HEADER TRANSFERASE 03-APR-17 5VDO TITLE HUMAN CYCLIC GMP-AMP SYNTHASE (CGAS) IN COMPLEX WITH 2',2'-CGAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 6 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, STING, CGAMP EXPDTA X-RAY DIFFRACTION AUTHOR L.J.BYRNES,J.D.HALL REVDAT 4 04-OCT-23 5VDO 1 REMARK REVDAT 3 06-DEC-17 5VDO 1 JRNL REVDAT 2 04-OCT-17 5VDO 1 JRNL REVDAT 1 27-SEP-17 5VDO 0 JRNL AUTH J.HALL,E.C.RALPH,S.SHANKER,H.WANG,L.J.BYRNES,R.HORST,J.WONG, JRNL AUTH 2 A.BRAULT,D.DUMLAO,J.F.SMITH,L.A.DAKIN,D.C.SCHMITT, JRNL AUTH 3 J.TRUJILLO,F.VINCENT,M.GRIFFOR,A.E.AULABAUGH JRNL TITL THE CATALYTIC MECHANISM OF CYCLIC GMP-AMP SYNTHASE (CGAS) JRNL TITL 2 AND IMPLICATIONS FOR INNATE IMMUNITY AND INHIBITION. JRNL REF PROTEIN SCI. V. 26 2367 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28940468 JRNL DOI 10.1002/PRO.3304 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1999 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.7264 - 5.5013 0.99 2773 155 0.1980 0.2420 REMARK 3 2 5.5013 - 4.3671 1.00 2669 154 0.1860 0.2338 REMARK 3 3 4.3671 - 3.8152 1.00 2689 133 0.1953 0.2683 REMARK 3 4 3.8152 - 3.4664 1.00 2656 158 0.2204 0.2547 REMARK 3 5 3.4664 - 3.2180 0.99 2637 133 0.2765 0.3780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5904 REMARK 3 ANGLE : 0.577 7966 REMARK 3 CHIRALITY : 0.029 879 REMARK 3 PLANARITY : 0.003 996 REMARK 3 DIHEDRAL : 12.582 2182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1731 -2.9216 -23.5480 REMARK 3 T TENSOR REMARK 3 T11: 1.1253 T22: 0.7581 REMARK 3 T33: 0.6022 T12: 0.0291 REMARK 3 T13: -0.0936 T23: 0.2801 REMARK 3 L TENSOR REMARK 3 L11: 3.8161 L22: 4.1640 REMARK 3 L33: 5.4011 L12: 1.1550 REMARK 3 L13: 4.3983 L23: 1.6316 REMARK 3 S TENSOR REMARK 3 S11: 1.8568 S12: 0.8612 S13: -1.7220 REMARK 3 S21: -0.0119 S22: -1.0049 S23: -0.7658 REMARK 3 S31: 0.8282 S32: 1.0871 S33: -0.9315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0100 3.9920 -20.6852 REMARK 3 T TENSOR REMARK 3 T11: 1.0900 T22: 1.8527 REMARK 3 T33: 1.1369 T12: -0.3209 REMARK 3 T13: 0.2236 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 8.4293 L22: 8.5180 REMARK 3 L33: 5.2513 L12: 5.3978 REMARK 3 L13: 6.5279 L23: 5.0687 REMARK 3 S TENSOR REMARK 3 S11: -1.2900 S12: -1.3275 S13: 0.7480 REMARK 3 S21: -0.7622 S22: -0.1256 S23: 0.3315 REMARK 3 S31: 1.4716 S32: 0.8604 S33: 1.3930 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2829 16.6646 -20.5952 REMARK 3 T TENSOR REMARK 3 T11: 0.7126 T22: 1.7854 REMARK 3 T33: 1.1665 T12: -0.3416 REMARK 3 T13: 0.0348 T23: 0.3024 REMARK 3 L TENSOR REMARK 3 L11: 4.7226 L22: 9.2102 REMARK 3 L33: 3.3972 L12: -2.0994 REMARK 3 L13: 0.1026 L23: 1.8816 REMARK 3 S TENSOR REMARK 3 S11: 0.1880 S12: -0.0203 S13: -0.0693 REMARK 3 S21: -0.3839 S22: 0.1047 S23: -1.7912 REMARK 3 S31: -0.4344 S32: 1.5740 S33: -0.3817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2916 11.2474 -23.7312 REMARK 3 T TENSOR REMARK 3 T11: 1.1134 T22: 0.9008 REMARK 3 T33: 0.6469 T12: -0.0361 REMARK 3 T13: 0.0527 T23: 0.0917 REMARK 3 L TENSOR REMARK 3 L11: 3.2771 L22: 4.4814 REMARK 3 L33: 4.9509 L12: -3.5185 REMARK 3 L13: -3.8438 L23: 4.4177 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.3093 S13: 0.1280 REMARK 3 S21: -1.1047 S22: -0.1983 S23: -0.3795 REMARK 3 S31: -0.3484 S32: 0.3142 S33: 0.1485 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9657 15.4682 -12.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.6518 T22: 0.4792 REMARK 3 T33: 0.4505 T12: -0.1202 REMARK 3 T13: 0.0116 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 3.4508 L22: 4.9535 REMARK 3 L33: 6.6563 L12: 1.0819 REMARK 3 L13: -2.2763 L23: -1.6456 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.2740 S13: -0.3431 REMARK 3 S21: 0.1362 S22: -0.2129 S23: -0.6711 REMARK 3 S31: -0.5049 S32: 0.6926 S33: 0.0962 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.3971 15.3168 -26.1616 REMARK 3 T TENSOR REMARK 3 T11: 0.7016 T22: 0.3726 REMARK 3 T33: 0.2692 T12: -0.1059 REMARK 3 T13: 0.0082 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 5.6154 L22: 3.4351 REMARK 3 L33: 6.2804 L12: 0.4228 REMARK 