HEADER TRANSFERASE 05-APR-17 5VEP TITLE MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB TITLE 2 STRUCTURE 3E2F COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYSTEINE-S-CONJUGATE BETA-LYASE 2,KYNURENINE COMPND 5 AMINOTRANSFERASE 3,KYNURENINE AMINOTRANSFERASE III,KATIII,KYNURENINE- COMPND 6 -GLYOXYLATE TRANSAMINASE,KYNURENINE--OXOGLUTARATE TRANSAMINASE III; COMPND 7 EC: 2.6.1.7,4.4.1.13,2.6.1.63; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KYAT3, CCBL2, KAT3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AMINOTRANSFERASE III, MOUSE, RE-REFINEMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,Z.DAUTER,W.MINOR,R.STANFIELD,P.POREBSKI,M.JASKOLSKI, AUTHOR 2 E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP REVDAT 3 13-APR-22 5VEP 1 AUTHOR JRNL LINK REVDAT 2 14-FEB-18 5VEP 1 JRNL REVDAT 1 29-NOV-17 5VEP 0 JRNL AUTH A.WLODAWER,Z.DAUTER,P.J.POREBSKI,W.MINOR,R.STANFIELD, JRNL AUTH 2 M.JASKOLSKI,E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP JRNL TITL DETECT, CORRECT, RETRACT: HOW TO MANAGE INCORRECT STRUCTURAL JRNL TITL 2 MODELS. JRNL REF FEBS J. V. 285 444 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29113027 JRNL DOI 10.1111/FEBS.14320 REMARK 0 REMARK 0 THIS ENTRY REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL DATA REMARK 0 IN 3E2F, DETERMINED BY Q.HAN,R.ROBINSON,T.CAI,D.A.TAGLE,J.LI REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3e2f REMARK 0 AUTH Q.HAN,H.ROBINSON,T.CAI,D.A.TAGLE,J.LI REMARK 0 TITL BIOCHEMICAL AND STRUCTURAL PROPERTIES OF MOUSE KYNURENINE REMARK 0 TITL 2 AMINOTRANSFERASE III. REMARK 0 REF MOL. CELL. BIOL. V. 29 784 2009 REMARK 0 REFN ESSN 1098-5549 REMARK 0 PMID 19029248 REMARK 0 DOI 10.1128/MCB.01272-08 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 27593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.982 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.469 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5VEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227309. REMARK 200 REMARK 200 SEE THE ORIGINAL DATA, ENTRY 3E2F REMARK 280 REMARK 280 SEE THE ORIGINAL DATA, ENTRY 3E2F REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.82450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.91000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.23675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.91000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.41225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 175.23675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.91000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.41225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.82450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.82450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 285 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU B 385 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 116.82 -33.68 REMARK 500 VAL A 133 89.35 -67.59 REMARK 500 THR A 256 126.03 -27.91 REMARK 500 SER A 310 -58.02 -127.40 REMARK 500 TYR A 312 -50.54 78.67 REMARK 500 ALA A 383 92.50 -51.85 REMARK 500 SER A 390 146.81 169.76 REMARK 500 ALA B 62 87.02 -58.16 REMARK 500 SER B 65 64.31 66.72 REMARK 500 SER B 310 -64.45 -123.96 REMARK 500 TYR B 312 -94.48 66.58 REMARK 500 ARG B 332 47.67 -141.51 REMARK 500 PRO B 336 -8.65 -56.32 REMARK 500 SER B 380 57.43 -91.63 REMARK 500 ALA B 383 41.13 -100.62 REMARK 500 SER B 390 134.33 57.