HEADER TRANSFERASE/DNA BINDING PROTEIN 29-MAR-17 5VBC TITLE CRYSTAL STRUCTURE OF ATXR5 IN COMPLEX WITH HISTONE H3.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SET DOMAIN RESIDUES 146-374; COMPND 5 EC: 2.1.1.43; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.1 PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 24-37; COMPND 11 SYNONYM: HISTONE H3.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988; SOURCE 5 GENE: ATXR5, RCOM_1460410; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702 KEYWDS NUCLEOSOME, METHYLATION, TRANSFERASE-DNA BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-F.COUTURE,E.BERGAMIN REVDAT 3 04-OCT-23 5VBC 1 REMARK REVDAT 2 20-SEP-17 5VBC 1 JRNL REVDAT 1 19-APR-17 5VBC 0 JRNL AUTH E.BERGAMIN,S.SARVAN,J.MALETTE,M.S.ERAM,S.YEUNG,V.MONGEON, JRNL AUTH 2 M.JOSHI,J.S.BRUNZELLE,S.D.MICHAELS,A.BLAIS,M.VEDADI, JRNL AUTH 3 J.F.COUTURE JRNL TITL MOLECULAR BASIS FOR THE METHYLATION SPECIFICITY OF ATXR5 FOR JRNL TITL 2 HISTONE H3. JRNL REF NUCLEIC ACIDS RES. V. 45 6375 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28383693 JRNL DOI 10.1093/NAR/GKX224 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 29390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4063 - 4.6626 0.99 2605 154 0.1950 0.2175 REMARK 3 2 4.6626 - 3.7041 1.00 2583 127 0.1583 0.1816 REMARK 3 3 3.7041 - 3.2368 0.99 2571 142 0.1899 0.2099 REMARK 3 4 3.2368 - 2.9413 0.99 2579 120 0.2120 0.2568 REMARK 3 5 2.9413 - 2.7307 0.99 2533 142 0.2121 0.2687 REMARK 3 6 2.7307 - 2.5698 0.98 2538 120 0.2221 0.3006 REMARK 3 7 2.5698 - 2.4412 0.98 2538 129 0.2188 0.2412 REMARK 3 8 2.4412 - 2.3350 0.98 2525 139 0.2163 0.3313 REMARK 3 9 2.3350 - 2.2452 0.97 2480 131 0.2195 0.2802 REMARK 3 10 2.2452 - 2.1678 0.97 2488 148 0.2286 0.2825 REMARK 3 11 2.1678 - 2.1000 0.96 2457 141 0.2378 0.3147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3675 REMARK 3 ANGLE : 0.997 4958 REMARK 3 CHIRALITY : 0.056 544 REMARK 3 PLANARITY : 0.005 651 REMARK 3 DIHEDRAL : 15.208 2263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% POLYPROPYLENE GLYCOL 400, 100MM NA REMARK 280 -HEPES PH 6.0 AND 5% DMSO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.58500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 146 REMARK 465 ARG A 147 REMARK 465 ARG A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 LEU A 152 REMARK 465 VAL A 153 REMARK 465 TYR A 154 REMARK 465 GLN A 155 REMARK 465 LYS A 156 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 ARG B 146 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 SER B 149 REMARK 465 GLY B 150 REMARK 465 SER B 151 REMARK 465 LEU B 152 REMARK 465 VAL B 153 REMARK 465 TYR B 154 REMARK 465 GLN B 155 REMARK 465 LYS B 156 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 ARG B 159 REMARK 465 LYS D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 HIS A 281 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 SER B 199 OG REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 281 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LEU B 322 CG CD1 CD2 REMARK 470 ASP B 323 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 223 O HOH A 501 1.84 REMARK 500 NZ LYS B 306 O HOH B 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 259 NZ LYS C 23 2455 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 201 -148.15 -120.41 REMARK 500 PRO A 304 44.17 -89.38 REMARK 500 ASN A 362 58.57 -110.53 REMARK 500 TYR A 364 -61.84 -152.32 REMARK 500 MET B 201 -100.21 -105.78 REMARK 500 SER B 286 36.39 -143.03 REMARK 500 PRO B 304 39.05 -90.78 REMARK 500 ASN B 362 58.11 -112.75 REMARK 500 TYR B 364 -67.36 -143.81 REMARK 500 ALA C 24 99.74 73.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 643 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 644 DISTANCE = 6.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VA6 RELATED DB: PDB REMARK 900 RELATED ID: 5VAB RELATED DB: PDB REMARK 900 RELATED ID: 5VAH RELATED DB: PDB REMARK 900 RELATED ID: 5VAC RELATED DB: PDB DBREF 5VBC A 146 374 UNP B9RU15 ATXR5_RICCO 146 374 DBREF 5VBC B 146 374 UNP B9RU15 ATXR5_RICCO 146 374 DBREF 5VBC C 23 36 UNP P59226 H32_ARATH 24 37 DBREF 5VBC D 23 36 UNP P59226 H32_ARATH 24 37 SEQRES 1 A 229 ARG ARG ARG SER GLY SER LEU VAL TYR GLN LYS ARG ARG SEQRES 2 A 229 ARG ARG LEU LEU PRO PHE VAL SER SER GLU ASP PRO ALA SEQRES 3 A 229 GLN ARG LEU LYS GLN MET GLY THR LEU ALA SER ALA LEU SEQRES 4 A 229 THR GLU LEU GLN MET GLU PHE SER ASP ASP LEU THR TYR SEQRES 5 A 229 SER SER GLY MET ALA PRO ARG SER ALA ASN GLN ALA ARG SEQRES 6 A 229 PHE GLU GLU GLY GLY MET GLN VAL LEU THR LYS GLU ASP SEQRES 7 A 229 ILE GLU THR LEU GLU GLN CYS ARG ALA MET CYS LYS ARG SEQRES 8 A 229 GLY ASP CYS PRO PRO LEU LEU VAL VAL PHE ASP SER ARG SEQRES 9 A 229 GLU GLY PHE THR VAL GLU ALA ASP GLY GLN ILE LYS ASP SEQRES 10 A 229 MET THR PHE ILE ALA GLU TYR THR GLY ASP VAL ASP TYR SEQRES 11 A 229 ILE ARG ASN ARG GLU HIS ASP ASP CYS ASP SER MET MET SEQRES 12 A 229 THR LEU LEU LEU ALA LYS ASP PRO SER LYS SER LEU VAL SEQRES 13 A 229 ILE CYS PRO ASP LYS ARG GLY ASN ILE ALA ARG PHE ILE SEQRES 14 A 229 SER GLY ILE ASN ASN HIS THR LEU ASP GLY LYS LYS LYS SEQRES 15 A 229 GLN ASN CYS LYS CYS VAL ARG TYR SER VAL ASN GLY GLU SEQRES 16 A 229 CYS ARG VAL PHE LEU VAL ALA THR ARG ASP ILE ALA LYS SEQRES 17 A 229 GLY GLU ARG LEU TYR TYR ASP TYR ASN GLY TYR GLU HIS SEQRES 18 A 229 GLU TYR PRO THR GLN HIS PHE VAL SEQRES 1 B 229 ARG ARG ARG SER GLY SER LEU VAL TYR GLN LYS ARG ARG SEQRES 2 B 229 ARG ARG LEU LEU PRO PHE VAL SER SER GLU ASP PRO ALA SEQRES 3 B 229 GLN ARG LEU LYS GLN MET GLY THR LEU ALA SER ALA LEU SEQRES 4 B 229 THR GLU LEU GLN MET GLU PHE SER ASP ASP LEU THR TYR SEQRES 5 B 229 SER SER GLY MET ALA PRO ARG SER ALA ASN GLN ALA ARG SEQRES 6 B 229 PHE GLU GLU GLY GLY MET GLN VAL LEU THR LYS GLU ASP SEQRES 7 B 229 ILE GLU THR LEU GLU GLN CYS ARG ALA MET CYS LYS ARG SEQRES 8 B 229 GLY ASP CYS PRO PRO LEU LEU VAL VAL PHE ASP SER ARG SEQRES 9 B 229 GLU GLY PHE THR VAL GLU ALA ASP GLY GLN ILE LYS ASP SEQRES 10 B 229 MET THR PHE ILE ALA GLU TYR THR GLY ASP VAL ASP TYR SEQRES 11 B 229 ILE ARG ASN ARG GLU HIS ASP ASP CYS ASP SER MET MET SEQRES 12 B 229 THR LEU LEU LEU ALA LYS ASP PRO SER LYS SER LEU VAL SEQRES 13 B 229 ILE CYS PRO ASP LYS ARG GLY ASN ILE ALA ARG PHE ILE SEQRES 14 B 229 SER GLY ILE ASN ASN HIS THR LEU ASP GLY LYS LYS LYS SEQRES 