HEADER APOPTOSIS 28-MAR-17 5VAY TITLE BCL-2 COMPLEX WITH BECLIN 1 T108D BH3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-2 -- BCL-2-LIKE PROTEIN 1 CHIMERA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BECLIN-1; COMPND 8 CHAIN: E, G, F, H; COMPND 9 SYNONYM: COILED-COIL MYOSIN-LIKE BCL2-INTERACTING PROTEIN,PROTEIN COMPND 10 GT197; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2, BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, BCL-2, AUTOPHAGY, BECLIN 1 EXPDTA X-RAY DIFFRACTION AUTHOR E.F.LEE,B.J.SMITH,S.YAO,W.D.FAIRLIE REVDAT 2 04-OCT-23 5VAY 1 REMARK REVDAT 1 04-APR-18 5VAY 0 JRNL AUTH E.F.LEE,B.J.SMITH,S.YAO,W.D.FAIRLIE JRNL TITL BCL-2 COMPLEX WITH BECLIN 1 PT108 BH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 71180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4510 - 5.2722 0.98 2803 147 0.1836 0.2272 REMARK 3 2 5.2722 - 4.1857 1.00 2784 147 0.1463 0.1870 REMARK 3 3 4.1857 - 3.6569 0.99 2739 144 0.1584 0.1892 REMARK 3 4 3.6569 - 3.3227 0.99 2696 142 0.1615 0.2112 REMARK 3 5 3.3227 - 3.0846 0.99 2754 145 0.1815 0.2590 REMARK 3 6 3.0846 - 2.9027 0.99 2720 143 0.1905 0.1950 REMARK 3 7 2.9027 - 2.7574 0.99 2707 142 0.1792 0.1958 REMARK 3 8 2.7574 - 2.6374 0.99 2705 143 0.1819 0.2558 REMARK 3 9 2.6374 - 2.5359 0.99 2713 143 0.1909 0.2152 REMARK 3 10 2.5359 - 2.4484 0.99 2697 141 0.1841 0.2120 REMARK 3 11 2.4484 - 2.3718 0.99 2731 144 0.1878 0.2561 REMARK 3 12 2.3718 - 2.3040 0.99 2671 141 0.1882 0.2512 REMARK 3 13 2.3040 - 2.2434 0.99 2706 142 0.1865 0.2724 REMARK 3 14 2.2434 - 2.1886 0.99 2685 142 0.1901 0.2378 REMARK 3 15 2.1886 - 2.1389 0.99 2705 142 0.1943 0.2444 REMARK 3 16 2.1389 - 2.0934 0.99 2704 142 0.2067 0.2402 REMARK 3 17 2.0934 - 2.0515 0.99 2685 142 0.2093 0.2818 REMARK 3 18 2.0515 - 2.0128 0.99 2704 142 0.2107 0.2261 REMARK 3 19 2.0128 - 1.9768 0.99 2653 139 0.2105 0.2686 REMARK 3 20 1.9768 - 1.9433 0.99 2724 144 0.2168 0.2769 REMARK 3 21 1.9433 - 1.9120 0.99 2684 141 0.2282 0.2821 REMARK 3 22 1.9120 - 1.8826 0.99 2681 141 0.2364 0.2603 REMARK 3 23 1.8826 - 1.8549 0.99 2660 140 0.2433 0.3130 REMARK 3 24 1.8549 - 1.8287 0.99 2712 143 0.2590 0.2999 REMARK 3 25 1.8287 - 1.8040 0.95 2598 137 0.2948 0.3165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5659 REMARK 3 ANGLE : 0.979 7680 REMARK 3 CHIRALITY : 0.041 792 REMARK 3 PLANARITY : 0.005 1008 REMARK 3 DIHEDRAL : 13.304 2030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 78.0455 8.1132 22.4968 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.1578 REMARK 3 T33: 0.2179 T12: -0.0042 REMARK 3 T13: 0.0183 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3118 L22: 0.0349 REMARK 3 L33: 0.2898 L12: 0.0440 REMARK 3 L13: 0.1203 L23: 0.0919 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.0878 S13: 0.0053 REMARK 3 S21: -0.0121 S22: 0.0007 S23: -0.0118 REMARK 3 S31: -0.0065 S32: 0.0215 S33: 0.0154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 6.5, 0.2M AMMONIUM REMARK 280 ACETATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.59600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ASP A 76 REMARK 465 VAL A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 PRO A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 THR A 88 REMARK 465 GLU A 89 REMARK 465 ARG A 207 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 73 REMARK 465 GLY B 74 REMARK 465 ASP B 75 REMARK 465 ASP B 76 REMARK 465 VAL B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 ASN B 80 REMARK 465 ARG