HEADER HYDROLASE/HYDROLASE INHIBITOR 29-MAR-17 5VBE TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE DISULFIDE 2C07 BOUND TO H-RAS M72C TITLE 2 GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS GTPASE, INHIBITOR, GDP, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.GENTILE,M.L.JENKINS,S.M.MOSS,J.E.BURKE,K.M.SHOKAT REVDAT 5 04-OCT-23 5VBE 1 LINK REVDAT 4 04-DEC-19 5VBE 1 REMARK REVDAT 3 03-JAN-18 5VBE 1 JRNL REVDAT 2 01-NOV-17 5VBE 1 JRNL REVDAT 1 25-OCT-17 5VBE 0 JRNL AUTH D.R.GENTILE,M.K.RATHINASWAMY,M.L.JENKINS,S.M.MOSS, JRNL AUTH 2 B.D.SIEMPELKAMP,A.R.RENSLO,J.E.BURKE,K.M.SHOKAT JRNL TITL RAS BINDER INDUCES A MODIFIED SWITCH-II POCKET IN GTP AND JRNL TITL 2 GDP STATES. JRNL REF CELL CHEM BIOL V. 24 1455 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 29033317 JRNL DOI 10.1016/J.CHEMBIOL.2017.08.025 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3442 - 3.4902 1.00 2521 144 0.1533 0.1614 REMARK 3 2 3.4902 - 2.7703 1.00 2406 165 0.1708 0.1905 REMARK 3 3 2.7703 - 2.4202 1.00 2432 124 0.1757 0.2204 REMARK 3 4 2.4202 - 2.1989 1.00 2386 153 0.1743 0.1991 REMARK 3 5 2.1989 - 2.0413 1.00 2418 120 0.1815 0.2370 REMARK 3 6 2.0413 - 1.9209 1.00 2388 152 0.1868 0.2310 REMARK 3 7 1.9209 - 1.8247 1.00 2377 155 0.2085 0.2564 REMARK 3 8 1.8247 - 1.7453 1.00 2370 150 0.2024 0.2316 REMARK 3 9 1.7453 - 1.6781 1.00 2376 134 0.2080 0.2172 REMARK 3 10 1.6781 - 1.6202 1.00 2434 99 0.2222 0.2283 REMARK 3 11 1.6202 - 1.5695 0.97 2323 103 0.2423 0.2536 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1406 REMARK 3 ANGLE : 1.097 1899 REMARK 3 CHIRALITY : 0.058 210 REMARK 3 PLANARITY : 0.006 245 REMARK 3 DIHEDRAL : 15.697 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5868 15.7754 -24.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1389 REMARK 3 T33: 0.2260 T12: -0.0088 REMARK 3 T13: 0.0529 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 7.2230 L22: 5.2323 REMARK 3 L33: 4.7582 L12: -4.1812 REMARK 3 L13: 3.8570 L23: -2.5804 REMARK 3 S TENSOR REMARK 3 S11: -0.1578 S12: -0.4579 S13: -0.0697 REMARK 3 S21: 0.2985 S22: 0.2028 S23: 0.7041 REMARK 3 S31: -0.1282 S32: -0.4760 S33: 0.0342 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:28) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6519 21.8727 -25.2125 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.1279 REMARK 3 T33: 0.1662 T12: 0.0216 REMARK 3 T13: 0.0064 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 6.7174 L22: 5.2426 REMARK 3 L33: 3.8571 L12: 0.0983 REMARK 3 L13: 1.6555 L23: -2.4960 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: -0.1854 S13: 0.7335 REMARK 3 S21: 0.1127 S22: 0.0463 S23: 0.0558 REMARK 3 S31: -0.4025 S32: -0.1795 S33: 0.1018 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 29:35) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1613 19.2589 -17.0297 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.2402 REMARK 3 T33: 0.2752 T12: 0.0291 REMARK 3 T13: -0.0545 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 8.3340 L22: 8.2769 REMARK 3 L33: 3.2012 L12: 0.2902 REMARK 3 L13: -2.9087 L23: -4.3295 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: -0.6085 S13: -0.1036 REMARK 3 S21: 0.5927 S22: 0.0241 S23: -0.5413 REMARK 3 S31: -0.1393 S32: 0.7739 S33: -0.3182 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 36:49) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1175 23.0238 -25.0435 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1978 REMARK 3 T33: 0.1497 T12: -0.0402 REMARK 3 T13: 0.0254 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.9016 L22: 7.3294 REMARK 3 L33: 5.3468 L12: -6.1956 REMARK 3 L13: 5.4772 L23: -6.2889 REMARK 3 S TENSOR REMARK 3 S11: -0.3954 S12: -0.5821 S13: 0.0926 REMARK 3 S21: 0.3425 S22: 0.3449 S23: 0.0013 REMARK 3 S31: -0.2885 S32: -0.6094 S33: 0.0649 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 50:59) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2919 18.9393 -22.8377 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.1451 REMARK 3 T33: 0.2200 T12: -0.0012 REMARK 3 T13: 0.0379 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 6.1951 L22: 4.8385 REMARK 3 L33: 7.0001 L12: -3.6034 REMARK 3 L13: 4.0283 L23: -3.7031 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.5294 S13: -0.1143 REMARK 3 S21: 0.3546 S22: 0.3085 S23: 0.4323 REMARK 3 S31: -0.1692 S32: -0.2127 S33: -0.0598 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 60:72) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6993 8.8711 -14.5902 REMARK 3 T TENSOR REMARK 3 T11: 0.8824 T22: 0.6155 REMARK 3 T33: 0.7754 T12: -0.1924 REMARK 3 T13: 0.2132 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 8.9611 L22: 3.4295 REMARK 3 L33: 9.0254 L12: 1.5354 REMARK 3 L13: 5.6851 L23: -3.1424 REMARK 3 S TENSOR REMARK 3 S11: 1.1094 S12: -1.0694 S13: 0.6263 REMARK 3 S21: 2.0888 S22: -0.2722 S23: 0.0498 REMARK 3 S31: -1.1538 S32: 0.3522 S33: -0.8338 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 73:94) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1091 6.1646 -27.