HEADER TRANSFERASE 05-APR-17 5VER TITLE MOUSE KYNURENINE AMINOTRANSFERASE III, RE-REFINEMENT OF THE PDB TITLE 2 STRUCTURE 3E2Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYSTEINE-S-CONJUGATE BETA-LYASE 2,KYNURENINE COMPND 5 AMINOTRANSFERASE 3,KYNURENINE AMINOTRANSFERASE III,KATIII,KYNURENINE- COMPND 6 -GLYOXYLATE TRANSAMINASE,KYNURENINE--OXOGLUTARATE TRANSAMINASE III; COMPND 7 EC: 2.6.1.7,4.4.1.13,2.6.1.63; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KYAT3, CCBL2, KAT3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AMINOTRANSFERASE III, MOUSE, RE-REFINEMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,Z.DAUTER,W.MINOR,R.STANFIELD,P.POREBSKI,M.JASKOLSKI, AUTHOR 2 E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP REVDAT 3 13-APR-22 5VER 1 AUTHOR JRNL LINK REVDAT 2 14-FEB-18 5VER 1 JRNL REVDAT 1 29-NOV-17 5VER 0 JRNL AUTH A.WLODAWER,Z.DAUTER,P.J.POREBSKI,W.MINOR,R.STANFIELD, JRNL AUTH 2 M.JASKOLSKI,E.POZHARSKI,C.X.WEICHENBERGER,B.RUPP JRNL TITL DETECT, CORRECT, RETRACT: HOW TO MANAGE INCORRECT STRUCTURAL JRNL TITL 2 MODELS. JRNL REF FEBS J. V. 285 444 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29113027 JRNL DOI 10.1111/FEBS.14320 REMARK 0 REMARK 0 THIS ENTRY REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL DATA REMARK 0 IN 3E2Z, DETERMINED BY ZHANG, R., HATZOS, C., CLANCY, S., REMARK 0 JOACHIMIAK, A. REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3E2Z REMARK 0 AUTH Q.HAN,H.ROBINSON,T.CAI,D.A.TAGLE,J.LI REMARK 0 TITL BIOCHEMICAL AND STRUCTURAL PROPERTIES OF MOUSE KYNURENINE REMARK 0 TITL 2 AMINOTRANSFERASE III. REMARK 0 REF MOL. CELL. BIOL. V. 29 784 2009 REMARK 0 REFN ESSN 1098-5549 REMARK 0 PMID 19029248 REMARK 0 DOI 10.1128/MCB.01272-08 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 22779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1227 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.396 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.552 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227311. REMARK 200 REMARK 200 SEE THE ORIGINAL DATA, ENTRY 3E2Z REMARK 280 REMARK 280 SEE THE ORIGINAL DATA, ENTRY 3E2Z REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.75050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.12575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.37525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 175.12575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.37525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.75050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.75050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 855 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 60 -74.81 -74.05 REMARK 500 ALA A 62 -74.12 -51.98 REMARK 500 ASP A 63 116.87 -33.88 