HEADER GENE REGULATION 01-APR-17 5VDC TITLE CRYSTAL STRUCTURE OF THE HUMAN DPF2 TANDEM PHD FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN UBI-D4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DPF2 TANDEM PHD FINGER DOMAIN (UNP RESIDUES 270-391); COMPND 5 SYNONYM: APOPTOSIS RESPONSE ZINC FINGER PROTEIN,BRG1-ASSOCIATED COMPND 6 FACTOR 45D,BAF45D,D4,ZINC AND DOUBLE PHD FINGERS FAMILY 2,PROTEIN COMPND 7 REQUIEM; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPF2, BAF45D, REQ, UBID4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE READER, TANDEM PHD FINGER, AML, MYELOID DIFFERENTIATION, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR F.M.HUBER,A.M.DAVENPORT,A.HOELZ REVDAT 6 06-MAR-24 5VDC 1 REMARK REVDAT 5 20-NOV-19 5VDC 1 REMARK REVDAT 4 27-SEP-17 5VDC 1 REMARK REVDAT 3 21-JUN-17 5VDC 1 JRNL REVDAT 2 07-JUN-17 5VDC 1 JRNL REVDAT 1 24-MAY-17 5VDC 0 JRNL AUTH F.M.HUBER,S.M.GREENBLATT,A.M.DAVENPORT,C.MARTINEZ,Y.XU, JRNL AUTH 2 L.P.VU,S.D.NIMER,A.HOELZ JRNL TITL HISTONE-BINDING OF DPF2 MEDIATES ITS REPRESSIVE ROLE IN JRNL TITL 2 MYELOID DIFFERENTIATION. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6016 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533407 JRNL DOI 10.1073/PNAS.1700328114 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7739 - 3.0605 0.99 2970 157 0.1472 0.1943 REMARK 3 2 3.0605 - 2.4292 0.99 2845 149 0.1540 0.2077 REMARK 3 3 2.4292 - 2.1222 0.99 2795 148 0.1157 0.1663 REMARK 3 4 2.1222 - 1.9281 0.99 2803 145 0.1113 0.1498 REMARK 3 5 1.9281 - 1.7899 0.99 2761 144 0.1157 0.1643 REMARK 3 6 1.7899 - 1.6844 0.99 2759 146 0.1411 0.2349 REMARK 3 7 1.6844 - 1.6000 0.98 2733 146 0.1824 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1024 REMARK 3 ANGLE : 1.285 1386 REMARK 3 CHIRALITY : 0.080 140 REMARK 3 PLANARITY : 0.006 187 REMARK 3 DIHEDRAL : 14.418 389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2818, 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 26.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 26.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 0.15 M REMARK 280 AMMONIUM CITRATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.65000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 26.65000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 26.65000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 26.65000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 26.65000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.65000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 53.75000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 26.65000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 53.75000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 53.75000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 118 REMARK 465 GLN A 119 REMARK 465 ASN A 120 REMARK 465 SER A 121 REMARK 465 SER A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 52 O HOH A 303 1.49 REMARK 500 O HOH A 351 O HOH A 356 1.85 REMARK 500 O1 EDO A 207 O HOH A 301 2.16 REMARK 500 O HOH A 316 O HOH A 317 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 411 O HOH A 416 7555 2.07 REMARK 500 O3 GOL A 205 O3 GOL A 205 5655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -66.33 -95.18 REMARK 500 LYS A 110 -121.68 52.