HEADER TRANSCRIPTION/INHIBITOR 30-MAR-17 5VBO TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH LRRK2-IN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, CAP, HUNK1, MCAP, PROTEIN BINDING-INHIBITOR COMPLEX, KEYWDS 2 MITOTIC CHROMOSOME ASSOCIATED PROTEIN, INHIBITOR, TRANSCRIPTION- KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.-Y.ZHU,E.SCHONBRUNN REVDAT 4 04-OCT-23 5VBO 1 REMARK REVDAT 3 17-NOV-21 5VBO 1 JRNL REVDAT 2 11-DEC-19 5VBO 1 REMARK REVDAT 1 04-APR-18 5VBO 0 JRNL AUTH R.M.KARIM,M.J.BIKOWITZ,A.CHAN,J.Y.ZHU,D.GRASSIE,A.BECKER, JRNL AUTH 2 N.BERNDT,S.GUNAWAN,N.J.LAWRENCE,E.SCHONBRUNN JRNL TITL DIFFERENTIAL BET BROMODOMAIN INHIBITION BY JRNL TITL 2 DIHYDROPTERIDINONE AND PYRIMIDODIAZEPINONE KINASE JRNL TITL 3 INHIBITORS. JRNL REF J.MED.CHEM. 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34710325 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01096 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8709 - 2.7037 1.00 3239 146 0.1481 0.1523 REMARK 3 2 2.7037 - 2.1462 1.00 3087 139 0.1394 0.1547 REMARK 3 3 2.1462 - 1.8749 1.00 3064 137 0.1401 0.1506 REMARK 3 4 1.8749 - 1.7035 0.99 3031 137 0.1509 0.1829 REMARK 3 5 1.7035 - 1.5814 0.99 3017 135 0.1478 0.1955 REMARK 3 6 1.5814 - 1.4882 0.99 2981 134 0.1560 0.1845 REMARK 3 7 1.4882 - 1.4137 0.98 2978 134 0.1629 0.1735 REMARK 3 8 1.4137 - 1.3521 0.98 2966 133 0.1686 0.1816 REMARK 3 9 1.3521 - 1.3001 0.92 2769 125 0.1822 0.1982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1168 REMARK 3 ANGLE : 1.349 1584 REMARK 3 CHIRALITY : 0.069 160 REMARK 3 PLANARITY : 0.008 201 REMARK 3 DIHEDRAL : 19.557 457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0573 -11.5978 7.0028 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.1192 REMARK 3 T33: 0.1462 T12: 0.0084 REMARK 3 T13: 0.0060 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.5841 L22: 3.1366 REMARK 3 L33: 4.3616 L12: -3.6573 REMARK 3 L13: 4.4610 L23: -3.5113 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: 0.1809 S13: -0.1818 REMARK 3 S21: 0.0027 S22: -0.0621 S23: -0.0357 REMARK 3 S31: 0.1534 S32: 0.3051 S33: -0.1474 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9107 -4.7432 -5.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0939 REMARK 3 T33: 0.0803 T12: -0.0040 REMARK 3 T13: -0.0295 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 8.4677 L22: 6.4071 REMARK 3 L33: 8.3517 L12: 1.8478 REMARK 3 L13: -1.4163 L23: -1.4247 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0549 S13: -0.1119 REMARK 3 S21: -0.1405 S22: -0.0297 S23: -0.4815 REMARK 3 S31: 0.0509 S32: 0.4620 S33: 0.0420 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2461 -2.0564 14.4719 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0992 REMARK 3 T33: 0.1244 T12: -0.0122 REMARK 3 T13: 0.0065 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 4.2331 L22: 0.5300 REMARK 3 L33: 5.9036 L12: -0.4302 REMARK 3 L13: 4.4123 L23: 0.3007 REMARK 3 S TENSOR REMARK 3 S11: -0.1400 S12: -0.1969 S13: 0.2205 REMARK 3 S21: 0.0490 S22: -0.0778 S23: 0.0264 REMARK 3 S31: -0.1644 S32: -0.2432 S33: 0.2425 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1344 -15.2780 15.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.1060 REMARK 3 T33: 0.0632 T12: -0.0033 REMARK 3 T13: -0.0025 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.6876 L22: 4.5769 REMARK 3 L33: 1.5133 L12: -0.0606 REMARK 3 L13: -0.1888 L23: 1.3556 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.1952 S13: -0.0572 REMARK 3 S21: 0.2076 S22: 0.0809 S23: -0.2637 REMARK 3 S31: 0.1121 S32: 0.1815 S33: -0.0316 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7359 -10.3203 8.3812 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0536 REMARK 3 T33: 0.0666 T12: 0.0019 REMARK 3 T13: 0.0144 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.6313 L22: 2.0368 REMARK 3 L33: 4.3810 L12: -1.2637 REMARK 3 L13: 1.8040 L23: -2.5529 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0488 S13: 0.0162 REMARK 3 S21: -0.0010 S22: -0.0160 S23: 0.0033 REMARK 3 S31: 0.0487 S32: -0.1136 S33: -0.0400 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3380 -19.9194 27.