HEADER TRANSCRIPTION/INHIBITOR 30-MAR-17 5VBR TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRDT IN COMPLEX TITLE 2 WITH VOLASERTIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-137; COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 9,CT9,RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS BROMODOMAIN, CAP, HUNK1, MCAP, PROTEIN BINDING-INHIBITOR COMPLEX, KEYWDS 2 MITOTIC CHROMOSOME ASSOCIATED PROTEIN, INHIBITOR, TRANSCRIPTION- KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.W.EMBER,J.-Y.ZHU,E.SCHONBRUNN REVDAT 5 04-OCT-23 5VBR 1 REMARK REVDAT 4 17-NOV-21 5VBR 1 JRNL REVDAT 3 11-DEC-19 5VBR 1 COMPND HETNAM REVDAT 2 11-APR-18 5VBR 1 COMPND HETNAM HETSYN REVDAT 1 04-APR-18 5VBR 0 JRNL AUTH R.M.KARIM,M.J.BIKOWITZ,A.CHAN,J.Y.ZHU,D.GRASSIE,A.BECKER, JRNL AUTH 2 N.BERNDT,S.GUNAWAN,N.J.LAWRENCE,E.SCHONBRUNN JRNL TITL DIFFERENTIAL BET BROMODOMAIN INHIBITION BY JRNL TITL 2 DIHYDROPTERIDINONE AND PYRIMIDODIAZEPINONE KINASE JRNL TITL 3 INHIBITORS. JRNL REF J.MED.CHEM. 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34710325 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01096 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.3128 - 3.8000 0.99 2761 144 0.1357 0.1816 REMARK 3 2 3.8000 - 3.0161 1.00 2690 141 0.1486 0.1858 REMARK 3 3 3.0161 - 2.6349 1.00 2656 140 0.1557 0.2184 REMARK 3 4 2.6349 - 2.3939 1.00 2654 140 0.1608 0.2033 REMARK 3 5 2.3939 - 2.2223 1.00 2637 139 0.1591 0.2164 REMARK 3 6 2.2223 - 2.0913 1.00 2660 140 0.1557 0.1961 REMARK 3 7 2.0913 - 1.9866 1.00 2620 138 0.1718 0.1904 REMARK 3 8 1.9866 - 1.9001 1.00 2621 138 0.1988 0.2636 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2013 REMARK 3 ANGLE : 1.014 2705 REMARK 3 CHIRALITY : 0.036 280 REMARK 3 PLANARITY : 0.005 329 REMARK 3 DIHEDRAL : 21.414 826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2091 -0.5381 1.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1116 REMARK 3 T33: 0.1613 T12: 0.0198 REMARK 3 T13: -0.0500 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.7773 L22: 4.0805 REMARK 3 L33: 4.4242 L12: 1.8551 REMARK 3 L13: -1.7362 L23: -0.0427 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: 0.1458 S13: 0.2390 REMARK 3 S21: -0.0715 S22: 0.0224 S23: 0.3693 REMARK 3 S31: 0.1518 S32: -0.2408 S33: 0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1317 -5.8013 2.5984 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0784 REMARK 3 T33: 0.0811 T12: -0.0141 REMARK 3 T13: 0.0075 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.7098 L22: 2.7873 REMARK 3 L33: 0.5780 L12: -1.9687 REMARK 3 L13: 0.0983 L23: -0.0721 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: 0.0276 S13: 0.0485 REMARK 3 S21: -0.1095 S22: -0.0098 S23: -0.0244 REMARK 3 S31: 0.0476 S32: -0.0731 S33: -0.0270 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0716 -7.7828 5.0689 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.0708 REMARK 3 T33: 0.0992 T12: -0.0038 REMARK 3 T13: 0.0054 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.8399 L22: 1.1751 REMARK 3 L33: 2.6906 L12: 1.2185 REMARK 3 L13: 3.1223 L23: 0.9277 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: -0.0002 S13: -0.1716 REMARK 3 S21: -0.0779 S22: 0.0301 S23: 0.0903 REMARK 3 S31: 0.0604 S32: -0.0576 S33: -0.0582 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7429 1.7154 14.0955 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.1062 REMARK 3 T33: 0.1037 T12: -0.0016 REMARK 3 T13: -0.0191 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.2469 L22: 5.0974 REMARK 3 L33: 5.4826 L12: 1.1511 REMARK 3 L13: -3.9490 L23: 1.8734 REMARK 3 S TENSOR REMARK 3 S11: 0.3910 S12: -0.2356 S13: 0.0164 REMARK 3 S21: 0.5082 S22: 0.0345 S23: -0.6080 REMARK 3 S31: -0.4089 S32: 0.5866 S33: -0.1116 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7815 4.3196 9.