HEADER TRANSCRIPTION/INHIBITOR 30-MAR-17 5VBQ TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRDT IN COMPLEX TITLE 2 WITH BI2536 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-137; COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 9,CT9,RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BROMODOMAIN, CAP, HUNK1, MCAP, PROTEIN BINDING-INHIBITOR COMPLEX, KEYWDS 2 MITOTIC CHROMOSOME ASSOCIATED PROTEIN, INHIBITOR, TRANSCRIPTION- KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.W.EMBER,J.-Y.ZHU,E.SCHONBRUNN REVDAT 4 04-OCT-23 5VBQ 1 REMARK REVDAT 3 17-NOV-21 5VBQ 1 JRNL REVDAT 2 11-DEC-19 5VBQ 1 REMARK REVDAT 1 04-APR-18 5VBQ 0 JRNL AUTH R.M.KARIM,M.J.BIKOWITZ,A.CHAN,J.Y.ZHU,D.GRASSIE,A.BECKER, JRNL AUTH 2 N.BERNDT,S.GUNAWAN,N.J.LAWRENCE,E.SCHONBRUNN JRNL TITL DIFFERENTIAL BET BROMODOMAIN INHIBITION BY JRNL TITL 2 DIHYDROPTERIDINONE AND PYRIMIDODIAZEPINONE KINASE JRNL TITL 3 INHIBITORS. JRNL REF J.MED.CHEM. 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34710325 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01096 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4912 - 3.5536 0.97 3329 138 0.1385 0.1398 REMARK 3 2 3.5536 - 2.8210 0.99 3227 135 0.1471 0.1882 REMARK 3 3 2.8210 - 2.4646 0.99 3267 136 0.1433 0.1865 REMARK 3 4 2.4646 - 2.2393 0.99 3207 134 0.1428 0.1770 REMARK 3 5 2.2393 - 2.0788 0.99 3232 134 0.1325 0.1806 REMARK 3 6 2.0788 - 1.9562 1.00 3224 134 0.1385 0.1695 REMARK 3 7 1.9562 - 1.8583 1.00 3240 135 0.1426 0.1683 REMARK 3 8 1.8583 - 1.7774 1.00 3212 134 0.1590 0.1966 REMARK 3 9 1.7774 - 1.7090 1.00 3226 135 0.1597 0.2027 REMARK 3 10 1.7090 - 1.6500 0.99 3184 132 0.1701 0.2037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2033 REMARK 3 ANGLE : 1.397 2721 REMARK 3 CHIRALITY : 0.053 281 REMARK 3 PLANARITY : 0.007 334 REMARK 3 DIHEDRAL : 19.010 825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4659 -6.3107 -2.2938 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.2076 REMARK 3 T33: 0.3632 T12: 0.0120 REMARK 3 T13: -0.0132 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 7.7278 L22: 4.9722 REMARK 3 L33: 2.1979 L12: 0.3421 REMARK 3 L13: 0.4562 L23: -0.2409 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.1540 S13: -0.1663 REMARK 3 S21: -0.1404 S22: -0.0254 S23: -0.8072 REMARK 3 S31: 0.1555 S32: 0.5284 S33: 0.0220 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0733 -1.0795 0.4877 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1056 REMARK 3 T33: 0.1634 T12: 0.0056 REMARK 3 T13: -0.0218 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.5657 L22: 3.1413 REMARK 3 L33: 1.4310 L12: 1.4927 REMARK 3 L13: -0.7998 L23: -0.0721 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.1758 S13: 0.1064 REMARK 3 S21: 0.1200 S22: 0.0056 S23: -0.1807 REMARK 3 S31: -0.1568 S32: 0.0702 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7946 -13.3959 -4.6849 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.0690 REMARK 3 T33: 0.1457 T12: -0.0165 REMARK 3 T13: 0.0090 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.4924 L22: 1.0690 REMARK 3 L33: 3.1171 L12: 0.3115 REMARK 3 L13: -1.7245 L23: -0.4243 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.2156 S13: -0.0494 REMARK 3 S21: 0.0169 S22: 0.0560 S23: -0.0695 REMARK 3 S31: 0.2527 S32: -0.1562 S33: -0.0033 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1034 -10.7928 -5.0283 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0688 REMARK 3 T33: 0.1602 T12: -0.0029 REMARK 3 T13: -0.0050 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.0929 