REMARK 500 ASP A 93 -67.65 -19.41 REMARK 500 VAL A 133 95.88 -63.42 REMARK 500 SER A 203 1.70 -65.71 REMARK 500 GLU A 251 -36.36 -38.48 REMARK 500 SER A 310 -72.99 -121.63 REMARK 500 TYR A 312 -91.22 68.03 REMARK 500 SER A 380 48.59 -90.69 REMARK 500 LEU A 381 -8.79 -140.82 REMARK 500 ASP A 384 12.32 -69.98 REMARK 500 SER A 386 -24.79 138.83 REMARK 500 THR B 58 31.59 -76.02 REMARK 500 LYS B 59 -147.27 -79.06 REMARK 500 LEU B 60 53.70 -69.14 REMARK 500 ALA B 62 -71.02 -42.09 REMARK 500 ASP B 63 119.67 -37.31 REMARK 500 THR B 195 -169.11 -171.08 REMARK 500 ASP B 241 71.22 60.37 REMARK 500 THR B 256 127.15 -24.99 REMARK 500 ARG B 272 13.73 -142.70 REMARK 500 LYS B 289 65.94 36.18 REMARK 500 SER B 310 -80.27 -131.63 REMARK 500 TYR B 312 -82.35 61.15 REMARK 500 CYS B 338 123.39 -34.68 REMARK 500 ALA B 383 96.39 60.31 REMARK 500 SER B 386 -0.24 -149.48 REMARK 500 ASN B 389 -5.53 78.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 387 MET A 388 139.37 REMARK 500 PHE B 57 THR B 58 149.23 REMARK 500 ASP B 391 GLU B 392 146.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 708 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 47 OE1 REMARK 620 2 GLU A 47 OE2 43.7 REMARK 620 3 ASP A 437 OD2 89.9 64.7 REMARK 620 4 HOH A 801 O 79.3 60.3 109.3 REMARK 620 5 HOH A 846 O 152.2 137.6 74.9 127.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 122 OE1 REMARK 620 2 GLN A 122 OE1 0.0 REMARK 620 3 HOH A 824 O 112.7 112.7 REMARK 620 4 HOH A 825 O 113.3 113.3 100.9 REMARK 620 5 HOH A 825 O 90.5 90.5 92.7 144.6 REMARK 620 6 HOH A 855 O 165.6 165.6 64.8 80.8 75.8 REMARK 620 7 HOH A 855 O 163.7 163.7 65.0 82.6 73.8 1.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 707 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 240 O REMARK 620 2 HOH A 803 O 87.2 REMARK 620 3 HOH A 812 O 161.9 95.4 REMARK 620 4 HOH A 820 O 90.3 71.2 73.7 REMARK 620 5 HOH A 833 O 94.4 137.0 71.5 65.7 REMARK 620 6 HOH A 853 O 105.7 53.5 90.1 120.6 158.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 240 O REMARK 620 2 HOH B 608 O 91.7 REMARK 620 3 HOH B 631 O 82.2 107.9 REMARK 620 4 HOH B 638 O 107.8 85.2 163.7 REMARK 620 5 HOH B 640 O 100.1 62.3 48.9 137.6 REMARK 620 6 HOH B 641 O 156.8 76.5 82.5 91.3 56.7 REMARK 620 7 HOH B 645 O 113.5 154.7 75.1 88.9 108.7 79.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E2Z RELATED DB: PDB REMARK 900 3E2Z IS AN ORIGINAL DATA. THE CURRENT ENTRY IS AN ALTERNATIVE REMARK 900 MODELING OF 3E2Z. IN PARTICULAR, THE HEPES MOLECULE WAS LOCATED IN REMARK 900 THE ACTIVE SITE OF THE ENZYME INSTEAD OF KYNURENINE AND SEVERAL REMARK 900 CALCIUM IONS WERE IDENTIFIED DBREF 5VER A 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 DBREF 5VER B 42 451 UNP Q71RI9 KAT3_MOUSE 7 416 SEQRES 