HEADER TRANSFERASE 31-MAR-17 5VCS TITLE ALPHA-1,6-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE TITLE 2 WITH BOUND ACCEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,6-MANNOSYL-GLYCOPROTEIN 2-BETA-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 29-447; COMPND 6 SYNONYM: BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II, GLCNAC-T II, COMPND 7 GNT-II, MANNOSIDE ACETYLGLUCOSAMINYLTRANSFERASE 2, N-GLYCOSYL- COMPND 8 OLIGOSACCHARIDE-GLYCOPROTEIN N-ACETYLGLUCOSAMINYLTRANSFERASE II; COMPND 9 EC: 2.4.1.143; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGAT2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS GLYCOSYLTRANSFERASE, MGAT2, COMPLEX N-GLY, BRANCHED ACCEPTOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.SANDERS,R.KADIRVELRAJ,Z.A.WOOD REVDAT 7 04-OCT-23 5VCS 1 HETSYN LINK REVDAT 6 29-JUL-20 5VCS 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 01-JAN-20 5VCS 1 REMARK REVDAT 4 16-MAY-18 5VCS 1 JRNL REVDAT 3 02-MAY-18 5VCS 1 JRNL REVDAT 2 18-APR-18 5VCS 1 JRNL REVDAT 1 11-APR-18 5VCS 0 JRNL AUTH R.KADIRVELRAJ,J.Y.YANG,J.H.SANDERS,L.LIU,A.RAMIAH, JRNL AUTH 2 P.K.PRABHAKAR,G.J.BOONS,Z.A.WOOD,K.W.MOREMEN JRNL TITL HUMANN-ACETYLGLUCOSAMINYLTRANSFERASE II SUBSTRATE JRNL TITL 2 RECOGNITION USES A MODULAR ARCHITECTURE THAT INCLUDES A JRNL TITL 3 CONVERGENT EXOSITE. JRNL REF PROC. NATL. ACAD. SCI. V. 115 4637 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29666272 JRNL DOI 10.1073/PNAS.1716988115 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 25457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.6927 - 5.8212 0.99 2999 161 0.2477 0.2511 REMARK 3 2 5.8212 - 4.6207 0.96 2769 148 0.2179 0.2180 REMARK 3 3 4.6207 - 4.0367 0.92 2646 142 0.2028 0.2415 REMARK 3 4 4.0367 - 3.6676 0.92 2611 139 0.2256 0.2771 REMARK 3 5 3.6676 - 3.4047 0.93 2629 137 0.2397 0.2813 REMARK 3 6 3.4047 - 3.2040 0.94 2631 139 0.2638 0.3001 REMARK 3 7 3.2040 - 3.0435 0.94 2614 137 0.3007 0.3174 REMARK 3 8 3.0435 - 2.9111 0.95 2646 143 0.3131 0.3471 REMARK 3 9 2.9111 - 2.7990 0.95 2628 138 0.3301 0.3890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6011 REMARK 3 ANGLE : 0.445 8188 REMARK 3 CHIRALITY : 0.038 900 REMARK 3 PLANARITY : 0.003 1012 REMARK 3 DIHEDRAL : 8.637 3552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7245 -37.2270 28.5899 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.6249 REMARK 3 T33: 0.1560 T12: -0.0543 REMARK 3 T13: 0.0435 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.3713 L22: 0.3769 REMARK 3 L33: 1.2515 L12: -0.2728 REMARK 3 L13: -0.0767 L23: -0.