L22: 1.3319 REMARK 3 L33: 3.2566 L12: -1.9340 REMARK 3 L13: 3.5555 L23: -0.8894 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.0629 S13: -0.1260 REMARK 3 S21: 0.0031 S22: 0.0130 S23: -0.2243 REMARK 3 S31: 0.1546 S32: 0.1570 S33: -0.0810 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6801 -1.5008 -13.8396 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.1641 REMARK 3 T33: 0.1251 T12: 0.0421 REMARK 3 T13: -0.0338 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.1429 L22: 3.3679 REMARK 3 L33: 4.5105 L12: -3.8996 REMARK 3 L13: -0.2956 L23: -1.8135 REMARK 3 S TENSOR REMARK 3 S11: 0.2567 S12: 0.0614 S13: 0.1028 REMARK 3 S21: -0.6288 S22: -0.0052 S23: 0.6233 REMARK 3 S31: -0.4523 S32: -0.8555 S33: -0.2093 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9254 1.1977 -9.7076 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1352 REMARK 3 T33: 0.1832 T12: -0.0398 REMARK 3 T13: 0.0145 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.2696 L22: 2.1450 REMARK 3 L33: 2.9343 L12: -0.9049 REMARK 3 L13: -0.1717 L23: 0.0189 REMARK 3 S TENSOR REMARK 3 S11: 0.1344 S12: 0.2222 S13: 0.4763 REMARK 3 S21: -0.0515 S22: -0.0698 S23: -0.2973 REMARK 3 S31: -0.1312 S32: 0.3631 S33: -0.0437 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0691 -5.8281 -23.9571 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.5638 REMARK 3 T33: 0.6223 T12: -0.0098 REMARK 3 T13: 0.0513 T23: -0.1572 REMARK 3 L TENSOR REMARK 3 L11: 5.6961 L22: 3.8298 REMARK 3 L33: 4.2735 L12: 2.2133 REMARK 3 L13: -1.0971 L23: -3.8967 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: 0.1184 S13: 0.2913 REMARK 3 S21: 0.0025 S22: -0.0515 S23: -1.0820 REMARK 3 S31: -0.0683 S32: 1.1357 S33: 0.0206 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9224 -13.2715 -29.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.3389 REMARK 3 T33: 0.2834 T12: 0.0441 REMARK 3 T13: 0.0508 T23: -0.1327 REMARK 3 L TENSOR REMARK 3 L11: 3.8491 L22: 3.9628 REMARK 3 L33: 6.8288 L12: 2.5741 REMARK 3 L13: 2.9000 L23: 0.3611 REMARK 3 S TENSOR REMARK 3 S11: 0.1634 S12: 0.4131 S13: -0.4612 REMARK 3 S21: -0.2437 S22: 0.3715 S23: -0.9063 REMARK 3 S31: 0.0984 S32: 0.6076 S33: -0.4242 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3454 -10.4821 -32.2991 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.2098 REMARK 3 T33: 0.1497 T12: -0.0240 REMARK 3 T13: 0.0334 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 6.2837 L22: 3.4443 REMARK 3 L33: 3.0507 L12: -4.6274 REMARK 3 L13: 2.6480 L23: -2.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.1731 S12: 0.3544 S13: -0.0765 REMARK 3 S21: -0.5804 S22: -0.1296 S23: -0.1533 REMARK 3 S31: 0.1747 S32: 0.2855 S33: -0.0304 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8117 -1.7665 -33.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.1990 REMARK 3 T33: 0.1378 T12: 0.0243 REMARK 3 T13: -0.0187 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 5.8380 L22: 3.4367 REMARK 3 L33: 4.0566 L12: 1.7102 REMARK 3 L13: 3.5148 L23: 3.4004 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: -0.1236 S13: -0.0081 REMARK 3 S21: -0.0661 S22: 0.2474 S23: 0.0609 REMARK 3 S31: -0.1251 S32: -0.3052 S33: -0.1602 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1848 0.8106 -28.0672 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.1876 REMARK 3 T33: 0.2130 T12: -0.0826 REMARK 3 T13: 0.0468 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 8.8058 L22: 2.2272 REMARK 3 L33: 2.2281 L12: -0.3244 REMARK 3 L13: 0.7508 L23: -0.1929 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.3380 