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 417 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 7 SG 110.8 REMARK 620 3 HIS A 34 ND1 102.1 100.2 REMARK 620 4 CYS A 37 SG 113.1 114.7 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 29 SG 112.2 REMARK 620 3 CYS A 55 SG 113.6 109.9 REMARK 620 4 CYS A 58 SG 103.9 109.4 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 64 SG 110.4 REMARK 620 3 HIS A 84 ND1 101.2 97.5 REMARK 620 4 CYS A 87 SG 117.1 112.6 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 CYS A 79 SG 106.5 REMARK 620 3 CYS A 102 SG 111.5 112.5 REMARK 620 4 CYS A 105 SG 110.3 104.6 111.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 209 DBREF 5VDC A 1 122 UNP Q92785 REQU_HUMAN 270 391 SEQADV 5VDC GLY A -3 UNP Q92785 EXPRESSION TAG SEQADV 5VDC MET A -2 UNP Q92785 EXPRESSION TAG SEQADV 5VDC GLY A -1 UNP Q92785 EXPRESSION TAG SEQADV 5VDC SER A 0 UNP Q92785 EXPRESSION TAG SEQRES 1 A 126 GLY MET GLY SER ASN ASN TYR CYS ASP PHE CYS LEU GLY SEQRES 2 A 126 ASP SER LYS ILE ASN LYS LYS THR GLY GLN PRO GLU GLU SEQRES 3 A 126 LEU VAL SER CYS SER ASP CYS GLY ARG SER GLY HIS PRO SEQRES 4 A 126 SER CYS LEU GLN PHE THR PRO VAL MET MET ALA ALA VAL SEQRES 5 A 126 LYS THR TYR ARG TRP GLN CYS ILE GLU CYS LYS CYS CYS SEQRES 6 A 126 ASN ILE CYS GLY THR SER GLU ASN ASP ASP GLN LEU LEU SEQRES 7 A 126 PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR CYS SEQRES 8 A 126 LEU THR PRO SER MET SER GLU PRO PRO GLU GLY SER TRP SEQRES 9 A 126 SER CYS HIS LEU CYS LEU ASP LEU LEU LYS GLU LYS ALA SEQRES 10 A 126 SER ILE TYR GLN ASN GLN ASN SER SER HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET GOL A 205 14 HET GOL A 206 14 HET EDO A 207 10 HET EDO A 208 10 HET EDO A 209 10 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 4(ZN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *117(H2 O) HELIX 1 AA1 THR A 41 VAL A 48 1 8 HELIX 2 AA2 ASN A 69 ASP A 71 5 3 HELIX 3 AA3 CYS A 102 LYS A 110 1 9 HELIX 4 AA4 GLU A 111 ALA A 113 5 3 SHEET 1 AA1 2 VAL A 24 SER A 25 0 SHEET 2 AA1 2 SER A 32 GLY A 33 -1 O GLY A 33 N VAL A 24 SHEET 1 AA2 2 LEU A 73 PHE A 75 0 SHEET 2 AA2 2 GLY A 82 HIS A 84 -1 O TYR A 83 N LEU A 74 LINK SG CYS A 4 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 7 ZN ZN A 201 1555 1555 2.28 LINK SG CYS A 26 ZN ZN A 202 1555 1555 2.36 LINK SG CYS A 29 ZN ZN A 202 1555 1555 2.30 LINK ND1 HIS A 34 ZN ZN A 201 1555 1555 2.05 LINK SG CYS A 37 ZN ZN A 201 1555 1555 2.28 LINK SG CYS A 55 ZN ZN A 202 1555 1555 2.32 LINK SG CYS A 58 ZN ZN A 202 1555 1555 2.37 LINK SG CYS A 61 ZN ZN A 204 1555 1555 2.36 LINK SG CYS A 64 ZN ZN A 204 1555 1555 2.30 LINK SG CYS A 76 ZN ZN A 203 1555 1555 2.33 LINK SG CYS A 79 ZN ZN A 203 1555 1555 2.33 LINK ND1 HIS A 84 ZN ZN A 204 1555 1555 2.05 LINK SG CYS A 87 ZN ZN A 204 1555 1555 2.24 LINK SG CYS A 102 ZN ZN A 203 1555 1555 2.34 LINK SG CYS A 105 ZN ZN A 203 1555 1555 2.32 CISPEP 1 THR A 89 PRO A 90 0 -2.82 SITE 1 AC1 4 CYS A 4 CYS A 7 HIS A 34 CYS A 37 SITE 1 AC2 4 CYS A 26 CYS A 29 CYS A 55 CYS A 58 SITE 1 AC3 4 CYS A 76 CYS A 79 CYS A 102 CYS A 105 SITE 1 AC4 4 CYS A 61 CYS A 64 HIS A 84 CYS A 87 SITE 1 AC5 5 PHE A 6 CYS A 55 ILE A 56 HOH A 310 SITE 2 AC5 5 HOH A 317 SITE 1 AC6 2 PRO A 90 SER A 91 SITE 1 AC7 9 ILE A 63 HIS A 103 LEU A 104 HOH A 301 SITE 2 AC7 9 HOH A 306 HOH A 308 HOH A 314 HOH A 350 SITE 3 AC7 9 HOH A 351 SITE 1 AC8 6 ARG A 52 GLN A 54 CYS A 61 ASN A 62 SITE 2 AC8 6 HOH A 312 HOH A 373 SITE 1 AC9 7 GLY A 98 SER A 99 SER A 114 ILE A 115 SITE 2 AC9 7 TYR A 116 GLN A 117 HOH A 302 CRYST1 107.500 107.500 53.300 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018762 0.00000