HEADER HYDROLASE 04-APR-17 5VEJ TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF A FLUORIDE-INHIBITED ORGANO- TITLE 2 PHOSPHATE-DEGRADING METALLOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM RADIOBACTER; SOURCE 3 ORGANISM_COMMON: AGROBACTERIUM TUMEFACIENS; SOURCE 4 ORGANISM_TAXID: 358; SOURCE 5 GENE: OPDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS METALLOHYDROLASE, FLUORIDE, INHIBITED, ORGANO-PHOSPHATE-DEGRADING, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SELLECK REVDAT 4 15-NOV-23 5VEJ 1 REMARK REVDAT 3 04-OCT-23 5VEJ 1 REMARK REVDAT 2 03-JAN-18 5VEJ 1 JRNL REVDAT 1 19-JUL-17 5VEJ 0 JRNL AUTH C.SELLECK,L.W.GUDDAT,D.L.OLLIS,G.SCHENK,M.M.PEDROSO JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF A FLUORIDE-INHIBITED JRNL TITL 2 ORGANOPHOSPHATE-DEGRADING METALLOHYDROLASE. JRNL REF J. INORG. BIOCHEM. V. 177 287 2017 JRNL REFN ISSN 1873-3344 JRNL PMID 28673485 JRNL DOI 10.1016/J.JINORGBIO.2017.06.013 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 105067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7600 - 3.1338 0.98 7533 152 0.1313 0.1346 REMARK 3 2 3.1338 - 2.4876 1.00 7451 146 0.1170 0.1399 REMARK 3 3 2.4876 - 2.1732 1.00 7411 141 0.1100 0.1281 REMARK 3 4 2.1732 - 1.9745 1.00 7385 144 0.1131 0.1193 REMARK 3 5 1.9745 - 1.8330 1.00 7388 140 0.1236 0.1457 REMARK 3 6 1.8330 - 1.7249 1.00 7376 143 0.1305 0.1364 REMARK 3 7 1.7249 - 1.6385 1.00 7355 144 0.1317 0.1442 REMARK 3 8 1.6385 - 1.5672 1.00 7334 142 0.1363 0.1423 REMARK 3 9 1.5672 - 1.5068 1.00 7368 144 0.1434 0.1700 REMARK 3 10 1.5068 - 1.4548 1.00 7301 142 0.1524 0.1821 REMARK 3 11 1.4548 - 1.4094 1.00 7356 142 0.1670 0.1836 REMARK 3 12 1.4094 - 1.3691 1.00 7311 141 0.1785 0.1977 REMARK 3 13 1.3691 - 1.3330 1.00 7349 140 0.1879 0.2228 REMARK 3 14 1.3330 - 1.3005 0.98 7148 140 0.2091 0.1959 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2686 REMARK 3 ANGLE : 1.046 3661 REMARK 3 CHIRALITY : 0.080 413 REMARK 3 PLANARITY : 0.007 483 REMARK 3 DIHEDRAL : 13.464 991 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4878 -51.5985 60.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0744 REMARK 3 T33: 0.0968 T12: 0.0064 REMARK 3 T13: 0.0046 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.0429 L22: 2.7190 REMARK 3 L33: 1.6954 L12: -0.3978 REMARK 3 L13: -0.3762 L23: 1.5552 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.2429 S13: -0.2554 REMARK 3 S21: -0.1891 S22: -0.0229 S23: -0.0157 REMARK 3 S31: -0.0315 S32: 0.0255 S33: -0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9114 -40.4275 80.9671 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.1430 REMARK 3 T33: 0.1377 T12: -0.0282 REMARK 3 T13: 0.0088 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.7163 L22: 1.8406 REMARK 3 L33: 1.4473 L12: 0.5835 REMARK 3 L13: 0.5973 L23: -0.9197 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: -0.1561 S13: -0.0524 REMARK 3 S21: 0.0500 S22: -0.0613 S23: -0.0546 REMARK 3 S31: 0.0097 S32: 0.0306 S33: -0.0117 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0056 -53.2679 78.2672 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1206 REMARK 3 T33: 0.1549 T12: -0.0042 REMARK 3 T13: -0.0077 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.2361 L22: 3.6474 REMARK 3 L33: 1.9015 L12: 3.1813 REMARK 3 L13: 1.8978 L23: 1.3995 REMARK 3 S TENSOR REMARK 3 S11: 0.1540 S12: -0.1443 S13: -0.3981 REMARK 3 S21: 0.2038 S22: -0.0557 S23: -0.2636 REMARK 3 S31: 0.1455 S32: 0.0418 S33: -0.1482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2201 -47.9257 69.