B 81 REMARK 465 THR B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 87 REMARK 465 THR B 88 REMARK 465 MET B 206 REMARK 465 ARG B 207 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 ARG C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 74 REMARK 465 ASP C 75 REMARK 465 ASP C 76 REMARK 465 VAL C 77 REMARK 465 GLU C 78 REMARK 465 GLU C 79 REMARK 465 ASN C 80 REMARK 465 ARG C 81 REMARK 465 THR C 82 REMARK 465 GLU C 83 REMARK 465 ALA C 84 REMARK 465 PRO C 85 REMARK 465 GLU C 86 REMARK 465 GLY C 87 REMARK 465 THR C 88 REMARK 465 GLU C 89 REMARK 465 SER C 205 REMARK 465 MET C 206 REMARK 465 ARG C 207 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 ARG D 6 REMARK 465 THR D 7 REMARK 465 GLY D 8 REMARK 465 TYR D 9 REMARK 465 ALA D 73 REMARK 465 GLY D 74 REMARK 465 ASP D 75 REMARK 465 ASP D 76 REMARK 465 VAL D 77 REMARK 465 GLU D 78 REMARK 465 GLU D 79 REMARK 465 ASN D 80 REMARK 465 ARG D 81 REMARK 465 THR D 82 REMARK 465 GLU D 83 REMARK 465 ALA D 84 REMARK 465 PRO D 85 REMARK 465 GLU D 86 REMARK 465 GLY D 87 REMARK 465 THR D 88 REMARK 465 GLU D 89 REMARK 465 PRO D 204 REMARK 465 SER D 205 REMARK 465 MET D 206 REMARK 465 ARG D 207 REMARK 465 ASP E 105 REMARK 465 GLY E 106 REMARK 465 GLY E 107 REMARK 465 GLN E 129 REMARK 465 THR E 130 REMARK 465 ASP G 105 REMARK 465 GLY G 106 REMARK 465 GLY G 128 REMARK 465 GLN G 129 REMARK 465 THR G 130 REMARK 465 ASP F 105 REMARK 465 GLY F 106 REMARK 465 GLY F 107 REMARK 465 GLN F 129 REMARK 465 THR F 130 REMARK 465 ASP H 105 REMARK 465 GLY H 106 REMARK 465 GLY H 107 REMARK 465 GLY H 128 REMARK 465 GLN H 129 REMARK 465 THR H 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 113 CB REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 ARG A 164 CD NE CZ NH1 NH2 REMARK 470 SER A 205 OG REMARK 470 MET A 206 CG SD CE REMARK 470 ASP B 31 CB CG OD1 OD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 HIS B 120 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 175 CG CD1 CD2 REMARK 470 ARG C 26 CD NE CZ NH1 NH2 REMARK 470 ASP C 31 CB CG OD1 OD2 REMARK 470 ARG C 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 ASP D 31 CB CG OD1 OD2 REMARK 470 ARG D 109 CD NE REMARK 470 ARG D 110 NE CZ NH1 NH2 REMARK 470 GLN D 118 CG CD OE1 NE2 REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 183 NE CZ NH1 NH2 REMARK 470 ASP E 108 CG OD1 OD2 REMARK 470 GLU E 110 CG CD OE1 OE2 REMARK 470 ARG E 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU G 110 CG CD OE1 OE2 REMARK 470 ARG G 114 CD NE CZ NH1 NH2 REMARK 470 GLU F 110 CG CD OE1 OE2 REMARK 470 GLU H 110 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 394 O HOH A 395 1.78 REMARK 500 OG SER C 105 OE1 GLU C 152 2.11 REMARK 500 OH TYR A 28 OD1 ASN A 163 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 25 O HOH A 395 2746 1.85 REMARK 500 OD1 ASP B 191 O HOH B 346 2856 2.15 REMARK 500 O HOH D 323 O HOH D 332 2645 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 113 171.11 54.86 REMARK 500 GLU B 114 -83.62 48.53 REMARK 500 MET B 115 64.93 60.47 REMARK 500 ASP C 31 -82.18 -117.34 REMARK 500 ALA C 113 -163.50 -65.40 REMARK 500 ALA D 113 -176.12 -62.96 REMARK 500 ARG D 164 30.78 -99.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 114 MET B 115 -149.