1 A 410 ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL TRP SEQRES 2 A 410 VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL VAL SEQRES 3 A 410 ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SER SEQRES 4 A 410 TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE ASP SEQRES 5 A 410 ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO ALA SEQRES 6 A 410 LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE TYR SEQRES 7 A 410 GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL ALA SEQRES 8 A 410 VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN GLY SEQRES 9 A 410 LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL PRO SEQRES 10 A 410 PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA GLY SEQRES 11 A 410 ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO THR SEQRES 12 A 410 ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE ASP SEQRES 13 A 410 PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR LYS SEQRES 14 A 410 ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY LYS SEQRES 15 A 410 VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP LEU SEQRES 16 A 410 CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU VAL SEQRES 17 A 410 TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL LYS SEQRES 18 A 410 ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE THR SEQRES 19 A 410 ILE GLY SER ALA GLY LYS THR PHE SER VAL THR GLY TRP SEQRES 20 A 410 LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE LYS SEQRES 21 A 410 HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR CYS SEQRES 22 A 410 ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE TRP SEQRES 23 A 410 ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR PHE SEQRES 24 A 410 ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP ARG SEQRES 25 A 410 MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO ILE SEQRES 26 A 410 VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SER SEQRES 27 A 410 SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP GLU SEQRES 28 A 410 PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS HIS SEQRES 29 A 410 LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS ASP SEQRES 30 A 410 SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG PHE SEQRES 31 A 410 CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA GLU SEQRES 32 A 410 GLU ILE PHE ARG ALA TRP ASN SEQRES 1 B 410 ASN ALA LYS ARG ILE GLU GLY LEU ASP SER ASN VAL TRP SEQRES 2 B 410 VAL GLU PHE THR LYS LEU ALA ALA ASP PRO SER VAL VAL SEQRES 3 B 410 ASN LEU GLY GLN GLY PHE PRO ASP ILE SER PRO PRO SER SEQRES 4 B 410 TYR VAL LYS GLU GLU LEU SER LYS ALA ALA PHE ILE ASP SEQRES 5 B 410 ASN MET ASN GLN TYR THR ARG GLY PHE GLY HIS PRO ALA SEQRES 6 B 410 LEU VAL LYS ALA LEU SER CYS