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.0949 REMARK 3 T33: 0.1133 T12: 0.0167 REMARK 3 T13: -0.0030 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.6483 L22: 2.5540 REMARK 3 L33: 2.1710 L12: 2.4137 REMARK 3 L13: -0.8746 L23: -0.5032 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.1243 S13: 0.4132 REMARK 3 S21: -0.0594 S22: 0.0449 S23: 0.2876 REMARK 3 S31: -0.0526 S32: -0.2446 S33: 0.0080 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5070 -3.7005 24.5265 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.2934 REMARK 3 T33: 0.3938 T12: -0.0036 REMARK 3 T13: 0.0845 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 7.8182 L22: 3.7037 REMARK 3 L33: 7.2655 L12: -0.6697 REMARK 3 L13: 1.2871 L23: 3.8415 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.1890 S13: 0.3635 REMARK 3 S21: 0.2003 S22: 0.1087 S23: 0.8947 REMARK 3 S31: -0.0058 S32: -0.9493 S33: 0.1264 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8514 -10.4640 29.8598 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.1732 REMARK 3 T33: 0.1515 T12: -0.0100 REMARK 3 T13: 0.0550 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 2.9776 L22: 2.8296 REMARK 3 L33: 5.6213 L12: -1.5316 REMARK 3 L13: 3.2939 L23: -0.3795 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.4291 S13: -0.2472 REMARK 3 S21: 0.3128 S22: 0.2097 S23: 0.3910 REMARK 3 S31: 0.3150 S32: -0.4639 S33: -0.1714 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5319 -1.3011 30.5376 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1013 REMARK 3 T33: 0.0751 T12: 0.0226 REMARK 3 T13: 0.0070 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.3724 L22: 2.4857 REMARK 3 L33: 0.9329 L12: 1.3339 REMARK 3 L13: 1.0174 L23: 1.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0818 S13: 0.0353 REMARK 3 S21: 0.2409 S22: 0.0309 S23: 0.0387 REMARK 3 S31: -0.0782 S32: -0.0514 S33: -0.0197 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6521 0.9538 31.7526 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.1893 REMARK 3 T33: 0.1877 T12: 0.0229 REMARK 3 T13: 0.0911 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 4.4623 L22: 3.7150 REMARK 3 L33: 3.0395 L12: -1.6372 REMARK 3 L13: 0.1267 L23: -2.6159 REMARK 3 S TENSOR REMARK 3 S11: -0.2035 S12: -0.4210 S13: 0.0438 REMARK 3 S21: 0.6590 S22: 0.0952 S23: 0.4048 REMARK 3 S31: -0.1458 S32: -0.4720 S33: 0.0431 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5209 0.8203 22.3271 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.0982 REMARK 3 T33: 0.1114 T12: 0.0122 REMARK 3 T13: -0.0008 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 4.9390 L22: 1.9812 REMARK 3 L33: 1.9531 L12: -0.1471 REMARK 3 L13: -0.3454 L23: -0.2351 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.0496 S13: 0.1498 REMARK 3 S21: 0.1172 S22: 0.0911 S23: 0.3546 REMARK 3 S31: -0.0824 S32: -0.2050 S33: -0.0034 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7895 -8.8714 20.7997 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.1404 REMARK 3 T33: 0.0855 T12: 0.0257 REMARK 3 T13: 0.0108 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.5206 L22: 4.7202 REMARK 3 L33: 4.2630 L12: -3.8808 REMARK 3 L13: -3.6722 L23: 3.6111 REMARK 3 S TENSOR REMARK 3 S11: 0.1759 S12: -0.1844 S13: -0.0041 REMARK 3 S21: -0.1545 S22: -0.0507 S23: -0.5002 REMARK 3 S31: 0.6524 S32: 0.5811 S33: 0.0101 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3527 -11.0720 20.0403 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1238 REMARK 3 T33: 0.1905 T12: -0.0227 REMARK 3 T13: 0.0150 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 3.0017 L22: 2.8455 REMARK 3 L33: 4.4443 L12: -1.3222 REMARK 3 L13: 3.3652 L23: -0.8079 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0789 S13: 0.1157 REMARK 3 S21: 0.1131 S22: 0.0753 S23: 0.4339 REMARK 3 S31: 0.0531 S32: -0.2599 S33: -0.0979 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 69.267 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.72 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML BRDT, 25MM HEPES PH 7.5, 75MM REMARK 280 SODIUM CHLORIDE, 0.5MM DTT, 50MM MES PH 6.5, 0.1M AMMONIUM, REMARK 280 SULFATE, 15% PEG MME 5,000, 10% DMSO, 1 MM VOLASERTIB, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 137 REMARK 465 GLY B 25 REMARK 465 ALA B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 414 2.09 REMARK 500 O HOH A 404 O HOH A 413 2.12 REMARK 500 O HOH A 392 O HOH A 408 2.16 REMARK 500 O HOH A 404 O HOH A 410 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IBI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IBI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VBO