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.0969 REMARK 3 T33: 0.1012 T12: 0.0112 REMARK 3 T13: 0.0109 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.5732 L22: 2.4835 REMARK 3 L33: 1.2181 L12: 1.5598 REMARK 3 L13: 0.3143 L23: -0.2798 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0043 S13: -0.1168 REMARK 3 S21: 0.0668 S22: -0.0461 S23: -0.1154 REMARK 3 S31: 0.0329 S32: 0.1107 S33: 0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6270 -36.0484 61.8771 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1216 REMARK 3 T33: 0.0921 T12: -0.0057 REMARK 3 T13: -0.0016 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.4000 L22: 1.5200 REMARK 3 L33: 0.6798 L12: 0.6307 REMARK 3 L13: 0.0735 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0942 S13: 0.0437 REMARK 3 S21: -0.0426 S22: -0.0123 S23: -0.0420 REMARK 3 S31: -0.0469 S32: 0.0784 S33: 0.0505 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7434 -29.7808 54.8628 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1606 REMARK 3 T33: 0.1269 T12: -0.0112 REMARK 3 T13: -0.0116 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.7920 L22: 5.9756 REMARK 3 L33: 5.1737 L12: 0.4011 REMARK 3 L13: -0.1505 L23: 4.4646 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.2218 S13: 0.2193 REMARK 3 S21: -0.3504 S22: 0.0422 S23: -0.0523 REMARK 3 S31: -0.2675 S32: 0.0957 S33: 0.0420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6653 -32.7940 64.2033 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1031 REMARK 3 T33: 0.1507 T12: 0.0132 REMARK 3 T13: -0.0151 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.1931 L22: 0.7834 REMARK 3 L33: 0.9594 L12: -0.0338 REMARK 3 L13: -0.1956 L23: -0.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0166 S13: 0.2688 REMARK 3 S21: 0.0350 S22: 0.0254 S23: 0.0725 REMARK 3 S31: -0.1332 S32: -0.0852 S33: -0.0290 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3811 -41.1402 61.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.1381 REMARK 3 T33: 0.1570 T12: 0.0044 REMARK 3 T13: -0.0287 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.4365 L22: 1.5322 REMARK 3 L33: 3.2291 L12: -0.2131 REMARK 3 L13: 1.4657 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.0533 S13: 0.0152 REMARK 3 S21: -0.0802 S22: 0.0219 S23: 0.1525 REMARK 3 S31: -0.0352 S32: -0.2716 S33: -0.0220 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6508 -41.1118 80.6335 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1713 REMARK 3 T33: 0.1541 T12: -0.0230 REMARK 3 T13: 0.0179 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.2476 L22: 2.2000 REMARK 3 L33: 0.4735 L12: 1.9260 REMARK 3 L13: 0.7311 L23: 0.8798 REMARK 3 S TENSOR REMARK 3 S11: 0.1928 S12: -0.4513 S13: 0.2083 REMARK 3 S21: 0.2094 S22: -0.2291 S23: 0.0728 REMARK 3 S31: 0.0272 S32: 0.0171 S33: 0.0384 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3525 -49.4621 62.2846 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.0766 REMARK 3 T33: 0.1332 T12: -0.0048 REMARK 3 T13: -0.0196 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.4950 L22: 0.9706 REMARK 3 L33: 2.3910 L12: 0.1131 REMARK 3 L13: -0.2530 L23: -0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.2190 S13: -0.1234 REMARK 3 S21: -0.0937 S22: 0.0430 S23: 0.0882 REMARK 3 S31: 0.0584 S32: -0.2604 S33: -0.0749 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2D2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MES, PH 6.0, WITH 0.16 M CALCIUM REMARK 280 ACETATE, 80 MM SODIUM CAR-BONATE AND 14% V/V PEG 1000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.93000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.86000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.86000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 146.51000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 92 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 201 CO CO A 403 1.29 REMARK 500 HE2 HIS A 55 CO CO A 404 1.33 REMARK 500 O HOH A 606 O HOH A 864 2.08 REMARK 500 O THR A 311 O HOH A 501 2.11 REMARK 500 O HOH A 696 O HOH A 891 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -147.27 -141.37 REMARK 500 TRP A 69 58.51 -145.66 REMARK 500 THR A 128 -166.20 -109.48 REMARK 500 TRP A 131 -154.13 -89.58 REMARK 500 HIS A 156 -60.29 -94.14 REMARK 500 GLU A 159 -130.64 52.99 REMARK 500 TYR A 309 -153.81 -127.03 REMARK 500 ASN A 312 -10.44 87.30 REMARK 500 VAL A 351 -58.89 -120.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 966 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 970 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 971 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 7.