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 391 GLU B 392 146.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 GLU A 47 OE2 47.5 REMARK 620 3 HOH A 602 O 73.4 64.8 REMARK 620 4 HOH A 612 O 57.9 97.1 64.4 REMARK 620 5 HOH A 671 O 139.4 160.1 131.9 100.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 122 OE1 REMARK 620 2 GLN A 122 OE1 0.0 REMARK 620 3 HOH A 645 O 79.1 79.1 REMARK 620 4 HOH A 645 O 105.6 105.6 143.6 REMARK 620 5 HOH A 659 O 120.9 120.9 93.4 113.0 REMARK 620 6 HOH A 672 O 162.9 162.9 84.0 86.8 61.9 REMARK 620 7 HOH A 672 O 162.4 162.4 83.5 87.2 62.0 0.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 240 O REMARK 620 2 HOH A 622 O 80.7 REMARK 620 3 HOH A 664 O 76.2 53.9 REMARK 620 4 HOH A 665 O 130.1 57.7 57.9 REMARK 620 5 HOH A 668 O 120.3 147.0 149.6 109.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 240 O REMARK 620 2 HOH B 639 O 89.1 REMARK 620 3 HOH B 647 O 102.0 76.6 REMARK 620 4 HOH B 668 O 83.2 82.9 158.7 REMARK 620 5 HOH B 673 O 81.6 129.4 57.4 143.7 REMARK 620 6 HOH B 687 O 94.8 158.7 122.6 76.8 71.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E2F RELATED DB: PDB REMARK 900 3E2F IS AN ORIGINAL DATA. THE CURRENT ENTRY IS AN ALTERNATIVE REMARK 900 MODELING OF 3E2F. IN PARTICULAR, THE HEPES MOLECULE WAS LOCATED IN REMARK 900 THE ACTIVE SITE OF THE ENZYME AND SEVERAL CALCIUM IONS IDENTIFIED DBREF 5VEP A 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 DBREF 5VEP B 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 SEQRES 1 A 410 ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL TRP SEQRES 2 A 410 VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL VAL SEQRES 3 A 410 ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SER SEQRES 4 A 410 TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE ASP SEQRES 5 A 410 ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO ALA SEQRES 6 A 410 LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE TYR SEQRES 7 A 410 GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL ALA SEQRES 8 A 410 VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN GLY SEQRES 9 A 410 LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL PRO SEQRES 10 A 410 PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA GLY SEQRES 11 A 410 ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO THR SEQRES 12 A 410 ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE ASP SEQRES 13 A 410 PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR LYS SEQRES 14 A 410 ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY LYS SEQRES 15 A 410 VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP LEU SEQRES 16 A 410 CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU VAL SEQRES 17 A 410 TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL LYS SEQRES 18 A 410 ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE THR SEQRES 19 A 410 ILE GLY SER ALA GLY LLP THR PHE SER VAL THR GLY TRP SEQRES 20 A 410 LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE LYS SEQRES 21 A 410 HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR CYS SEQRES 22 A 410 ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE TRP SEQRES 23 A 410 ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR PHE SEQRES 24 A 410 ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP ARG SEQRES 25 A 410 MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO ILE SEQRES 26 A 410 VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SER SEQRES 27 A 410 SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP GLU SEQRES 28 A 410 PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS HIS SEQRES 29 A 410 LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS ASP SEQRES 30 A 410 SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG PHE SEQRES 31 A 410 CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA GLU SEQRES 32 A 410 GLU ILE PHE ARG ALA TRP ASN SEQRES 1 B 410 ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL TRP SEQRES 2 B 410 VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL VAL SEQRES 3 B 410 ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SER SEQRES 4 B 410 TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE ASP SEQRES 5 B 410 ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO ALA SEQRES 6 B 410 LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE TYR SEQRES 7 B 410 GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL ALA SEQRES 8 B 410 VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN GLY SEQRES 9 B 410 LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL PRO SEQRES 10 B 410 PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA GLY SEQRES 11 B 410 ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO THR SEQRES 12 B 410 ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE ASP SEQRES 13 B 410 PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR LYS SEQRES 14 B 410 ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY LYS SEQRES 15 B 410 VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP LEU SEQRES 16 B 410 CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU VAL SEQRES 17 B 410 TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL LYS SEQRES 18 B 410 ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE THR SEQRES 19 B 410 ILE GLY SER ALA GLY LLP THR PHE SER VAL THR GLY TRP SEQRES 20 B 410 LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE LYS SEQRES 21 B 410 HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR CYS SEQRES 22 B 410 ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE TRP SEQRES 23 B 410 ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR PHE SEQRES 24 B 410 ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP ARG SEQRES 25 B 410 MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO ILE SEQRES 26 B 410 VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SER SEQRES 27 B 410 SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP GLU SEQRES 28 B 410 PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS HIS SEQRES 29 B 410 LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS ASP SEQRES 30 B 410 SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG PHE SEQRES 31 B 410 CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA GLU SEQRES 32 B 410 GLU ILE PHE ARG ALA TRP ASN MODRES 5VEP LLP A 281 LYS MODIFIED RESIDUE MODRES 5VEP LLP B 281 LYS MODIFIED RESIDUE HET LLP A 281 24 HET LLP B 281 24 HET EPE A 501 15 HET PEG A 502 7 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET CA A 507 1 HET CA A 508 1 HET CA A 509 1 HET EPE B 501 15 HET PEG B 502 7 HET GOL B 503 6 HET GOL B 504 6 HET CA B 505 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EPE 2(C8 H18 N2 O4 S) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 9 CA 4(CA 2+) FORMUL 17 HOH *162(H2 O) HELIX 1 AA1 ALA A 43 GLU A 47 5 5 HELIX 2 AA2 ASN A 52 ALA A 61 1 10 HELIX 3 AA3 PRO A 79 PHE A 91 1 13 HELIX 4 AA4 ILE A 92 GLN A 97 5 6 HELIX 5 AA5 HIS A 104 GLN A 120 1 17 HELIX 6 AA6 VAL A 133 VAL A 147 1 15 HELIX 7 AA7 CYS A 162 ALA A 170 1 9 HELIX 8 AA8 THR A 190 SER A 192 5 3 HELIX 9 AA9 ASP A 197 PHE A 205 1 9 HELIX 10 AB1 THR A 226 ASP A 241 1 16 HELIX 11 AB2 LYS A 262 LEU A 266 5 5 HELIX 12 AB3 MET A 269 GLU A 271 5 3 HELIX 13 AB4 ALA A 279 SER A 284 1 6 HELIX 14 AB5 VAL A 285 LYS A 289 5 5 HELIX 15 AB6 PRO A 296 ASN A 309 1 14 HELIX 16 AB7 ALA A 315 LYS A 331 1 17 HELIX 17 AB8 CYS A 338 SER A 360 1 23 HELIX 18 AB9 PRO A 393 LYS A 407 1 15 HELIX 19 AC1 SER A 414 CYS A 417 5 4 HELIX 20 AC2 SER A 421 PHE A 425 5 5 HELIX 21 AC3 LYS A 436 ALA A 449 1 14 HELIX 22 AC4 ALA B 43 GLU B 47 5 5 HELIX 23 AC5 VAL B 53 ALA B 61 1 9 HELIX 24 AC6 PRO B 79 PHE B 91 1 13 HELIX 25 AC7 ILE B 92 GLN B 97 5 6 HELIX 26 AC8 HIS B 104 GLN B 120 1 17 HELIX 27 AC9 GLY B 134 VAL B 147 1 14 HELIX 28 AD1 CYS B 162 ALA B 170 1 9 HELIX 29 AD2 THR B 190 SER B 192 5 3 HELIX 30 AD3 ASP B 197 LYS B 204 1 8 HELIX 31 AD4 THR B 226 ASP B 241 1 16 HELIX 32 AD5 LYS B 262 LEU B 266 5 5 HELIX 33 AD6 MET B 269 GLU B 271 5 3 HELIX 34 AD7 ALA B 279 PHE B 283 1 5 HELIX 35 AD8 VAL B 285 TRP B 288 5 4 HELIX 36 AD9 PRO B 296 ASN B 309 1 14 HELIX 37 AE1 ALA B 315 LYS B 331 1 17 HELIX 38 AE2 CYS B 338 SER B 360 1 23 HELIX 39 AE3 PRO B 393 LYS B 407 1 15 HELIX 40 AE4 SER B 414 CYS B 417 5 4 HELIX 41 AE5 SER B 421 PHE B 425 5 5 HELIX 42 AE6 LYS B 436 ALA B 449 1 14 SHEET 1 AA1 2 VAL A 67 ASN A 68 0 SHEET 2 AA1 2 LEU A 408 THR A 409 1 O THR A 409 N VAL A 67 SHEET 1 AA2 7 ILE A 129 ALA A 132 0 SHEET 2 AA2 7 GLY A 291 ILE A 294 -1 O GLY A 291 N ALA A 132 SHEET 3 AA2 7 THR A 273 SER A 278 -1 N THR A 275 O ILE A 294 SHEET 4 AA2 7 LEU A 243 ASP A 247 1 N SER A 246 O ILE A 274 SHEET 5 AA2 7 THR A 209 ASN A 215 1 N LEU A 214 O ASP A 247 SHEET 6 AA2 7 GLU A 152 VAL A 157 1 N GLU A 152 O LYS A 210 SHEET 7 AA2 7 VAL A 173 PRO A 178 1 O VAL A 175 N VAL A 153 SHEET 1 AA3 2 ARG A 180 SER A 181 0 SHEET 2 AA3 2 TRP A 194 THR A 195 -1 O THR A 195 N ARG A 180 SHEET 1 AA4 4 LYS A 364 ILE A 366 0 SHEET 2 AA4 4 PHE A 373 ASP A 377 -1 O ILE A 375 N ILE A 366 SHEET 3 AA4 4 LEU A 428 CYS A 432 -1 O PHE A 431 N ILE A 374 SHEET 4 AA4 4 ILE A 411 PRO A 412 -1 N ILE A 411 O ARG A 430 SHEET 1 AA5 2 VAL B 67 ASN B 68 0 SHEET 2 AA5 2 LEU B 408 THR B 409 1 O THR B 409 N VAL B 67 SHEET 1 AA6 7 ILE B 129 VAL B 133 0 SHEET 2 AA6 7 LEU B 290 ILE B 294 -1 O GLY B 291 N ALA B 132 SHEET 3 AA6 7 THR B 273 SER B 278 -1 N THR B 275 O ILE B 294 SHEET 4 AA6 7 LEU B 