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.1198 S13: -0.0311 REMARK 3 S21: 0.0013 S22: -0.0131 S23: -0.0162 REMARK 3 S31: 0.0902 S32: 0.0660 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8033 -26.3397 67.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.9558 REMARK 3 T33: 0.1583 T12: -0.0666 REMARK 3 T13: 0.0559 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.8833 L22: 0.3843 REMARK 3 L33: 1.6179 L12: 0.2839 REMARK 3 L13: -0.7679 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: -0.2948 S13: 0.1295 REMARK 3 S21: 0.0497 S22: 0.0577 S23: -0.0094 REMARK 3 S31: 0.0595 S32: 0.2474 S33: 0.0103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 86 THROUGH 110 OR REMARK 3 RESID 112 THROUGH 179 OR RESID 181 REMARK 3 THROUGH 293 OR RESID 302 THROUGH 352 OR REMARK 3 RESID 354 THROUGH 356 OR RESID 358 REMARK 3 THROUGH 375 OR RESID 406 THROUGH 445)) REMARK 3 SELECTION : (CHAIN B AND (RESID 86 THROUGH 179 OR REMARK 3 RESID 181 THROUGH 352 OR RESID 354 REMARK 3 THROUGH 356 OR RESID 358 THROUGH 415 OR REMARK 3 RESID 419 THROUGH 445)) REMARK 3 ATOM PAIRS NUMBER : 3068 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 72.668 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.160 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.93 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5VCR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 100 MM HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.90000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 ARG A 30 REMARK 465 GLN A 31 REMARK 465 ARG A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 LEU A 37 REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 LEU A 41 REMARK 465 LEU A 42 REMARK 465 ASP A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 PRO A 46 REMARK 465 ALA A 47 REMARK 465 ARG A 48 REMARK 465 GLY A 49 REMARK 465 ALA A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 GLY A 55 REMARK 465 ASP A 56 REMARK 465 HIS A 57 REMARK 465 PRO A 58 REMARK 465 SER A 59 REMARK 465 VAL A 60 REMARK 465 ALA A 61 REMARK 465 VAL A 62 REMARK 465 GLY A 63 REMARK 465 ILE A 64 REMARK 465 ARG A 65 REMARK 465 ARG A 66 REMARK 465 VAL A 67 REMARK 465 SER A 68 REMARK 465 ASN A 69 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 VAL A 76 REMARK 465 PRO A 77 REMARK 465 ALA A 78 REMARK 465 ASP A 377 REMARK 465 CYS A 378 REMARK 465 GLY A 379 REMARK 465 MET A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 LYS A 383 REMARK 465 LYS A 384 REMARK 465 THR A 385 REMARK 465 CYS A 386 REMARK 465 LYS A 416 REMARK 465 PHE A 417 REMARK 465 THR A 418 REMARK 465 LEU A 446 REMARK 465 GLN A 447 REMARK 465 GLY B 29 REMARK 465 ARG B 30 REMARK 465 GLN B 31 REMARK 465 ARG B 32 REMARK 465 LYS B 33 