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.1828 REMARK 3 T33: 0.1106 T12: 0.0019 REMARK 3 T13: 0.0334 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 7.8856 L22: 6.2859 REMARK 3 L33: 7.6208 L12: 6.1128 REMARK 3 L13: -2.3175 L23: -3.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.9515 S13: -0.2493 REMARK 3 S21: 0.9088 S22: -0.2569 S23: 0.0896 REMARK 3 S31: 0.4833 S32: 0.3415 S33: 0.2173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5339 -9.8726 19.0484 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.1129 REMARK 3 T33: 0.1152 T12: -0.0354 REMARK 3 T13: 0.0482 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 7.4100 L22: 4.6708 REMARK 3 L33: 4.2227 L12: -2.8877 REMARK 3 L13: 2.7496 L23: -2.8450 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.2206 S13: -0.0602 REMARK 3 S21: 0.1564 S22: 0.1799 S23: 0.3095 REMARK 3 S31: 0.0168 S32: -0.3431 S33: -0.1199 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.862 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.913 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.12 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 MG/ML BRD4, 55MM HEPES PH 7.5, REMARK 280 15% JEFFAMINE ED-2001 PH 7.0, 10% DMSO, 1 MM LRRK2-IN-1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.40500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 303 O HOH A 368 2.08 REMARK 500 OE1 GLU A 115 O HOH A 301 2.17 REMARK 500 O ASN A 140 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 43 -169.37 -79.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4K4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VBP RELATED DB: PDB REMARK 900 RELATED ID: 5VBQ RELATED DB: PDB REMARK 900 RELATED ID: 5VBR RELATED DB: PDB DBREF 5VBO A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 5VBO SER A 42 UNP O60885 EXPRESSION TAG SEQADV 5VBO MET A 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET 4K4 A 201 80 HET CL A 202 1 HET CL A 203 1 HET EDO A 204 10 HET EDO A 205 10 HET EDO A 206 10 HET EDO A 207 10 HET EDO A 208 10 HETNAM 4K4 2-[(2-METHOXY-4-{[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN- HETNAM 2 4K4 1-YL]CARBONYL}PHENYL)AMINO]-5,11-DIMETHYL-5,11- HETNAM 3 4K4 DIHYDRO-6H-PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6-ONE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 4K4 C31 H38 N8 O3 FORMUL 3 CL 2(CL 1-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 HOH *128(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 HIS A 77 GLN A 84 5 8 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 ASN A 162 1 19 SITE 1 AC1 14 TRP A 81 PRO A 82 PHE A 83 GLN A 85 SITE 2 AC1 14 VAL A 87 LEU A 94 GLU A 115 ASN A 117 SITE 3 AC1 14 ASN A 140 ILE A 146 EDO A 207 EDO A 208 SITE 4 AC1 14 HOH A 323 HOH A 361 SITE 1 AC2 3 LYS A 57 LYS A 99 LYS A 102 SITE 1 AC3 6 PRO A 45 PRO A 47 PRO A 86 HOH A 354 SITE 2 AC3 6 HOH A 421 HOH A 424 SITE 1 AC4 7 ARG A 58 THR A 60 GLN A 62 TRP A 120 SITE 2 AC4 7 ALA A 122 HOH A 307 HOH A 308 SITE 1 AC5 7 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC5 7 ASN A 135 HOH A 318 HOH A 347 SITE 1 AC6 6 GLN A 78 PHE A 79 PRO A 82 MET A 149 SITE 2 AC6 6 HOH A 324 HOH A 325 SITE 1 AC7 6 GLN A 59 GLN A 64 ARG A 68 GLU A 151 SITE 2 AC7 6 4K4 A 201 HOH A 358 SITE 1 AC8 6 ASN A 140 ASP A 144 ASP A 145 ILE A 146 SITE 2 AC8 6 LYS A 155 4K4 A 201 CRYST1 38.810 50.900 57.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017292 0.00000