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1370 REMARK 3 T33: 0.0878 T12: -0.0119 REMARK 3 T13: 0.0252 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 7.3920 L22: 3.6605 REMARK 3 L33: 1.0973 L12: -1.1011 REMARK 3 L13: -1.2873 L23: 0.2911 REMARK 3 S TENSOR REMARK 3 S11: -0.0893 S12: -0.3124 S13: -0.1614 REMARK 3 S21: 0.3015 S22: 0.0616 S23: 0.2688 REMARK 3 S31: 0.0673 S32: -0.0543 S33: 0.0285 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 95:99) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4106 -0.1877 -24.7251 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.2171 REMARK 3 T33: 0.2992 T12: -0.0077 REMARK 3 T13: 0.0367 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 4.6507 L22: 9.3676 REMARK 3 L33: 3.8662 L12: 5.4704 REMARK 3 L13: 4.1932 L23: 5.4375 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: 0.0318 S13: -0.5728 REMARK 3 S21: 0.6156 S22: 0.0051 S23: 0.2155 REMARK 3 S31: 0.2456 S32: -0.1975 S33: -0.1121 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 100:107) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9731 -0.3601 -24.5217 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2060 REMARK 3 T33: 0.3268 T12: -0.0721 REMARK 3 T13: 0.0905 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 8.1373 L22: 6.6860 REMARK 3 L33: 7.5571 L12: 1.6540 REMARK 3 L13: -1.2989 L23: -0.8381 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: -0.5785 S13: -0.3833 REMARK 3 S21: 0.2680 S22: -0.4992 S23: 0.3903 REMARK 3 S31: 0.6643 S32: -0.6806 S33: 0.2047 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 108:123) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6296 10.7339 -33.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1025 REMARK 3 T33: 0.1150 T12: 0.0126 REMARK 3 T13: -0.0198 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 7.3088 L22: 2.8129 REMARK 3 L33: 2.7111 L12: 0.9559 REMARK 3 L13: -3.2096 L23: -0.6072 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.3752 S13: -0.0142 REMARK 3 S21: -0.0649 S22: 0.0637 S23: -0.0026 REMARK 3 S31: 0.0250 S32: 0.0371 S33: -0.0461 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 124:143) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5536 4.5622 -38.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1819 REMARK 3 T33: 0.1184 T12: -0.0070 REMARK 3 T13: -0.0075 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.9572 L22: 4.1293 REMARK 3 L33: 0.9537 L12: 2.4427 REMARK 3 L13: 0.3507 L23: -0.5278 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.5250 S13: -0.1253 REMARK 3 S21: -0.1960 S22: 0.1110 S23: 0.1645 REMARK 3 S31: 0.1085 S32: 0.0360 S33: -0.0413 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 144:166) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9183 17.6664 -34.2502 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1230 REMARK 3 T33: 0.2017 T12: 0.0019 REMARK 3 T13: 0.0014 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 4.9841 L22: 4.4434 REMARK 3 L33: 1.8597 L12: 1.6785 REMARK 3 L13: 0.9101 L23: -0.3036 REMARK 3 S TENSOR REMARK 3 S11: -0.1814 S12: 0.2622 S13: 0.2633 REMARK 3 S21: -0.1419 S22: 0.2571 S23: 0.4911 REMARK 3 S31: -0.0550 S32: -0.1651 S33: -0.0589 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4LYJ REMARK 200 REMARK 200 REMARK: HEXAGONAL GEMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG8000 .1M TRIS HCL (PH 7.7) .1 M REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.32400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.74517 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.17733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.32400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.74517 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.17733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.32400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.74517 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.17733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.32400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.74517 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.17733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.32400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.74517 