LEU TYR GLY LYS ILE TYR SEQRES 7 B 410 GLN ARG GLN ILE ASP PRO ASN GLU GLU ILE LEU VAL ALA SEQRES 8 B 410 VAL GLY ALA TYR GLY SER LEU PHE ASN SER ILE GLN GLY SEQRES 9 B 410 LEU VAL ASP PRO GLY ASP GLU VAL ILE ILE MET VAL PRO SEQRES 10 B 410 PHE TYR ASP CYS TYR GLU PRO MET VAL ARG MET ALA GLY SEQRES 11 B 410 ALA VAL PRO VAL PHE ILE PRO LEU ARG SER LYS PRO THR SEQRES 12 B 410 ASP GLY MET LYS TRP THR SER SER ASP TRP THR PHE ASP SEQRES 13 B 410 PRO ARG GLU LEU GLU SER LYS PHE SER SER LYS THR LYS SEQRES 14 B 410 ALA ILE ILE LEU ASN THR PRO HIS ASN PRO LEU GLY LYS SEQRES 15 B 410 VAL TYR THR ARG GLN GLU LEU GLN VAL ILE ALA ASP LEU SEQRES 16 B 410 CYS VAL LYS HIS ASP THR LEU CYS ILE SER ASP GLU VAL SEQRES 17 B 410 TYR GLU TRP LEU VAL TYR THR GLY HIS THR HIS VAL LYS SEQRES 18 B 410 ILE ALA THR LEU PRO GLY MET TRP GLU ARG THR ILE THR SEQRES 19 B 410 ILE GLY SER ALA GLY LYS THR PHE SER VAL THR GLY TRP SEQRES 20 B 410 LYS LEU GLY TRP SER ILE GLY PRO ALA HIS LEU ILE LYS SEQRES 21 B 410 HIS LEU GLN THR VAL GLN GLN ASN SER PHE TYR THR CYS SEQRES 22 B 410 ALA THR PRO LEU GLN ALA ALA LEU ALA GLU ALA PHE TRP SEQRES 23 B 410 ILE ASP ILE LYS ARG MET ASP ASP PRO GLU CYS TYR PHE SEQRES 24 B 410 ASN SER LEU PRO LYS GLU LEU GLU VAL LYS ARG ASP ARG SEQRES 25 B 410 MET VAL ARG LEU LEU ASN SER VAL GLY LEU LYS PRO ILE SEQRES 26 B 410 VAL PRO ASP GLY GLY TYR PHE ILE ILE ALA ASP VAL SER SEQRES 27 B 410 SER LEU GLY ALA ASP LEU SER ASP MET ASN SER ASP GLU SEQRES 28 B 410 PRO TYR ASP TYR LYS PHE VAL LYS TRP MET THR LYS HIS SEQRES 29 B 410 LYS LYS LEU THR ALA ILE PRO VAL SER ALA PHE CYS ASP SEQRES 30 B 410 SER LYS SER LYS PRO HIS PHE GLU LYS LEU VAL ARG PHE SEQRES 31 B 410 CYS PHE ILE LYS LYS ASP SER THR LEU ASP ALA ALA GLU SEQRES 32 B 410 GLU ILE PHE ARG ALA TRP ASN HET PLP A 701 15 HET EPE A 702 15 HET PGE A 703 10 HET GOL A 704 6 HET GOL A 705 6 HET CA A 706 1 HET CA A 707 1 HET CA A 708 1 HET PMP B 501 16 HET EPE B 502 15 HET PEG B 503 7 HET GOL B 504 6 HET GOL B 505 6 HET CA B 506 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 5 PGE C6 H14 O4 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 8 CA 4(CA 2+) FORMUL 11 PMP C8 H13 N2 O5 P FORMUL 13 PEG C4 H10 O3 FORMUL 17 HOH *101(H2 O) HELIX 1 AA1 ALA A 43 GLU A 47 5 5 HELIX 2 AA2 ASN A 52 PHE A 57 1 6 HELIX 3 AA3 PHE A 57 ALA A 62 1 6 HELIX 4 AA4 PRO A 79 PHE A 91 1 13 HELIX 5 AA5 ILE A 92 GLN A 97 5 6 HELIX 6 AA6 HIS A 104 GLN A 120 1 17 HELIX 7 AA7 VAL A 133 VAL A 147 1 15 HELIX 8 AA8 CYS A 162 ALA A 170 1 9 HELIX 9 AA9 THR A 190 SER A 192 5 3 HELIX 10 AB1 ASP A 197 SER A 203 1 7 HELIX 11 AB2 THR A 226 ASP A 241 1 16 HELIX 12 AB3 LYS A 262 LEU A 266 5 5 HELIX 13 AB4 MET A 269 GLU A 271 5 3 HELIX 14 AB5 ALA A 279 SER A 284 1 6 HELIX 15 AB6 VAL A 285 LYS A 289 