQRES 9 B 281 LYS PHE GLU MET ILE LYS LEU ILE ASP ILE ALA ARG GLN SEQRES 10 B 281 THR ALA GLN GLY MET ASP TYR LEU HIS ALA LYS SER ILE SEQRES 11 B 281 ILE HIS ARG ASP LEU LYS SER ASN ASN ILE PHE LEU HIS SEQRES 12 B 281 GLU ASP LEU THR VAL LYS ILE GLY ASP PHE GLY LEU ALA SEQRES 13 B 281 THR VAL LYS SER ARG TRP SER GLY SER HIS GLN PHE GLU SEQRES 14 B 281 GLN LEU SER GLY SER ILE LEU TRP MET ALA PRO GLU VAL SEQRES 15 B 281 ILE ARG MET GLN ASP LYS ASN PRO TYR SER PHE GLN SER SEQRES 16 B 281 ASP VAL TYR ALA PHE GLY ILE VAL LEU TYR GLU LEU MET SEQRES 17 B 281 THR GLY GLN LEU PRO TYR SER ASN ILE ASN ASN ARG ASP SEQRES 18 B 281 GLN ILE ILE PHE MET VAL GLY ARG GLY TYR LEU SER PRO SEQRES 19 B 281 ASP LEU SER LYS VAL ARG SER ASN CYS PRO LYS ALA MET SEQRES 20 B 281 LYS ARG LEU MET ALA GLU CYS LEU LYS LYS LYS ARG ASP SEQRES 21 B 281 GLU ARG PRO LEU PHE PRO GLN ILE LEU ALA SER ILE GLU SEQRES 22 B 281 LEU LEU ALA ARG SER LEU PRO LYS HET 92D A 801 32 HET 92D B 801 32 HETNAM 92D N-(3-TERT-BUTYLPHENYL)-4-METHYL-3-[6-(MORPHOLIN-4-YL) HETNAM 2 92D PYRIMIDIN-4-YL]BENZAMIDE FORMUL 3 92D 2(C26 H30 N4 O2) FORMUL 5 HOH *272(H2 O) HELIX 1 AA1 THR A 491 ARG A 506 1 16 HELIX 2 AA2 LEU A 537 ILE A 543 1 7 HELIX 3 AA3 GLU A 549 LYS A 570 1 22 HELIX 4 AA4 SER A 616 MET A 620 5 5 HELIX 5 AA5 ALA A 621 MET A 627 1 7 HELIX 6 AA6 SER A 634 GLY A 652 1 19 HELIX 7 AA7 ASN A 661 ARG A 671 1 11 HELIX 8 AA8 ASP A 677 VAL A 681 5 5 HELIX 9 AA9 PRO A 686 LEU A 697 1 12 HELIX 10 AB1 LYS A 700 ARG A 704 5 5 HELIX 11 AB2 LEU A 706 ARG A 719 1 14 HELIX 12 AB3 THR B 491 ARG B 506 1 16 HELIX 13 AB4 LEU B 537 ILE B 543 1 7 HELIX 14 AB5 GLU B 549 LYS B 570 1 22 HELIX 15 AB6 SER B 616 MET B 620 5 5 HELIX 16 AB7 ALA B 621 MET B 627 1 7 HELIX 17 AB8 SER B 634 GLY B 652 1 19 HELIX 18 AB9 ASN B 661 ARG B 671 1 11 HELIX 19 AC1 ASP B 677 VAL B 681 5 5 HELIX 20 AC2 PRO B 686 LEU B 697 1 12 HELIX 21 AC3 LYS B 700 ARG B 704 5 5 HELIX 22 AC4 LEU B 706 ARG B 719 1 14 SHEET 1 AA1 5 THR A 458 GLY A 466 0 SHEET 2 AA1 5 GLY A 469 LYS A 475 -1 O LYS A 473 N GLY A 460 SHEET 3 AA1 5 ASP A 479 MET A 484 -1 O VAL A 480 N GLY A 474 SHEET 4 AA1 5 ALA A 526 GLN A 530 -1 O ILE A 527 N LYS A 483 SHEET 5 AA1 5 PHE A 516 SER A 520 -1 N MET A 517 O VAL A 528 SHEET 1 AA2 3 GLY A 534 SER A 536 0 SHEET 2 AA2 3 ILE A 582 HIS A 585 -1 O LEU A 584 N SER A 535 SHEET 3 AA2 3 THR A 589 ILE A 592 -1 O LYS A 591 N PHE A 583 SHEET 1 AA3 5 THR B 458 SER B 465 0 SHEET 2 AA3 5 THR B 470 LYS B 475 -1 O LYS B 473 N GLY B 460 SHEET 3 AA3 5 ASP B 479 MET B 484 -1 O VAL B 480 N GLY B 474 SHEET 4 AA3 5 ALA B 526 GLN B 530 -1 O ILE B 527 N LYS B 483 SHEET 5 AA3 5 PHE B 516 SER B 520 -1 N MET B 517 O VAL B 528 SHEET 1 AA4 3 GLY B 534 SER B 536 0 SHEET 2 AA4 3 ILE B 582 HIS B 585 -1 O LEU B 584 N SER B 535 SHEET 3 AA4 3 THR B 589 ILE B 592 -1 O LYS B 591 N PHE B 583 CISPEP 1 LYS A 522 PRO A 523 0 2.66 CISPEP 2 LYS B 522 PRO B 523 0 2.80 SITE 1 AC1 16 VAL A 471 ALA A 481 LYS A 483 GLU A 501 SITE 2 AC1 16 VAL A 504 LEU A 505 LEU A 514 THR A 529 SITE 3 AC1 16 GLN A 530 TRP A 531 CYS A 532 HIS A 574 SITE 4 AC1 16 GLY A 593 ASP A 594 PHE A 595 HOH A 969 SITE 1 AC2 13 VAL B 471 ALA B 481 LYS B 483 GLU B 501 SITE 2 AC2 13 LEU B 514 THR B 529 GLN B 530 TRP B 531 SITE 3 AC2 13 CYS B 532 GLY B 593 ASP B 594 PHE B 595 SITE 4 AC2 13 HOH B 994 CRYST1 94.121 94.121 163.537 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006115 0.00000