15 B 229 GLN ASN CYS LYS CYS VAL ARG TYR SER VAL ASN GLY GLU SEQRES 16 B 229 CYS ARG VAL PHE LEU VAL ALA THR ARG ASP ILE ALA LYS SEQRES 17 B 229 GLY GLU ARG LEU TYR TYR ASP TYR ASN GLY TYR GLU HIS SEQRES 18 B 229 GLU TYR PRO THR GLN HIS PHE VAL SEQRES 1 C 14 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 2 C 14 LYS SEQRES 1 D 14 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 2 D 14 LYS HET SAH A 401 26 HET DMS A 402 4 HET SAH B 401 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 6 DMS C2 H6 O S FORMUL 8 HOH *287(H2 O) HELIX 1 AA1 ASP A 169 LEU A 187 1 19 HELIX 2 AA2 PRO A 203 ASN A 207 5 5 HELIX 3 AA3 GLN A 208 GLU A 212 5 5 HELIX 4 AA4 THR A 220 GLY A 237 1 18 HELIX 5 AA5 ARG A 277 GLU A 280 5 4 HELIX 6 AA6 ASP A 295 LYS A 298 5 4 HELIX 7 AA7 ASN A 309 ILE A 314 5 6 HELIX 8 AA8 ASP A 323 GLN A 328 5 6 HELIX 9 AA9 ASP B 169 LEU B 187 1 19 HELIX 10 AB1 PRO B 203 ASN B 207 5 5 HELIX 11 AB2 GLN B 208 GLU B 212 5 5 HELIX 12 AB3 THR B 220 GLY B 237 1 18 HELIX 13 AB4 ARG B 277 GLU B 280 5 4 HELIX 14 AB5 ASP B 295 LYS B 298 5 4 HELIX 15 AB6 ASN B 309 ILE B 314 5 6 HELIX 16 AB7 ASP B 323 GLN B 328 5 6 SHEET 1 AA1 2 GLU A 190 PHE A 191 0 SHEET 2 AA1 2 ARG A 307 GLY A 308 1 O GLY A 308 N GLU A 190 SHEET 1 AA2 5 LEU A 195 THR A 196 0 SHEET 2 AA2 5 GLY A 271 TYR A 275 1 O VAL A 273 N THR A 196 SHEET 3 AA2 5 LEU A 300 CYS A 303 -1 O CYS A 303 N ASP A 272 SHEET 4 AA2 5 MET A 287 LEU A 291 -1 N MET A 288 O ILE A 302 SHEET 5 AA2 5 ARG C 26 LYS C 27 1 O LYS C 27 N MET A 287 SHEET 1 AA3 2 LEU A 242 ASP A 247 0 SHEET 2 AA3 2 GLY A 251 ALA A 256 -1 O GLY A 251 N ASP A 247 SHEET 1 AA4 3 PHE A 265 GLU A 268 0 SHEET 2 AA4 3 GLU A 340 ALA A 347 -1 O LEU A 345 N ALA A 267 SHEET 3 AA4 3 CYS A 330 VAL A 337 -1 N VAL A 333 O PHE A 344 SHEET 1 AA5 2 SER A 315 GLY A 316 0 SHEET 2 AA5 2 TYR A 358 TYR A 359 1 O TYR A 359 N SER A 315 SHEET 1 AA6 2 GLU B 190 PHE B 191 0 SHEET 2 AA6 2 ARG B 307 GLY B 308 1 O GLY B 308 N GLU B 190 SHEET 1 AA7 2 LEU B 242 ASP B 247 0 SHEET 2 AA7 2 GLY B 251 ALA B 256 -1 O THR B 253 N VAL B 245 SHEET 1 AA8 3 PHE B 265 GLU B 268 0 SHEET 2 AA8 3 GLU B 340 ALA B 347 -1 O LEU B 345 N ILE B 266 SHEET 3 AA8 3 CYS B 330 VAL B 337 -1 N VAL B 337 O GLU B 340 SHEET 1 AA9 4 ASP B 272 TYR B 275 0 SHEET 2 AA9 4 LEU B 300 CYS B 303 -1 O CYS B 303 N ASP B 272 SHEET 3 AA9 4 MET B 287 LEU B 291 -1 N MET B 288 O ILE B 302 SHEET 4 AA9 4 ARG D 26 LYS D 27 1 O LYS D 27 N MET B 287 SHEET 1 AB1 2 SER B 315 GLY B 316 0 SHEET 2 AB1 2 TYR B 358 TYR B 359 1 O TYR B 359 N SER B 315 SITE 1 AC1 18 ARG A 249 GLU A 250 PHE A 252 ASP A 285 SITE 2 AC1 18 SER A 286 ARG A 312 SER A 315 GLY A 316 SITE 3 AC1 18 TYR A 361 TYR A 368 PHE A 373 VAL A 374 SITE 4 AC1 18 HOH A 513 HOH A 539 HOH A 552 HOH A 559 SITE 5 AC1 18 HOH A 565 LYS C 27 SITE 1 AC2 1 MET A 177 SITE 1 AC3 11 GLU B 250 PHE B 252 ARG B 312 SER B 315 SITE 2 AC3 11 GLY B 316 TYR B 361 TYR B 368 PHE B 373 SITE 3 AC3 11 VAL B 374 HOH B 569 LYS D 27 CRYST1 101.170 87.310 74.510 90.00 127.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009884 0.000000 0.007662 0.00000 SCALE2 0.000000 0.011453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016981 0.00000