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 394 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 395 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 396 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 397 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A 398 DISTANCE = 9.20 ANGSTROMS REMARK 525 HOH D 336 DISTANCE = 9.26 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VAX RELATED DB: PDB REMARK 900 RELATED ID: 5VAU RELATED DB: PDB REMARK 900 RELATED ID: 5VB1 RELATED DB: PDB REMARK 900 RELATED ID: 5VB4 RELATED DB: PDB DBREF 5VAY A 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAY A 76 91 UNP Q07817 B2CL1_HUMAN 29 44 DBREF 5VAY A 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAY B 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAY B 76 91 UNP Q07817 B2CL1_HUMAN 29 44 DBREF 5VAY B 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAY C 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAY C 76 91 UNP Q07817 B2CL1_HUMAN 29 44 DBREF 5VAY C 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAY D 1 75 UNP P10415 BCL2_HUMAN 1 34 DBREF 5VAY D 76 91 UNP Q07817 B2CL1_HUMAN 29 44 DBREF 5VAY D 92 207 UNP P10415 BCL2_HUMAN 92 207 DBREF 5VAY E 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAY G 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAY F 105 130 UNP Q14457 BECN1_HUMAN 105 130 DBREF 5VAY H 105 130 UNP Q14457 BECN1_HUMAN 105 130 SEQADV 5VAY GLY A -1 UNP P10415 EXPRESSION TAG SEQADV 5VAY SER A 0 UNP P10415 EXPRESSION TAG SEQADV 5VAY GLY B -1 UNP P10415 EXPRESSION TAG SEQADV 5VAY SER B 0 UNP P10415 EXPRESSION TAG SEQADV 5VAY GLY C -1 UNP P10415 EXPRESSION TAG SEQADV 5VAY SER C 0 UNP P10415 EXPRESSION TAG SEQADV 5VAY GLY D -1 UNP P10415 EXPRESSION TAG SEQADV 5VAY SER D 0 UNP P10415 EXPRESSION TAG SEQADV 5VAY ASP E 108 UNP Q14457 THR 108 ENGINEERED MUTATION SEQADV 5VAY ASP G 108 UNP Q14457 THR 108 ENGINEERED MUTATION SEQADV 5VAY ASP F 108 UNP Q14457 THR 108 ENGINEERED MUTATION SEQADV 5VAY ASP H 108 UNP Q14457 THR 108 ENGINEERED MUTATION SEQRES 1 A 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 A 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 A 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 A 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 A 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 A 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 A 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 A 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 A 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 A 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 A 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 A 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 A 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 B 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 B 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 B 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 B 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 B 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 B 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 B 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 B 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 B 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 B 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 B 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 B 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 B 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 C 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 C 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 C 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 C 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 