RELATED DB: PDB REMARK 900 RELATED ID: 5VBP RELATED DB: PDB REMARK 900 RELATED ID: 5VBQ RELATED DB: PDB DBREF 5VBR A 29 137 UNP Q58F21 BRDT_HUMAN 42 150 DBREF 5VBR B 29 137 UNP Q58F21 BRDT_HUMAN 42 150 SEQADV 5VBR GLY A 25 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR ALA A 26 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR ALA A 27 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR SER A 28 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR GLY B 25 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR ALA B 26 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR ALA B 27 UNP Q58F21 EXPRESSION TAG SEQADV 5VBR SER B 28 UNP Q58F21 EXPRESSION TAG SEQRES 1 A 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 A 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 A 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 A 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 A 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 A 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 A 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 A 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 A 113 LYS LEU SER GLN MET PRO GLN GLU GLU SEQRES 1 B 113 GLY ALA ALA SER THR ASN GLN LEU GLN TYR LEU GLN LYS SEQRES 2 B 113 VAL VAL LEU LYS ASP LEU TRP LYS HIS SER PHE SER TRP SEQRES 3 B 113 PRO PHE GLN ARG PRO VAL ASP ALA VAL LYS LEU GLN LEU SEQRES 4 B 113 PRO ASP TYR TYR THR ILE ILE LYS ASN PRO MET ASP LEU SEQRES 5 B 113 ASN THR ILE LYS LYS ARG LEU GLU ASN LYS TYR TYR ALA SEQRES 6 B 113 LYS ALA SER GLU CYS ILE GLU ASP PHE ASN THR MET PHE SEQRES 7 B 113 SER ASN CYS TYR LEU TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 8 B 113 VAL LEU MET ALA GLN ALA LEU GLU LYS LEU PHE MET GLN SEQRES 9 B 113 LYS LEU SER GLN MET PRO GLN GLU GLU HET IBI A 201 45 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET CL A 208 1 HET IBI B 201 45 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET CL B 207 1 HETNAM IBI N-{TRANS-4-[4-(CYCLOPROPYLMETHYL)PIPERAZIN-1- HETNAM 2 IBI YL]CYCLOHEXYL}-4-{[(7R)-7-ETHYL-5-METHYL-8-(1- HETNAM 3 IBI METHYLETHYL)-6-OXO-5,6,7,8-TETRAHYDROPTERIDIN-2- HETNAM 4 IBI YL]AMINO}-3-METHOXYBENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN IBI VOLASERTIB HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IBI 2(C34 H50 N8 O3) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 10 CL 2(CL 1-) FORMUL 18 HOH *224(H2 O) HELIX 1 AA1 ALA A 26 VAL A 38 1 13 HELIX 2 AA2 VAL A 38 HIS A 46 1 9 HELIX 3 AA3 SER A 49 GLN A 53 5 5 HELIX 4 AA4 ASP A 57 GLN A 62 1 6 HELIX 5 AA5 ASP A 65 ILE A 70 1 6 HELIX 6 AA6 ASP A 75 ASN A 85 1 11 HELIX 7 AA7 LYS A 90 ASN A 109 1 20 HELIX 8 AA8 ASP A 113 SER A 131 1 19 HELIX 9 AA9 THR B 29 VAL B 38 1 10 HELIX 10 AB1 VAL B 38 HIS B 46 1 9 HELIX 11 AB2 SER B 49 GLN B 53 5 5 HELIX 12 AB3 ASP B 65 ILE B 70 1 6 HELIX 13 AB4 ASP B 75 ASN B 85 1 11 HELIX 14 AB5 LYS B 90 ASN B 109 1 20 HELIX 15 AB6 ASP B 113 SER B 131 1 19 SITE 1 AC1 10 TRP A 50 PRO A 51 LEU A 61 LEU A 63 SITE 2 AC1 10 ASN A 109 HOH A 311 HOH A 318 HOH A 343 SITE 3 AC1 10 HOH A 347 HOH A 376 SITE 1 AC2 6 PHE A 48 TYR A 67 LYS A 71 ASP A 114 SITE 2 AC2 6 HOH A 304 HOH A 357 SITE 1 AC3 8 THR A 100 SER A 103 ASN A 104 HOH A 324 SITE 2 AC3 8 HOH A 378 TYR B 106 GLN B 120 HOH B 335 SITE 1 AC4 3 PRO A 55 ASN A 77 THR A 78 SITE 1 AC5 3 PRO A 134 GLN A 135 GLU A 136 SITE 1 AC6 3 LYS A 86 HOH A 387 HOH A 391 SITE 1 AC7 2 GLN A 128 GLN B 128 SITE 1 AC8 9 PRO B 51 LEU B 61 LEU B 63 ASN B 109 SITE 2 AC8 9 HOH B 308 HOH B 312 HOH B 324 HOH B 336 SITE 3 AC8 9 HOH B 354 SITE 1 AC9 7 TYR A 106 GLN A 120 HOH A 315 SER B 103 SITE 2 AC9 7 ASN B 104 HOH B 350 HOH B 367 SITE 1 AD1 6 PHE B 48 TYR B 67 LYS B 71 ASP B 114 SITE 2 AD1 6 HOH B 340 HOH B 349 SITE 1 AD2 2 PRO B 73 HOH B 304 SITE 1 AD3 3 LEU B 40 TRP B 44 LYS B 80 SITE 1 AD4 5 LEU B 63 PRO B 64 ASP B 65 HOH B 329 SITE 2 AD4 5 HOH B 333 CRYST1 65.450 31.050 69.800 90.00 97.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015279 0.000000 0.001900 0.00000 SCALE2 0.000000 0.032206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014437 0.00000