REMARK 465 ASN B 34 REMARK 465 GLU B 35 REMARK 465 ALA B 36 REMARK 465 LEU B 37 REMARK 465 ALA B 38 REMARK 465 PRO B 39 REMARK 465 PRO B 40 REMARK 465 LEU B 41 REMARK 465 LEU B 42 REMARK 465 ASP B 43 REMARK 465 ALA B 44 REMARK 465 GLU B 45 REMARK 465 PRO B 46 REMARK 465 ALA B 47 REMARK 465 ARG B 48 REMARK 465 GLY B 49 REMARK 465 ALA B 50 REMARK 465 GLY B 51 REMARK 465 GLY B 52 REMARK 465 ARG B 53 REMARK 465 GLY B 54 REMARK 465 GLY B 55 REMARK 465 ASP B 56 REMARK 465 HIS B 57 REMARK 465 PRO B 58 REMARK 465 SER B 59 REMARK 465 VAL B 60 REMARK 465 ALA B 61 REMARK 465 VAL B 62 REMARK 465 GLY B 63 REMARK 465 ILE B 64 REMARK 465 ARG B 65 REMARK 465 ARG B 66 REMARK 465 VAL B 67 REMARK 465 SER B 68 REMARK 465 ASN B 69 REMARK 465 VAL B 70 REMARK 465 SER B 71 REMARK 465 ALA B 72 REMARK 465 ALA B 73 REMARK 465 SER B 74 REMARK 465 LEU B 75 REMARK 465 VAL B 76 REMARK 465 PRO B 77 REMARK 465 ALA B 78 REMARK 465 VAL B 79 REMARK 465 PRO B 80 REMARK 465 GLN B 81 REMARK 465 PRO B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 ASP B 85 REMARK 465 GLY B 111 REMARK 465 TYR B 294 REMARK 465 SER B 295 REMARK 465 ALA B 296 REMARK 465 SER B 297 REMARK 465 ARG B 298 REMARK 465 SER B 299 REMARK 465 PHE B 300 REMARK 465 TYR B 301 REMARK 465 GLY B 376 REMARK 465 ASP B 377 REMARK 465 CYS B 378 REMARK 465 GLY B 379 REMARK 465 MET B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 LYS B 383 REMARK 465 LYS B 384 REMARK 465 THR B 385 REMARK 465 CYS B 386 REMARK 465 ARG B 387 REMARK 465 PRO B 388 REMARK 465 SER B 389 REMARK 465 THR B 390 REMARK 465 GLN B 391 REMARK 465 SER B 392 REMARK 465 ALA B 393 REMARK 465 GLN B 394 REMARK 465 ILE B 395 REMARK 465 GLU B 396 REMARK 465 SER B 397 REMARK 465 LEU B 398 REMARK 465 LEU B 399 REMARK 465 ASN B 400 REMARK 465 ASN B 401 REMARK 465 ASN B 402 REMARK 465 LYS B 403 REMARK 465 GLN B 404 REMARK 465 TYR B 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 117 -68.45 63.99 REMARK 500 HIS A 125 -105.70 -110.78 REMARK 500 ASN A 126 58.13 -153.60 REMARK 500 ASN A 212 39.54 -87.08 REMARK 500 ASP A 343 118.06 -161.90 REMARK 500 SER A 356 -79.66 -134.52 REMARK 500 GLU B 117 -69.63 65.69 REMARK 500 HIS B 125 -105.36 -111.99 REMARK 500 ASN B 126 56.14 -152.14 REMARK 500 ASN B 212 39.94 -87.62 REMARK 500 ASP B 343 117.71 -162.34 REMARK 500 CYS B 357 -32.44 -133.00 REMARK 500 SER B 414 -85.37 -100.