243 ASP B 247 1 N SER B 246 O ILE B 274 SHEET 5 AA6 7 THR B 209 ASN B 215 1 N LYS B 210 O LEU B 243 SHEET 6 AA6 7 GLU B 152 VAL B 157 1 N ILE B 154 O ILE B 213 SHEET 7 AA6 7 VAL B 173 PRO B 178 1 O VAL B 175 N ILE B 155 SHEET 1 AA7 2 ARG B 180 SER B 181 0 SHEET 2 AA7 2 TRP B 194 THR B 195 -1 O THR B 195 N ARG B 180 SHEET 1 AA8 4 LYS B 364 ILE B 366 0 SHEET 2 AA8 4 PHE B 373 ASP B 377 -1 O ILE B 375 N ILE B 366 SHEET 3 AA8 4 LEU B 428 CYS B 432 -1 O PHE B 431 N ILE B 374 SHEET 4 AA8 4 ILE B 411 PRO B 412 -1 N ILE B 411 O ARG B 430 LINK C GLY A 280 N LLP A 281 1555 1555 1.34 LINK C LLP A 281 N THR A 282 1555 1555 1.34 LINK C GLY B 280 N LLP B 281 1555 1555 1.33 LINK C LLP B 281 N THR B 282 1555 1555 1.33 LINK OE1 GLU A 47 CA CA A 509 1555 1555 2.92 LINK OE2 GLU A 47 CA CA A 509 1555 1555 2.36 LINK OE1 GLN A 122 CA CA A 507 1555 1555 2.27 LINK OE1 GLN A 122 CA CA A 507 1555 8555 2.83 LINK O HIS A 240 CA CA A 508 1555 1555 2.35 LINK CA CA A 507 O HOH A 645 1555 1555 2.30 LINK CA CA A 507 O HOH A 645 1555 8555 2.15 LINK CA CA A 507 O HOH A 659 1555 8555 3.05 LINK CA CA A 507 O HOH A 672 1555 1555 2.33 LINK CA CA A 507 O HOH A 672 1555 8555 2.33 LINK CA CA A 508 O HOH A 622 1555 1555 3.00 LINK CA CA A 508 O HOH A 664 1555 1555 2.93 LINK CA CA A 508 O HOH A 665 1555 1555 1.86 LINK CA CA A 508 O HOH A 668 1555 1555 2.99 LINK CA CA A 509 O HOH A 602 1555 6555 2.38 LINK CA CA A 509 O HOH A 612 1555 6555 2.74 LINK CA CA A 509 O HOH A 671 1555 1555 3.14 LINK O HIS B 240 CA CA B 505 1555 1555 2.40 LINK CA CA B 505 O HOH B 639 1555 1555 2.15 LINK CA CA B 505 O HOH B 647 1555 1555 2.80 LINK CA CA B 505 O HOH B 668 1555 1555 2.54 LINK CA CA B 505 O HOH B 673 1555 1555 2.38 LINK CA CA B 505 O HOH B 687 1555 1555 2.40 CISPEP 1 VAL A 157 PRO A 158 0 -0.05 CISPEP 2 THR A 216 PRO A 217 0 -4.49 CISPEP 3 ASN A 219 PRO A 220 0 13.38 CISPEP 4 VAL B 157 PRO B 158 0 -12.48 CISPEP 5 THR B 216 PRO B 217 0 -4.02 CISPEP 6 ASN B 219 PRO B 220 0 6.64 SITE 1 AC1 9 TRP A 54 GLY A 72 TYR A 136 TYR A 160 SITE 2 AC1 9 ASP A 161 ASN A 219 ARG A 430 TYR B 312 SITE 3 AC1 9 HOH B 640 SITE 1 AC2 4 LEU A 179 HIS A 424 ARG B 199 HOH B 611 SITE 1 AC3 10 ARG A 180 SER A 181 LYS A 182 PHE A 196 SITE 2 AC3 10 ASP A 197 ARG B 180 SER B 181 LYS B 182 SITE 3 AC3 10 THR B 195 ASP B 197 SITE 1 AC4 4 GLN A 231 ASP A 235 VAL A 238 PRO A 267 SITE 1 AC5 5 ASP A 241 LEU A 243 GLU A 271 HIS A 298 SITE 2 AC5 5 LEU A 299 SITE 1 AC6 5 LYS A 182 THR A 195 THR A 226 GLN A 228 SITE 2 AC6 5 GLU A 229 SITE 1 AC7 4 GLN A 122 HOH A 645 HOH A 659 HOH A 672 SITE 1 AC8 6 HIS A 240 ASP A 241 HOH A 622 HOH A 664 SITE 2 AC8 6 HOH A 665 HOH A 668 SITE 1 AC9 5 ASN A 42 GLU A 47 ASP A 437 HOH A 602 SITE 2 AC9 5 HOH A 612 SITE 1 AD1 13 GLN A 308 TYR A 312 ASN B 52 TRP B 54 SITE 2 AD1 13 GLN B 71 GLY B 72 TYR B 136 TYR B 160 SITE 3 AD1 13 ASP B 161 ASN B 219 ARG B 430 HOH B 603 SITE 4 AD1 13 HOH B 663 SITE 1 AD2 4 ASP A 197 ARG A 199 LEU B 179 HIS B 424 SITE 1 AD3 3 GLN B 231 ASP B 235 PRO B 267 SITE 1 AD4 3 GLU B 251 TRP B 252 HOH B 604 SITE 1 AD5 6 HIS B 240 HOH B 639 HOH B 647 HOH B 668 SITE 2 AD5 6 HOH B 673 HOH B 687 CRYST1 91.820 91.820 233.649 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004280 0.00000