3 L13: 0.1255 L23: -0.4622 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.5125 S13: 0.1292 REMARK 3 S21: -0.3471 S22: 0.0744 S23: 0.0130 REMARK 3 S31: 0.0503 S32: 0.4579 S33: -0.0899 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0761 5.6595 19.4481 REMARK 3 T TENSOR REMARK 3 T11: 0.7427 T22: 1.0777 REMARK 3 T33: 0.8907 T12: -0.0088 REMARK 3 T13: 0.1455 T23: 0.2168 REMARK 3 L TENSOR REMARK 3 L11: 6.7973 L22: 4.5167 REMARK 3 L33: 5.1059 L12: 0.2177 REMARK 3 L13: -1.4577 L23: 1.0832 REMARK 3 S TENSOR REMARK 3 S11: 0.2272 S12: 0.1218 S13: 0.5647 REMARK 3 S21: -0.2526 S22: 0.0116 S23: -1.7380 REMARK 3 S31: -0.5175 S32: 1.7035 S33: -0.3177 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9976 9.7277 29.5226 REMARK 3 T TENSOR REMARK 3 T11: 1.0284 T22: 2.0633 REMARK 3 T33: 1.3598 T12: -0.0998 REMARK 3 T13: -0.2282 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 8.4369 L22: 5.4867 REMARK 3 L33: 8.3042 L12: -6.2010 REMARK 3 L13: -3.0562 L23: 4.8062 REMARK 3 S TENSOR REMARK 3 S11: -0.2886 S12: -1.8864 S13: 0.6516 REMARK 3 S21: 1.0098 S22: 1.0053 S23: -1.7003 REMARK 3 S31: -0.1731 S32: 1.6411 S33: -0.7041 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 326 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5364 -0.1955 20.4228 REMARK 3 T TENSOR REMARK 3 T11: 0.5842 T22: 0.3393 REMARK 3 T33: 0.3813 T12: 0.0657 REMARK 3 T13: -0.0036 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.4930 L22: 3.5062 REMARK 3 L33: 6.4068 L12: -0.2581 REMARK 3 L13: -0.0934 L23: -1.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.2161 S13: -0.1163 REMARK 3 S21: 0.1340 S22: -0.0128 S23: -0.4469 REMARK 3 S31: 0.1317 S32: 0.5901 S33: 0.0197 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3287 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227162. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14176 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.218 REMARK 200 RESOLUTION RANGE LOW (A) : 55.718 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.16500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4O67 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 0.2 M AMMONIUM REMARK 280 CITRATE PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 108.21150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 108.21150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 PHE A 522 REMARK 465 SER B 213 REMARK 465 TYR B 214 REMARK 465 TYR B 215 REMARK 465 GLU B 216 REMARK 465 HIS B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 ASN A 289 CG OD1 ND2 REMARK 470 ASP A 290 CG OD1 OD2 REMARK 470 ASP A 293 CG OD1 OD2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 ASP A 295 CG OD1 OD2 REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 THR B 211 OG1 CG2 REMARK 470 ILE B 220 CG1 CG2 CD1 REMARK 470 SER B 221 OG REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 ASP B 295 CG OD1 OD2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 GLU B 385 CG CD OE1 OE2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLU B 418 CG CD OE1 OE2 REMARK 470 LYS B 425 CG CD CE NZ REMARK 470 ASP B 426 CG OD1 OD2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 GLU B 521 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 203 31.48 -96.62 REMARK 500 ASN A 210 93.61 -65.33 REMARK 500 ARG A 246 -6.16 64.47 REMARK 500 GLU A 267 52.45 -95.09 REMARK 500 ASP A 290 77.03 48.66 REMARK 500 LYS A 315 -36.61 -141.17 REMARK 500 TRP A 343 -70.81 -87.96 REMARK 500 SER A 345 147.70 75.89 REMARK 500 LEU A 354 31.74 -90.41 REMARK 500 PRO A 361 95.40 -67.50 REMARK 500 ASN A 368 40.54 -96.97 REMARK 500 GLU A 372 18.05 55.21 REMARK 500 PHE A 516 71.58 52.01 REMARK 500 PHE B 203 32.30 -95.12 REMARK 500 ASN B 210 92.13 -65.64 REMARK 500 ARG B 246 -6.00 63.81 REMARK 500 GLU B 267 52.53 -95.82 REMARK 500 ASP B 293 -9.56 66.08 REMARK 500 LYS B 315 -37.22 -140.83 REMARK 500 TRP B 343 -71.45 -87.87 REMARK 500 SER B 345 147.30 75.37 REMARK 500 LEU B 354 31.66 -90.69 REMARK 500 PRO B 361 96.72 -67.45 REMARK 500 GLU B 372 21.15 -72.53 REMARK 500 PHE B 516 72.09 52.