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VCM RELATED DB: PDB REMARK 900 RELATED ID: 5VCR RELATED DB: PDB DBREF 5VCS A 29 447 UNP Q10469 MGAT2_HUMAN 29 447 DBREF 5VCS B 29 447 UNP Q10469 MGAT2_HUMAN 29 447 SEQRES 1 A 419 GLY ARG GLN ARG LYS ASN GLU ALA LEU ALA PRO PRO LEU SEQRES 2 A 419 LEU ASP ALA GLU PRO ALA ARG GLY ALA GLY GLY ARG GLY SEQRES 3 A 419 GLY ASP HIS PRO SER VAL ALA VAL GLY ILE ARG ARG VAL SEQRES 4 A 419 SER ASN VAL SER ALA ALA SER LEU VAL PRO ALA VAL PRO SEQRES 5 A 419 GLN PRO GLU ALA ASP ASN LEU THR LEU ARG TYR ARG SER SEQRES 6 A 419 LEU VAL TYR GLN LEU ASN PHE ASP GLN THR LEU ARG ASN SEQRES 7 A 419 VAL ASP LYS ALA GLY THR TRP ALA PRO ARG GLU LEU VAL SEQRES 8 A 419 LEU VAL VAL GLN VAL HIS ASN ARG PRO GLU TYR LEU ARG SEQRES 9 A 419 LEU LEU LEU ASP SER LEU ARG LYS ALA GLN GLY ILE ASP SEQRES 10 A 419 ASN VAL LEU VAL ILE PHE SER HIS ASP PHE TRP SER THR SEQRES 11 A 419 GLU ILE ASN GLN LEU ILE ALA GLY VAL ASN PHE CYS PRO SEQRES 12 A 419 VAL LEU GLN VAL PHE PHE PRO PHE SER ILE GLN LEU TYR SEQRES 13 A 419 PRO ASN GLU PHE PRO GLY SER ASP PRO ARG ASP CYS PRO SEQRES 14 A 419 ARG ASP LEU PRO LYS ASN ALA ALA LEU LYS LEU GLY CYS SEQRES 15 A 419 ILE ASN ALA GLU TYR PRO ASP SER PHE GLY HIS TYR ARG SEQRES 16 A 419 GLU ALA LYS PHE SER GLN THR LYS HIS HIS TRP TRP TRP SEQRES 17 A 419 LYS LEU HIS PHE VAL TRP GLU ARG VAL LYS ILE LEU ARG SEQRES 18 A 419 ASP TYR ALA GLY LEU ILE LEU PHE LEU GLU GLU ASP HIS SEQRES 19 A 419 TYR LEU ALA PRO ASP PHE TYR HIS VAL PHE LYS LYS MET SEQRES 20 A 419 TRP LYS LEU LYS GLN GLN GLU CYS PRO GLU CYS ASP VAL SEQRES 21 A 419 LEU SER LEU GLY THR TYR SER ALA SER ARG SER PHE TYR SEQRES 22 A 419 GLY MET ALA ASP LYS VAL ASP VAL LYS THR TRP LYS SER SEQRES 23 A 419 THR GLU HIS ASN MET GLY LEU ALA LEU THR ARG ASN ALA SEQRES 24 A 419 TYR GLN LYS LEU ILE GLU CYS THR ASP THR PHE CYS THR SEQRES 25 A 419 TYR ASP ASP TYR ASN TRP ASP TRP THR LEU GLN TYR LEU SEQRES 26 A 419 THR VAL SER CYS LEU PRO LYS PHE TRP LYS VAL LEU VAL SEQRES 27 A 419 PRO GLN ILE PRO ARG ILE PHE HIS ALA GLY ASP CYS GLY SEQRES 28 A 419 MET HIS HIS LYS LYS THR CYS ARG PRO SER THR GLN SER SEQRES 29 A 419 ALA GLN ILE GLU SER LEU LEU ASN ASN ASN LYS GLN TYR SEQRES 30 A 419 MET PHE PRO GLU THR LEU THR ILE SER GLU LYS PHE THR SEQRES 31 A 419 VAL VAL ALA ILE SER PRO PRO ARG LYS ASN GLY GLY TRP SEQRES 32 A 419 GLY ASP ILE ARG ASP HIS GLU LEU CYS LYS SER TYR ARG SEQRES 33 A 419 ARG LEU GLN SEQRES 1 B 419 GLY ARG GLN ARG LYS ASN GLU ALA LEU ALA PRO PRO LEU SEQRES 2 B 419 LEU ASP ALA GLU PRO ALA ARG GLY ALA GLY GLY ARG GLY SEQRES 3 B 419 GLY ASP HIS PRO SER VAL ALA VAL GLY ILE ARG ARG VAL SEQRES 4 B 419 SER ASN VAL SER ALA ALA SER LEU VAL PRO ALA VAL PRO SEQRES 5 B 419 GLN PRO GLU ALA ASP ASN LEU THR LEU ARG TYR ARG SER SEQRES 6 B 419 LEU VAL TYR GLN LEU ASN PHE ASP GLN THR LEU ARG ASN SEQRES 7 B 419 VAL ASP LYS ALA GLY THR TRP ALA PRO ARG GLU LEU VAL SEQRES 8 B 419 LEU VAL VAL GLN VAL HIS ASN ARG PRO GLU TYR