5 5 HELIX 16 AB7 PRO A 296 ASN A 309 1 14 HELIX 17 AB8 ALA A 315 LYS A 331 1 17 HELIX 18 AB9 CYS A 338 VAL A 361 1 24 HELIX 19 AC1 PRO A 393 LYS A 407 1 15 HELIX 20 AC2 SER A 414 CYS A 417 5 4 HELIX 21 AC3 ASP A 418 PHE A 425 5 8 HELIX 22 AC4 LYS A 436 ALA A 449 1 14 HELIX 23 AC5 ALA B 43 GLU B 47 5 5 HELIX 24 AC6 ASN B 52 PHE B 57 1 6 HELIX 25 AC7 PRO B 79 ILE B 92 1 14 HELIX 26 AC8 ASP B 93 GLN B 97 5 5 HELIX 27 AC9 HIS B 104 TYR B 119 1 16 HELIX 28 AD1 VAL B 133 VAL B 147 1 15 HELIX 29 AD2 CYS B 162 ALA B 170 1 9 HELIX 30 AD3 THR B 190 SER B 192 5 3 HELIX 31 AD4 ASP B 197 SER B 203 1 7 HELIX 32 AD5 THR B 226 ASP B 241 1 16 HELIX 33 AD6 LYS B 262 LEU B 266 5 5 HELIX 34 AD7 MET B 269 GLU B 271 5 3 HELIX 35 AD8 ALA B 279 PHE B 283 1 5 HELIX 36 AD9 VAL B 285 LYS B 289 5 5 HELIX 37 AE1 PRO B 296 ASN B 309 1 14 HELIX 38 AE2 ALA B 315 LYS B 331 1 17 HELIX 39 AE3 CYS B 338 SER B 360 1 23 HELIX 40 AE4 PRO B 393 LYS B 407 1 15 HELIX 41 AE5 SER B 414 CYS B 417 5 4 HELIX 42 AE6 ASP B 418 PHE B 425 5 8 HELIX 43 AE7 LYS B 436 ALA B 449 1 14 SHEET 1 AA1 2 VAL A 67 ASN A 68 0 SHEET 2 AA1 2 LEU A 408 THR A 409 1 O THR A 409 N VAL A 67 SHEET 1 AA2 7 ILE A 129 ALA A 132 0 SHEET 2 AA2 7 GLY A 291 ILE A 294 -1 O GLY A 291 N ALA A 132 SHEET 3 AA2 7 THR A 273 SER A 278 -1 N THR A 275 O ILE A 294 SHEET 4 AA2 7 LEU A 243 ASP A 247 1 N SER A 246 O ILE A 274 SHEET 5 AA2 7 THR A 209 ASN A 215 1 N LEU A 214 O ASP A 247 SHEET 6 AA2 7 GLU A 152 VAL A 157 1 N ILE A 154 O ALA A 211 SHEET 7 AA2 7 VAL A 173 PRO A 178 1 O VAL A 175 N VAL A 153 SHEET 1 AA3 2 ARG A 180 SER A 181 0 SHEET 2 AA3 2 TRP A 194 THR A 195 -1 O THR A 195 N ARG A 180 SHEET 1 AA4 4 LYS A 364 ILE A 366 0 SHEET 2 AA4 4 PHE A 373 ASP A 377 -1 O ILE A 375 N ILE A 366 SHEET 3 AA4 4 LEU A 428 CYS A 432 -1 O VAL A 429 N ALA A 376 SHEET 4 AA4 4 ILE A 411 PRO A 412 -1 N ILE A 411 O ARG A 430 SHEET 1 AA5 2 VAL B 67 ASN B 68 0 SHEET 2 AA5 2 LEU B 408 THR B 409 1 O THR B 409 N VAL B 67 SHEET 1 AA6 7 ILE B 129 ALA B 132 0 SHEET 2 AA6 7 GLY B 291 ILE B 294 -1 O GLY B 291 N ALA B 132 SHEET 3 AA6 7 THR B 273 SER B 278 -1 N GLY B 277 O TRP B 292 SHEET 4 AA6 7 LEU B 243 ASP B 247 1 N SER B 246 O ILE B 274 SHEET 5 AA6 7 THR B 209 ASN B 215 1 N LEU B 214 O ASP B 247 SHEET 6 AA6 7 GLU B 152 VAL B 157 1 N ILE B 154 O ILE B 213 SHEET 7 AA6 7 VAL B 173 PRO B 178 1 O VAL B 175 N VAL B 153 SHEET 1 AA7 2 ARG B 180 SER B 181 0 SHEET 2 AA7 2 TRP B 194 THR B 195 -1 O THR B 195 N ARG B 180 SHEET 1 AA8 4 LYS B 364 ILE B 366 0 SHEET 2 AA8 4 PHE B 373 ASP B 377 -1 O ILE B 375 N ILE B 366 SHEET 3 AA8 4 LEU B 428 CYS B 432 -1 O PHE B 431 N ILE B 374 SHEET 4 AA8 4 ILE B 411 PRO B 412 -1 N ILE B 411 O ARG B 430 LINK NZ LYS A 281 C4A PLP A 701 1555 1555 1.51 LINK OE1 GLU A 47 CA CA A 708 1555 