S13: 0.3095 REMARK 3 S21: -0.3058 S22: 0.0483 S23: -0.4892 REMARK 3 S31: -0.4128 S32: 0.3906 S33: 0.0455 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9631 -4.0035 -20.8672 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.1483 REMARK 3 T33: 0.1770 T12: -0.0022 REMARK 3 T13: -0.0035 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 6.5970 L22: 1.9415 REMARK 3 L33: 2.8982 L12: 0.2054 REMARK 3 L13: 0.4358 L23: -0.0371 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.0848 S13: 0.1935 REMARK 3 S21: -0.0461 S22: 0.0796 S23: -0.3350 REMARK 3 S31: -0.0658 S32: 0.3239 S33: -0.1205 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7570 -11.5553 -20.6346 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.1890 REMARK 3 T33: 0.1583 T12: -0.0621 REMARK 3 T13: 0.0501 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 7.6474 L22: 4.1527 REMARK 3 L33: 5.2429 L12: 2.5015 REMARK 3 L13: -2.0817 L23: -4.6266 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: 0.1396 S13: -0.0943 REMARK 3 S21: 0.5646 S22: 0.0407 S23: 0.8227 REMARK 3 S31: 0.6342 S32: -0.7718 S33: -0.1415 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3521 -14.1328 -20.0376 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2347 REMARK 3 T33: 0.2404 T12: 0.0715 REMARK 3 T13: 0.0020 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 2.4782 L22: 2.7476 REMARK 3 L33: 5.0227 L12: 0.9781 REMARK 3 L13: 3.2156 L23: 0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0929 S12: 0.0160 S13: -0.1574 REMARK 3 S21: -0.0476 S22: 0.0006 S23: -0.5168 REMARK 3 S31: 0.2059 S32: 0.5426 S33: -0.0955 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 34.484 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.662 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.66 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML BRDT, 25MM HEPES PH 7.5, 75MM REMARK 280 SODIUM CHLORIDE, 0.5MM DTT, 50MM MES PH 6.5, 0.1M AMMONIUM, REMARK 280 SULFATE, 15% PEG MME 5,000, 10% DMSO, 1 MM BI2536, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 137 REMARK 465 GLU B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 304 O HOH B 326 2.07 REMARK 500 O HOH A 402 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 324 O HOH A 391 2455 2.11 REMARK 500 O HOH A 375 O HOH A 394 2555 2.16 REMARK 500 O HOH B 368 O HOH B 369 1565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 26 30.43 -165.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R78 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R78 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VBO RELATED DB: PDB REMARK 900 RELATED ID: 5VBP RELATED DB: PDB REMARK 900 RELATED ID: 5VBR RELATED DB: PDB DBREF 5VBQ A 29 137 UNP Q58F21 BRDT_HUMAN 42 150 DBREF 5VBQ B 29 137 UNP Q58F21 BRDT_HUMAN 42 150 SEQADV 5VBQ GLY A 25 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ ALA A 26 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ ALA A 27 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ SER A 28 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ GLY B 25 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ ALA B 26 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ ALA B 27 UNP Q58F21 EXPRESSION TAG SEQADV 5VBQ SER B 28 UNP Q58F21 EXPRESSION TAG SEQRES 1 A 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 A 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 A 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 A 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 A 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 