LEU ARG SEQRES 9 B 419 LEU LEU LEU ASP SER LEU ARG LYS ALA GLN GLY ILE ASP SEQRES 10 B 419 ASN VAL LEU VAL ILE PHE SER HIS ASP PHE TRP SER THR SEQRES 11 B 419 GLU ILE ASN GLN LEU ILE ALA GLY VAL ASN PHE CYS PRO SEQRES 12 B 419 VAL LEU GLN VAL PHE PHE PRO PHE SER ILE GLN LEU TYR SEQRES 13 B 419 PRO ASN GLU PHE PRO GLY SER ASP PRO ARG ASP CYS PRO SEQRES 14 B 419 ARG ASP LEU PRO LYS ASN ALA ALA LEU LYS LEU GLY CYS SEQRES 15 B 419 ILE ASN ALA GLU TYR PRO ASP SER PHE GLY HIS TYR ARG SEQRES 16 B 419 GLU ALA LYS PHE SER GLN THR LYS HIS HIS TRP TRP TRP SEQRES 17 B 419 LYS LEU HIS PHE VAL TRP GLU ARG VAL LYS ILE LEU ARG SEQRES 18 B 419 ASP TYR ALA GLY LEU ILE LEU PHE LEU GLU GLU ASP HIS SEQRES 19 B 419 TYR LEU ALA PRO ASP PHE TYR HIS VAL PHE LYS LYS MET SEQRES 20 B 419 TRP LYS LEU LYS GLN GLN GLU CYS PRO GLU CYS ASP VAL SEQRES 21 B 419 LEU SER LEU GLY THR TYR SER ALA SER ARG SER PHE TYR SEQRES 22 B 419 GLY MET ALA ASP LYS VAL ASP VAL LYS THR TRP LYS SER SEQRES 23 B 419 THR GLU HIS ASN MET GLY LEU ALA LEU THR ARG ASN ALA SEQRES 24 B 419 TYR GLN LYS LEU ILE GLU CYS THR ASP THR PHE CYS THR SEQRES 25 B 419 TYR ASP ASP TYR ASN TRP ASP TRP THR LEU GLN TYR LEU SEQRES 26 B 419 THR VAL SER CYS LEU PRO LYS PHE TRP LYS VAL LEU VAL SEQRES 27 B 419 PRO GLN ILE PRO ARG ILE PHE HIS ALA GLY ASP CYS GLY SEQRES 28 B 419 MET HIS HIS LYS LYS THR CYS ARG PRO SER THR GLN SER SEQRES 29 B 419 ALA GLN ILE GLU SER LEU LEU ASN ASN ASN LYS GLN TYR SEQRES 30 B 419 MET PHE PRO GLU THR LEU THR ILE SER GLU LYS PHE THR SEQRES 31 B 419 VAL VAL ALA ILE SER PRO PRO ARG LYS ASN GLY GLY TRP SEQRES 32 B 419 GLY ASP ILE ARG ASP HIS GLU LEU CYS LYS SER TYR ARG SEQRES 33 B 419 ARG LEU GLN HET NAG C 1 15 HET BMA C 2 11 HET MAN C 3 11 HET NAG C 4 14 HET MAN C 5 11 HET NAG D 1 15 HET BMA D 2 11 HET MAN D 3 11 HET NAG D 4 14 HET MAN D 5 11 HET NAG A 506 14 HET DMS A 507 4 HET DMS A 508 4 HET DMS A 509 4 HET NAG B 506 14 HET PEG B 507 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 6 DMS 3(C2 H6 O S) FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *112(H2 O) HELIX 1 AA1 ASN A 86 GLN A 102 1 17 HELIX 2 AA2 ARG A 127 ALA A 141 1 15 HELIX 3 AA3 SER A 157 GLY A 166 1 10 HELIX 4 AA4 PRO A 201 GLY A 209 1 9 HELIX 5 AA5 CYS A 210 TYR A 215 5 6 HELIX 6 AA6 GLU A 224 ARG A 244 1 21 HELIX 7 AA7 VAL A 245 ARG A 249 5 5 HELIX 8 AA8 ASP A 267 CYS A 283 1 17 HELIX 9 AA9 LYS A 313 ASN A 318 1 6 HELIX 10 AB1 ARG A 325 GLU A 333 1 9 HELIX 11 AB2 CYS A 334 TYR A 341 1 8 HELIX 12 AB3 ASN A 345 SER A 356 1 12 HELIX 13 AB4 PRO A 388 ASN A 402 1 15 HELIX 14 AB5 ASP A 433 SER A 442 1 10 HELIX 15 AB6 TYR A 443 ARG A 445 5 3 HELIX 16 AB7 LEU B 87 GLN B 102 1 16 