C 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 C 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 C 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 C 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 C 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 C 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 C 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 C 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 C 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 D 168 GLY SER MET ALA HIS ALA GLY ARG THR GLY TYR ASP ASN SEQRES 2 D 168 ARG GLU ILE VAL MET LYS TYR ILE HIS TYR LYS LEU SER SEQRES 3 D 168 GLN ARG GLY TYR GLU TRP ASP ALA GLY ASP ASP VAL GLU SEQRES 4 D 168 GLU ASN ARG THR GLU ALA PRO GLU GLY THR GLU SER GLU SEQRES 5 D 168 VAL VAL HIS LEU THR LEU ARG GLN ALA GLY ASP ASP PHE SEQRES 6 D 168 SER ARG ARG TYR ARG ARG ASP PHE ALA GLU MET SER SER SEQRES 7 D 168 GLN LEU HIS LEU THR PRO PHE THR ALA ARG GLY ARG PHE SEQRES 8 D 168 ALA THR VAL VAL GLU GLU LEU PHE ARG ASP GLY VAL ASN SEQRES 9 D 168 TRP GLY ARG ILE VAL ALA PHE PHE GLU PHE GLY GLY VAL SEQRES 10 D 168 MET CYS VAL GLU SER VAL ASN ARG GLU MET SER PRO LEU SEQRES 11 D 168 VAL ASP ASN ILE ALA LEU TRP MET THR GLU TYR LEU ASN SEQRES 12 D 168 ARG HIS LEU HIS THR TRP ILE GLN ASP ASN GLY GLY TRP SEQRES 13 D 168 ASP ALA PHE VAL GLU LEU TYR GLY PRO SER MET ARG SEQRES 1 E 26 ASP GLY GLY ASP MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 E 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 G 26 ASP GLY GLY ASP MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 G 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 F 26 ASP GLY GLY ASP MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 F 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 H 26 ASP GLY GLY ASP MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 H 26 VAL THR GLY ASP LEU PHE ASP ILE MET SER GLY GLN THR FORMUL 9 HOH *256(H2 O) HELIX 1 AA1 THR A 7 GLN A 25 1 19 HELIX 2 AA2 GLU A 91 PHE A 112 1 22 HELIX 3 AA3 GLU A 114 LEU A 119 5 6 HELIX 4 AA4 THR A 125 PHE A 138 1 14 HELIX 5 AA5 ASN A 143 ARG A 164 1 22 HELIX 6 AA6 PRO A 168 LEU A 185 1 18 HELIX 7 AA7 LEU A 185 ASN A 192 1 8 HELIX 8 AA8 GLY A 193 GLY A 203 1 11 HELIX 9 AA9 ARG B 6 GLN B 25 1 20 HELIX 10 AB1 SER B 90 ALA B 113 1 24 HELIX 11 AB2 THR B 122 PHE B 138 1 17 HELIX 12 AB3 ASN B 143 ARG B 164 1 22 HELIX 13 AB4 PRO B 168 LEU B 185 1 18 HELIX 14 AB5 LEU B 185 ASN B 192 1 8 HELIX 15 AB6 GLY B 193 GLY B 203 1 11 HELIX 16 AB7 ASP C 10 GLN C 25 1 16 HELIX 17 AB8 GLU C 91 PHE C 112 1 22 HELIX 18 AB9 GLU C 114 LEU C 119 5 6 HELIX 19 AC1 THR C 125 ARG C 139 1 15 HELIX 20 AC2 ASN C 143 ARG C 164 1 22 HELIX 21 AC3 PRO C 168 LEU C 185 1 18 HELIX 22 AC4 LEU C 185 ASN C 192 1 8 HELIX 23 AC5 GLY C 193 GLY C 203 1 11 HELIX 24 AC6 ASN D 11 GLN D 25 1 15 HELIX 25 AC7 GLU D 91 PHE D 112 1 22 HELIX 26 AC8 GLU D 114 LEU D 119 5 6 HELIX 27 AC9 THR D 125 ARG D 139 1 15 HELIX 28 AD1 ASN D 143 ARG D 164 1 22 HELIX 29 AD2 PRO D 168 LEU D 185 1 18 HELIX 30 AD3 LEU D 185 ASN D 192 1 8 HELIX 31 AD4 GLY D 193 GLY D 203 1 11 HELIX 32 AD5 MET E 109 GLY E 128 1 20 HELIX 33 AD6 ASP G 108 SER G 127 1 20 HELIX 34 AD7 MET F 109 GLY F 128 1 20 HELIX 35 AD8 MET H 109 MET H 126 1 18 CRYST1 85.205 53.192 91.413 90.00 108.39 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011736 0.000000 0.003903 0.00000 SCALE2 0.000000 0.018800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011528 0.00000