A 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 A 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 A 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 A 113 LYS LEU SER GLN MET PRO GLN GLU GLU SEQRES 1 B 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 B 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 B 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 B 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 B 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 B 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 B 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 B 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 B 113 LYS LEU SER GLN MET PRO GLN GLU GLU HET R78 A 201 77 HET CL A 202 1 HET EDO A 203 10 HET EDO A 204 10 HET EDO A 205 10 HET EDO A 206 10 HET EDO A 207 10 HET EDO A 208 10 HET EDO A 209 10 HET EDO A 210 10 HET EDO A 211 10 HET EDO A 212 10 HET R78 B 201 77 HET EDO B 202 10 HET EDO B 203 10 HET EDO B 204 10 HET EDO B 205 10 HET EDO B 206 10 HET EDO B 207 10 HETNAM R78 4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8- HETNAM 2 R78 TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1- HETNAM 3 R78 METHYLPIPERIDIN-4-YL)BENZAMIDE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 R78 2(C28 H39 N7 O3) FORMUL 4 CL CL 1- FORMUL 5 EDO 16(C2 H6 O2) FORMUL 22 HOH *190(H2 O) HELIX 1 AA1 ALA A 26 VAL A 38 1 13 HELIX 2 AA2 VAL A 38 HIS A 46 1 9 HELIX 3 AA3 SER A 49 GLN A 53 5 5 HELIX 4 AA4 ASP A 57 GLN A 62 1 6 HELIX 5 AA5 ASP A 65 ILE A 70 1 6 HELIX 6 AA6 ASP A 75 ASN A 85 1 11 HELIX 7 AA7 LYS A 90 ASN A 109 1 20 HELIX 8 AA8 ASP A 113 SER A 131 1 19 HELIX 9 AA9 ALA B 26 VAL B 38 1 13 HELIX 10 AB1 VAL B 38 HIS B 46 1 9 HELIX 11 AB2 SER B 49 GLN B 53 5 5 HELIX 12 AB3 ASP B 57 GLN B 62 1 6 HELIX 13 AB4 ASP B 65 ILE B 70 1 6 HELIX 14 AB5 ASP B 75 ASN B 85 1 11 HELIX 15 AB6 LYS B 90 ASN B 109 1 20 HELIX 16 AB7 ASP B 113 SER B 131 1 19 SITE 1 AC1 10 PRO A 51 LEU A 61 LEU A 63 ASN A 109 SITE 2 AC1 10 EDO A 208 HOH A 304 HOH A 319 HOH A 331 SITE 3 AC1 10 HOH A 343 HOH A 351 SITE 1 AC2 1 ASN A 77 SITE 1 AC3 7 ILE A 69 ILE A 70 LYS A 71 ASN A 72 SITE 2 AC3 7 ASN A 104 EDO A 204 HOH A 313 SITE 1 AC4 7 SER A 103 ASN A 104 EDO A 203 HOH A 329 SITE 2 AC4 7 HOH A 359 TYR B 106 GLN B 120 SITE 1 AC5 6 VAL A 56 ASP A 57 ALA A 58 VAL A 59 SITE 2 AC5 6 TYR A 67 HOH A 347 SITE 1 AC6 3 PRO A 55 ASN A 77 THR A 78 SITE 1 AC7 6 PHE A 48 LYS A 71 ASP A 114 LEU A 117 SITE 2 AC7 6 HOH A 309 HOH A 360 SITE 1 AC8 7 PRO A 51 PRO A 55 ASP A 57 LEU A 61 SITE 2 AC8 7 R78 A 201 HOH A 310 HOH A 321 SITE 1 AC9 1 ARG A 82 SITE 1 AD1 4 ASN A 72 ARG A 82 ASP A 97 HOH A 307 SITE 1 AD2 3 LYS A 41 LYS A 80 HOH A 345 SITE 1 AD3 4 THR A 29 LYS A 86 HOH A 334 HOH A 366 SITE 1 AD4 10 PRO B 51 LEU B 61 LEU B 63 ASN B 109 SITE 2 AD4 10 EDO B 204 HOH B 308 HOH B 311 HOH B 312 SITE 3 AD4 10 HOH B 332 HOH B 336 SITE 1 AD5 7 ILE B 69 ILE B 70 LYS B 71 ASN B 72 SITE 2 AD5 7 ASN B 104 EDO B 205 HOH B 302 SITE 1 AD6 6 VAL B 56 ASP B 57 ALA B 58 VAL B 59 SITE 2 AD6 6 TYR B 67 HOH B 323 SITE 1 AD7 6 PRO B 51 PRO B 55 ASP B 57 R78 B 201 SITE 2 AD7 6 HOH B 306 HOH B 325 SITE 1 AD8 7 TYR A 106 GLN A 120 HOH A 306 SER B 103 SITE 2 AD8 7 ASN B 104 EDO B 202 HOH B 335 SITE 1 AD9 2 GLN B 36 LYS B 80 SITE 1 AE1 4 LYS B 71 PRO B 73 HOH B 333 HOH B 334 CRYST1 65.590 31.000 69.470 90.00 96.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015246 0.000000 0.001844 0.00000 SCALE2 0.000000 0.032258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014500 0.00000