1555 3.09 LINK OE2 GLU A 47 CA CA A 708 1555 1555 2.79 LINK OE1 GLN A 122 CA CA A 706 1555 1555 2.33 LINK OE1 GLN A 122 CA CA A 706 1555 8555 2.81 LINK O HIS A 240 CA CA A 707 1555 1555 2.26 LINK OD2 ASP A 437 CA CA A 708 1555 6455 2.86 LINK CA CA A 706 O HOH A 824 1555 8555 2.54 LINK CA CA A 706 O HOH A 825 1555 1555 2.01 LINK CA CA A 706 O HOH A 825 1555 8555 2.41 LINK CA CA A 706 O HOH A 855 1555 1555 2.54 LINK CA CA A 706 O HOH A 855 1555 8555 2.55 LINK CA CA A 707 O HOH A 803 1555 1555 2.90 LINK CA CA A 707 O HOH A 812 1555 1555 2.20 LINK CA CA A 707 O HOH A 820 1555 1555 2.36 LINK CA CA A 707 O HOH A 833 1555 1555 2.84 LINK CA CA A 707 O HOH A 853 1555 1555 2.58 LINK CA CA A 708 O HOH A 801 1555 6555 2.33 LINK CA CA A 708 O HOH A 846 1555 6555 2.95 LINK O HIS B 240 CA CA B 506 1555 1555 2.18 LINK CA CA B 506 O HOH B 608 1555 1555 2.35 LINK CA CA B 506 O HOH B 631 1555 1555 2.43 LINK CA CA B 506 O HOH B 638 1555 1555 3.03 LINK CA CA B 506 O HOH B 640 1555 1555 3.08 LINK CA CA B 506 O HOH B 641 1555 1555 2.17 LINK CA CA B 506 O HOH B 645 1555 1555 2.37 CISPEP 1 VAL A 157 PRO A 158 0 1.51 CISPEP 2 THR A 216 PRO A 217 0 -14.81 CISPEP 3 ASN A 219 PRO A 220 0 14.98 CISPEP 4 VAL B 157 PRO B 158 0 -6.39 CISPEP 5 THR B 216 PRO B 217 0 1.84 CISPEP 6 ASN B 219 PRO B 220 0 17.33 SITE 1 AC1 12 GLY A 134 ALA A 135 TYR A 136 ASN A 215 SITE 2 AC1 12 ASN A 219 ASP A 247 TYR A 250 SER A 278 SITE 3 AC1 12 LYS A 281 LYS A 289 EPE A 702 TYR B 98 SITE 1 AC2 13 TRP A 54 GLN A 71 GLY A 72 TYR A 160 SITE 2 AC2 13 ASN A 219 PHE A 373 ARG A 430 PLP A 701 SITE 3 AC2 13 TYR B 98 THR B 99 GLY B 101 TYR B 312 SITE 4 AC2 13 THR B 313 SITE 1 AC3 4 LEU A 179 HIS A 424 ARG B 199 SER B 203 SITE 1 AC4 3 ILE A 118 GLU A 251 TRP A 252 SITE 1 AC5 5 THR A 226 GLN A 228 GLU A 229 LYS B 182 SITE 2 AC5 5 PRO B 183 SITE 1 AC6 4 GLN A 122 HOH A 824 HOH A 825 HOH A 855 SITE 1 AC7 6 HIS A 240 HOH A 803 HOH A 812 HOH A 820 SITE 2 AC7 6 HOH A 833 HOH A 853 SITE 1 AC8 6 ASN A 42 GLU A 47 ASP A 437 ASP A 441 SITE 2 AC8 6 HOH A 801 HOH A 846 SITE 1 AC9 13 TYR A 98 GLY B 134 ALA B 135 TYR B 136 SITE 2 AC9 13 TYR B 160 ASN B 215 ASN B 219 ASP B 247 SITE 3 AC9 13 TYR B 250 SER B 278 LYS B 281 LYS B 289 SITE 4 AC9 13 EPE B 502 SITE 1 AD1 14 TYR A 98 THR A 99 GLY A 101 TYR A 312 SITE 2 AD1 14 THR A 313 TRP B 54 GLN B 71 GLY B 72 SITE 3 AD1 14 TYR B 160 ASN B 219 PHE B 373 ARG B 430 SITE 4 AD1 14 PMP B 501 HOH B 624 SITE 1 AD2 2 ARG A 199 HIS B 424 SITE 1 AD3 4 GLN B 231 ASP B 235 VAL B 238 PRO B 267 SITE 1 AD4 4 GLU B 251 TRP B 252 HIS B 260 LYS B 262 SITE 1 AD5 7 HIS B 240 HOH B 608 HOH B 631 HOH B 638 SITE 2 AD5 7 HOH B 640 HOH B 641 HOH B 645 CRYST1 91.490 91.490 233.501 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004283 0.00000