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 126.0 REMARK 620 3 CYS A 397 SG 104.2 120.0 REMARK 620 4 CYS A 404 SG 101.9 103.7 94.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 121.3 REMARK 620 3 CYS B 397 SG 107.8 120.8 REMARK 620 4 CYS B 404 SG 101.5 101.1 99.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1YC A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1YC B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VDP RELATED DB: PDB REMARK 900 RELATED ID: 5VDQ RELATED DB: PDB REMARK 900 RELATED ID: 5VDR RELATED DB: PDB REMARK 900 RELATED ID: 5VDS RELATED DB: PDB REMARK 900 RELATED ID: 5VDT RELATED DB: PDB REMARK 900 RELATED ID: 5VDU RELATED DB: PDB REMARK 900 RELATED ID: 5VDV RELATED DB: PDB REMARK 900 RELATED ID: 5VDW RELATED DB: PDB DBREF 5VDO A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 5VDO B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQADV 5VDO MET A 160 UNP Q8N884 EXPRESSION TAG SEQADV 5VDO MET B 160 UNP Q8N884 EXPRESSION TAG SEQRES 1 A 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 A 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 A 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 A 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 A 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 A 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 A 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 A 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 A 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 A 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 A 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 A 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 A 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 A 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 A 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 A 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 A 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 A 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 A 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 A 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 A 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 A 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 A 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 A 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 A 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 A 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 A 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 A 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 363 MET GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU SEQRES 2 B 363 LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET SEQRES 3 B 363 VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS SEQRES 4 B 363 CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR SEQRES 5 B 363 GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN SEQRES 6 B 363 GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE SEQRES 7 B 363 GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE SEQRES 8 B 363 VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER SEQRES 9 B 363 GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET SEQRES 10 B 363 LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN SEQRES 11 B 363 ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG SEQRES 12 B 363 GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS SEQRES 13 B 363 ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SEQRES 14 B 363 SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN SEQRES 15 B 363 ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU SEQRES 16 B 363 LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY SEQRES 17 B 363 ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER SEQRES 18 B 363 HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER SEQRES 19 B 363 LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG SEQRES 20 B 363 LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN SEQRES 21 B 363 LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS SEQRES 22 B 363 PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL SEQRES 23 B 363 CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS SEQRES 24 B 363 ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE SEQRES 25 B 363 LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE SEQRES 26 B 363 ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP SEQRES 27 B 363 LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR SEQRES 28 B 363 GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET 1YC A 602 45 HET ZN B 601 1 HET 1YC B 602 45 HETNAM ZN ZINC ION HETNAM 1YC 2-AMINO-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6- HETNAM 2 1YC AMINO-9H-PURIN-9-YL)-3,11,17,18-TETRAHYDROXY-3,11- HETNAM 3 1YC DIOXIDO-2,4,7,10,12,15-HEXAOXA-3,11- HETNAM 4 1YC DIPHOSPHATRICYCLO[12.2.1.1~6,9~]OCTADEC-8-YL]-1,9- HETNAM 5 1YC DIHYDRO-6H-PURIN-6-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 1YC 2(C20 H24 N10 O13 P2) FORMUL 7 HOH *2(H2 O) HELIX 1 AA1 GLY A 161 LYS A 173 1 13 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 CYS A 199 ASP A 200 5 2 HELIX 4 AA4 SER A 201 ARG A 204 5 4 HELIX 5 AA5 ASN A 260 GLN A 264 5 5 HELIX 6 AA6 SER A 272 ILE A 288 1 17 HELIX 7 AA7 PRO A 331 GLN A 335 5 5 HELIX 8 AA8 LEU A 344 LEU A 354 1 11 HELIX 9 AA9 PHE A 379 ASN A 389 1 11 HELIX 10 AB1 CYS A 405 PHE A 424 1 20 HELIX 11 AB2 SER A 434 ASN A 449 1 16 HELIX 12 AB3 GLN A 451 LYS A 458 5 8 HELIX 13 AB4 ASP A 459 GLU A 478 1 20 HELIX 14 AB5 ASP A 497 ASN A 514 1 18 HELIX 15 AB6 PHE A 516 GLU A 521 5 6 HELIX 16 AB7 GLY B 161 LYS B 173 1 13 HELIX 17 AB8 SER B 175 LYS B 198 1 24 HELIX 18 AB9 CYS B 199 ASP B 200 5 2 HELIX 19 AC1 SER B 201 ARG B 204 5 4 HELIX 20 AC2 ASN B 260 GLN B 264 5 5 HELIX 21 AC3 SER B 272 ILE B 288 1 17 HELIX 22 AC4 PRO B 331 GLN B 335 5 5 HELIX 23 AC5 LEU B 344 LEU B 354 1 11 HELIX 24 AC6 PHE B 379 ASN B 389 1 11 HELIX 25 AC7 CYS B 405 PHE B 424 1 20 HELIX 26 AC8 SER B 434 ASN B 449 1 16 HELIX 27 AC9 GLN B 451 LYS B 458 5 8 HELIX 28 AD1 ASP B 459 GLU B 478 1 20 HELIX 29 AD2 ASP B 497 ASN B 514 1 18 SHEET 1 AA1 5 VAL A 206 LEU A 208 0 SHEET 2 AA1 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA1 5 ILE A 316 GLU A 325 1 O THR A 321 N PHE A 230 SHEET 4 AA1 5 VAL A 308 ILE A 312 -1 N ILE A 312 O ILE A 316 SHEET 5 AA1 5 VAL A 296 MET A 298 -1 N ILE A 297 O LEU A 311 SHEET 1 AA2 4 ILE A 237 GLU A 241 0 SHEET 2 AA2 4 TYR A 248 PHE A 253 -1 O LYS A 252 N GLN A 238 SHEET 3 AA2 4 TRP A 375 SER A 378 -1 O TRP A 375 N TYR A 249 SHEET 4 AA2 4 TYR A 358 PRO A 361 -1 N VAL A 360 O ARG A 376 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 SHEET 1 AA4 5 VAL B 206 LEU B 209 0 SHEET 2 AA4 5 GLU B 225 GLU B 233 -1 O LYS B 231 N GLY B 207 SHEET 3 AA4 5 ILE B 316 GLU B 325 1 O ALA B 323 N PHE B 230 SHEET 4 AA4 5 VAL B 308 ILE B 312 -1 N ILE B 312 O ILE B 316 SHEET 5 AA4 5 VAL B 296 MET B 298 -1 N ILE B 297 O LEU B 311 SHEET 1 AA5 4 ILE B 237 GLU B 241 0 SHEET 2 AA5 4 TYR B 248 PHE B 253 -1 O LYS B 252 N GLN B 238 SHEET 3 AA5 4 TRP B 375 SER B 378 -1 O TRP B 375 N TYR B 249 SHEET 4 AA5 4 TYR B 358 PRO B 361 -1 N VAL B 360 O ARG B 376 SHEET 1 AA6 2 LEU B 266 GLU B 267 0 SHEET 2 AA6 2 ILE B 270 LEU B 271 -1 O ILE B 270 N GLU B 267 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.08 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.45 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.40 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.34 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.09 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.54 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.30 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.33 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 SITE 1 AC2 6 SER A 305 ASP A 319 LYS A 362 ARG A 376 SITE 2 AC2 6 SER A 434 TYR A 436 SITE 1 AC3 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC4 7 SER B 305 ALA B 307 ASP B 319 LYS B 362 SITE 2 AC4 7 ARG B 376 SER B 434 TYR B 436 CRYST1 216.423 47.670 88.861 90.00 110.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004621 0.000000 0.001698 0.00000 SCALE2 0.000000 0.020977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011989 0.00000