HELIX 17 AB8 ARG B 127 ALA B 141 1 15 HELIX 18 AB9 SER B 157 GLY B 166 1 10 HELIX 19 AC1 PRO B 201 GLY B 209 1 9 HELIX 20 AC2 GLU B 224 ARG B 244 1 21 HELIX 21 AC3 VAL B 245 ARG B 249 5 5 HELIX 22 AC4 ASP B 267 CYS B 283 1 17 HELIX 23 AC5 LYS B 313 HIS B 317 5 5 HELIX 24 AC6 THR B 324 GLU B 333 1 10 HELIX 25 AC7 CYS B 334 TYR B 341 1 8 HELIX 26 AC8 ASN B 345 CYS B 357 1 13 HELIX 27 AC9 ASP B 433 TYR B 443 1 11 SHEET 1 AA1 9 VAL A 172 PHE A 176 0 SHEET 2 AA1 9 LEU A 148 HIS A 153 1 N PHE A 151 O LEU A 173 SHEET 3 AA1 9 LEU A 118 VAL A 124 1 N LEU A 120 O ILE A 150 SHEET 4 AA1 9 LEU A 254 GLU A 259 1 O LEU A 256 N VAL A 119 SHEET 5 AA1 9 LEU A 321 THR A 324 -1 O LEU A 321 N PHE A 257 SHEET 6 AA1 9 VAL A 288 SER A 290 -1 N LEU A 289 O ALA A 322 SHEET 7 AA1 9 LYS A 363 PRO A 367 1 O LEU A 365 N SER A 290 SHEET 8 AA1 9 LYS A 306 THR A 311 -1 N ASP A 308 O VAL A 366 SHEET 9 AA1 9 THR A 412 ILE A 413 1 O THR A 412 N VAL A 307 SHEET 1 AA2 2 HIS A 262 LEU A 264 0 SHEET 2 AA2 2 ILE A 372 HIS A 374 -1 O PHE A 373 N TYR A 263 SHEET 1 AA3 9 VAL B 172 PHE B 176 0 SHEET 2 AA3 9 LEU B 148 HIS B 153 1 N PHE B 151 O LEU B 173 SHEET 3 AA3 9 LEU B 118 VAL B 124 1 N LEU B 120 O ILE B 150 SHEET 4 AA3 9 LEU B 254 GLU B 259 1 O LEU B 256 N VAL B 119 SHEET 5 AA3 9 LEU B 321 LEU B 323 -1 O LEU B 321 N PHE B 257 SHEET 6 AA3 9 CYS B 286 SER B 290 -1 N LEU B 289 O ALA B 322 SHEET 7 AA3 9 LYS B 363 PRO B 367 1 O LYS B 363 N ASP B 287 SHEET 8 AA3 9 LYS B 306 THR B 311 -1 N ASP B 308 O VAL B 366 SHEET 9 AA3 9 THR B 412 LYS B 416 1 O SER B 414 N VAL B 307 SHEET 1 AA4 2 HIS B 262 LEU B 264 0 SHEET 2 AA4 2 ILE B 372 HIS B 374 -1 O PHE B 373 N TYR B 263 SSBOND 1 CYS A 196 CYS A 210 1555 1555 2.03 SSBOND 2 CYS A 283 CYS A 286 1555 1555 2.03 SSBOND 3 CYS A 334 CYS A 357 1555 1555 2.03 SSBOND 4 CYS A 339 CYS A 440 1555 1555 2.03 SSBOND 5 CYS B 196 CYS B 210 1555 1555 2.03 SSBOND 6 CYS B 283 CYS B 286 1555 1555 2.03 SSBOND 7 CYS B 334 CYS B 357 1555 1555 2.04 SSBOND 8 CYS B 339 CYS B 440 1555 1555 2.03 LINK ND2 ASN A 86 C1 NAG A 506 1555 1555 1.44 LINK ND2 ASN B 86 C1 NAG B 506 1555 1555 1.45 LINK NH2 ARG B 426 O6 NAG D 1 1555 1555 1.30 LINK O4 NAG C 1 C1 BMA C 2 1555 1555 1.45 LINK O3 BMA C 2 C1 MAN C 3 1555 1555 1.44 LINK O6 BMA C 2 C1 MAN C 5 1555 1555 1.44 LINK O2 MAN C 3 C1 NAG C 4 1555 1555 1.44 LINK O4 NAG D 1 C1 BMA D 2 1555 1555 1.46 LINK O3 BMA D 2 C1 MAN D 3 1555 1555 1.44 LINK O6 BMA D 2 C1 MAN D 5 1555 1555 1.44 LINK O2 MAN D 3 C1 NAG D 4 1555 1555 1.44 CISPEP 1 PHE A 188 PRO A 189 0 4.84 CISPEP 2 PHE B 188 PRO B 189 0 3.93 CRYST1 46.280 129.160 175.800 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005688 0.00000