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.17733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.32400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.74517 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.17733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.49035 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.35467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.49035 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.35467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.49035 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.35467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.49035 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.35467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.49035 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.35467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.49035 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.35467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H201 92V A 202 O HOH A 306 1.55 REMARK 500 O TYR A 71 H GLY A 75 1.57 REMARK 500 SG CYS A 72 S24 92V A 202 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 51 CB CYS A 51 SG -0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 32.99 70.65 REMARK 500 ARG A 149 -2.85 80.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 90.1 REMARK 620 3 HOH A 312 O 80.9 90.6 REMARK 620 4 HOH A 315 O 94.3 85.1 173.6 REMARK 620 5 HOH A 322 O 88.0 167.1 101.7 82.2 REMARK 620 6 HOH A 368 O 173.4 90.1 92.6 92.2 93.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 92V A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VBM RELATED DB: PDB DBREF 5VBE A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 5VBE GLY A -4 UNP P01112 EXPRESSION TAG SEQADV 5VBE ALA A -3 UNP P01112 EXPRESSION TAG SEQADV 5VBE MET A -2 UNP P01112 EXPRESSION TAG SEQADV 5VBE GLY A -1 UNP P01112 EXPRESSION TAG SEQADV 5VBE SER A 0 UNP P01112 EXPRESSION TAG SEQADV 5VBE CYS A 72 UNP P01112 MET 72 ENGINEERED MUTATION SEQRES 1 A 171 GLY ALA MET GLY SER MET THR GLU TYR LYS LEU VAL VAL SEQRES 2 A 171 VAL GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE SEQRES 3 A 171 GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO SEQRES 4 A 171 THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP SEQRES 5 A 171 GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY SEQRES 6 A 171 GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR CYS ARG SEQRES 7 A 171 THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN SEQRES 8 A 171 THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN SEQRES 9 A 171 ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL SEQRES 10 A 171 LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR VAL SEQRES 11 A 171 GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY SEQRES 12 A 171 ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY SEQRES 13 A 171 VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG SEQRES 14 A 171 GLN HIS HET GDP A 201 40 HET 92V A 202 39 HET MG A 203 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 92V 1-(4-METHOXYPHENYL)-N-(3-SULFANYLPROPYL)-5- HETNAM 2 92V (TRIFLUOROMETHYL)-1H-PYRAZOLE-4-CARBOXAMIDE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 92V C15 H16 F3 N3 O2 S FORMUL 4 MG MG 2+ FORMUL 5 HOH *97(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ALA A 66 GLY A 75 1 10 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 GLU A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 HIS A 166 1 16 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 203 1555 1555 2.30 LINK O2B GDP A 201 MG MG A 203 1555 1555 2.26 LINK MG MG A 203 O HOH A 312 1555 1555 2.33 LINK MG MG A 203 O HOH A 315 1555 1555 2.36 LINK MG MG A 203 O HOH A 322 1555 1555 2.40 LINK MG MG A 203 O HOH A 368 1555 1555 2.33 SITE 1 AC1 25 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 25 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 25 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 25 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 25 MG A 203 HOH A 315 HOH A 348 HOH A 355 SITE 6 AC1 25 HOH A 356 HOH A 368 HOH A 383 HOH A 384 SITE 7 AC1 25 HOH A 385 SITE 1 AC2 10 GLN A 61 ARG A 68 CYS A 72 PHE A 78 SITE 2 AC2 10 ASP A 92 GLN A 95 TYR A 96 GLN A 99 SITE 3 AC2 10 HOH A 306 HOH A 352 SITE 1 AC3 6 SER A 17 GDP A 201 HOH A 312 HOH A 315 SITE 2 AC3 6 HOH A 322 HOH A 368 CRYST1 92.648 92.648 120.532 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010794 0.006232 0.000000 0.00000 SCALE2 0.000000 0.012463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008297 0.00000