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 404 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 113.0 REMARK 620 3 KCX A 169 OQ2 95.0 88.7 REMARK 620 4 ASP A 301 OD1 88.0 91.0 176.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 99.8 REMARK 620 3 HIS A 230 NE2 113.2 92.4 REMARK 620 4 HOH A 738 O 107.5 87.2 138.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 405 DBREF 5VEJ A 34 361 UNP Q93LD7 Q93LD7_RHIRD 33 360 SEQRES 1 A 328 GLY ASP LEU ILE ASN THR VAL ARG GLY PRO ILE PRO VAL SEQRES 2 A 328 SER GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS SEQRES 3 A 328 GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE SEQRES 4 A 328 PHE GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG SEQRES 5 A 328 GLY LEU ARG HIS ALA ARG SER ALA GLY VAL GLN THR ILE SEQRES 6 A 328 VAL ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL ARG SEQRES 7 A 328 LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE SEQRES 8 A 328 VAL ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER SEQRES 9 A 328 MET ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE PHE SEQRES 10 A 328 LEU ARG GLU ILE GLN HIS GLY ILE GLU ASP THR GLY ILE SEQRES 11 A 328 ARG ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA SEQRES 12 A 328 THR PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG SEQRES 13 A 328 ALA SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR SEQRES 14 A 328 SER ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE SEQRES 15 A 328 PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE SEQRES 16 A 328 GLY HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR SEQRES 17 A 328 GLY LEU ALA ALA ARG GLY TYR LEU VAL GLY LEU ASP ARG SEQRES 18 A 328 MET PRO TYR SER ALA ILE GLY LEU GLU GLY ASN ALA SER SEQRES 19 A 328 ALA LEU ALA LEU PHE GLY THR ARG SER TRP GLN THR ARG SEQRES 20 A 328 ALA LEU LEU ILE LYS ALA LEU ILE ASP ARG GLY TYR LYS SEQRES 21 A 328 ASP ARG ILE LEU VAL SER HIS ASP TRP LEU PHE GLY PHE SEQRES 22 A 328 SER SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG SEQRES 23 A 328 ILE ASN PRO ASP GLY MET ALA PHE VAL PRO LEU ARG VAL SEQRES 24 A 328 ILE PRO PHE LEU ARG GLU LYS GLY VAL PRO PRO GLU THR SEQRES 25 A 328 LEU ALA GLY VAL THR VAL ALA ASN PRO ALA ARG PHE LEU SEQRES 26 A 328 SER PRO THR MODRES 5VEJ KCX A 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET ACT A 401 7 HET ACT A 402 7 HET CO A 403 1 HET CO A 404 1 HET F A 405 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM CO COBALT (II) ION HETNAM F FLUORIDE ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 CO 2(CO 2+) FORMUL 6 F F 1- FORMUL 7 HOH *473(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 MET A 140 1 6 HELIX 8 AA8 SER A 142 HIS A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 SER A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 ARG A 290 1 15 HELIX 17 AB8 TYR A 292 ASP A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 SHEET 1 AA1 2 LEU A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 PRO A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O KCX A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N VAL A 170 1555 1555 1.33 LINK NE2 HIS A 55 CO CO A 404 1555 1555 2.17 LINK NE2 HIS A 57 CO CO A 404 1555 1555 2.07 LINK OQ1 KCX A 169 CO CO A 403 1555 1555 2.02 LINK OQ2 KCX A 169 CO CO A 404 1555 1555 2.10 LINK ND1 HIS A 201 CO CO A 403 1555 1555 2.12 LINK NE2 HIS A 230 CO CO A 403 1555 1555 2.05 LINK OD1 ASP A 301 CO CO A 404 1555 1555 2.13 LINK CO CO A 403 O HOH A 738 1555 1555 2.28 SITE 1 AC1 3 SER A 308 TYR A 309 HOH A 506 SITE 1 AC2 5 ARG A 41 GLY A 42 ILE A 163 ARG A 331 SITE 2 AC2 5 HOH A 813 SITE 1 AC3 6 KCX A 169 HIS A 201 HIS A 230 CO A 404 SITE 2 AC3 6 F A 405 HOH A 738 SITE 1 AC4 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC4 6 CO A 403 F A 405 SITE 1 AC5 8 HIS A 55 KCX A 169 HIS A 230 ARG A 254 SITE 2 AC5 8 ASP A 301 CO A 403 CO A 404 HOH A 738 CRYST1 109.072 109.072 62.790 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009168 0.005293 0.000000 0.00000 SCALE2 0.000000 0.010587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015926 0.00000