HEADER HYDROLASE 07-APR-17 5VFH TITLE CRYSTAL STRUCTURE OF BNSP-7 FROM BOTHROPS PAULOENSIS COMPLEXED TO TITLE 2 SULFATES CAVEAT 5VFH C-N BOND DISTANCE IS OUTSIDE OF THE NORMA RANGE FOR CAVEAT 2 5VFH RESIDUES: A LYS 53 AND RESIDUE A LYS 57 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG BNSP-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,PHOSPHOLIPASE A2 II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PAULOENSIS; SOURCE 3 ORGANISM_COMMON: NEUWIED'S LANCEHEAD; SOURCE 4 ORGANISM_TAXID: 1042543 KEYWDS LYS49-PLA2, BOTHROPS PAULOENSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.DE LIMA,M.R.M.FONTES REVDAT 5 25-OCT-23 5VFH 1 REMARK REVDAT 4 15-MAR-23 5VFH 1 TITLE REMARK REVDAT 3 08-JAN-20 5VFH 1 REMARK REVDAT 2 17-APR-19 5VFH 1 REMARK REVDAT 1 27-DEC-17 5VFH 0 JRNL AUTH L.F.G.DE LIMA,R.J.BORGES,M.A.VIVIESCAS,C.A.H.FERNANDES, JRNL AUTH 2 M.R.M.FONTES JRNL TITL STRUCTURAL STUDIES WITH BNSP-7 REVEAL AN ATYPICAL OLIGOMERIC JRNL TITL 2 CONFORMATION COMPARED TO PHOSPHOLIPASES A2-LIKE TOXINS. JRNL REF BIOCHIMIE V. 142 11 2017 JRNL REFN ISSN 1638-6183 JRNL PMID 28751219 JRNL DOI 10.1016/J.BIOCHI.2017.07.009 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 40953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6038 - 3.8321 0.97 2833 145 0.1498 0.1606 REMARK 3 2 3.8321 - 3.0437 0.99 2830 146 0.1573 0.1816 REMARK 3 3 3.0437 - 2.6596 1.00 2837 145 0.1727 0.2070 REMARK 3 4 2.6596 - 2.4167 0.99 2819 145 0.1771 0.2280 REMARK 3 5 2.4167 - 2.2436 0.99 2835 146 0.1609 0.2031 REMARK 3 6 2.2436 - 2.1114 0.99 2816 144 0.1665 0.1831 REMARK 3 7 2.1114 - 2.0057 0.99 2784 143 0.1594 0.1867 REMARK 3 8 2.0057 - 1.9185 0.99 2791 144 0.1763 0.1835 REMARK 3 9 1.9185 - 1.8446 0.98 2779 142 0.1643 0.2053 REMARK 3 10 1.8446 - 1.7810 0.98 2775 143 0.1624 0.1898 REMARK 3 11 1.7810 - 1.7253 0.98 2776 142 0.1686 0.2174 REMARK 3 12 1.7253 - 1.6760 0.98 2753 141 0.1614 0.2224 REMARK 3 13 1.6760 - 1.6319 0.98 2769 143 0.1641 0.1971 REMARK 3 14 1.6319 - 1.5921 0.90 2556 131 0.1750 0.2091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1959 REMARK 3 ANGLE : 1.703 2620 REMARK 3 CHIRALITY : 0.074 267 REMARK 3 PLANARITY : 0.011 333 REMARK 3 DIHEDRAL : 12.042 732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6462 16.4499 66.7927 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.1803 REMARK 3 T33: 0.1662 T12: 0.0027 REMARK 3 T13: -0.0084 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0384 L22: 0.0492 REMARK 3 L33: 0.0795 L12: 0.0287 REMARK 3 L13: 0.0415 L23: 0.0601 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: -0.0576 S13: 0.0181 REMARK 3 S21: -0.1300 S22: 0.0553 S23: 0.1129 REMARK 3 S31: -0.0898 S32: -0.1153 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2595 5.4805 64.9508 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.2252 REMARK 3 T33: 0.2878 T12: -0.0057 REMARK 3 T13: -0.0144 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.0641 L22: 0.0836 REMARK 3 L33: 0.0452 L12: -0.0196 REMARK 3 L13: -0.0253 L23: 0.0511 REMARK 3 S TENSOR REMARK 3 S11: -0.1440 S12: 0.0716 S13: -0.0511 REMARK 3 S21: -0.0921 S22: 0.2488 S23: 0.3533 REMARK 3 S31: 0.0355 S32: -0.4073 S33: -0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0943 3.4837 74.8325 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2200 REMARK 3 T33: 0.3795 T12: -0.0220 REMARK 3 T13: 0.0172 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0455 L22: 0.0664 REMARK 3 L33: 0.0048 L12: 0.0559 REMARK 3 L13: -0.0119 L23: -0.0088 REMARK 3 S TENSOR REMARK 3 S11: 0.1182 S12: -0.1730 S13: -0.1238 REMARK 3 S21: -0.1090 S22: -0.0040 S23: 0.7486 REMARK 3 S31: 0.1095 S32: -0.1641 S33: -0.0024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4279 -2.6845 75.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.1853 REMARK 3 T33: 0.2755 T12: -0.0105 REMARK 3 T13: -0.0113 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.1672 L22: 0.0112 REMARK 3 L33: 0.2610 L12: -0.0155 REMARK 3 L13: -0.1592 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.0199 S13: -0.4616 REMARK 3 S21: 0.2501 S22: -0.0717 S23: -0.0446 REMARK 3 S31: 0.4691 S32: -0.2640 S33: -0.0142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5821 6.0581 76.4685 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.2008 REMARK 3 T33: 0.1913 T12: 0.0008 REMARK 3 T13: 0.0061 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.0199 L22: 0.0782 REMARK 3 L33: 0.1123 L12: -0.0475 REMARK 3 L13: -0.0251 L23: 0.1073 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0697 S13: -0.2073 REMARK 3 S21: 0.1423 S22: -0.0089 S23: -0.1032 REMARK 3 S31: 0.1051 S32: -0.1417 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9724 20.8328 73.0266 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.2164 REMARK 3 T33: 0.1687 T12: 0.0118 REMARK 3 T13: 0.0015 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3411 L22: 0.4710 REMARK 3 L33: 0.2593 L12: -0.0662 REMARK 3 L13: 0.2865 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.0123 S13: 0.1078 REMARK 3 S21: 0.0662 S22: 0.0135 S23: 0.0086 REMARK 3 S31: -0.2058 S32: -0.0904 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5891 24.9738 74.3207 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.1853 REMARK 3 T33: 0.1796 T12: -0.0225 REMARK 3 T13: -0.0113 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0785 L22: 0.1115 REMARK 3 L33: 0.5551 L12: -0.0830 REMARK 3 L13: 0.0023 L23: 0.1129 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.1026 S13: 0.1112 REMARK 3 S21: -0.0463 S22: 0.0868 S23: -0.1657 REMARK 3 S31: -0.3415 S32: 0.3352 S33: -0.0059 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2530 13.4750 71.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1768 REMARK 3 T33: 0.1657 T12: -0.0066 REMARK 3 T13: -0.0042 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.1884 L22: 0.1883 REMARK 3 L33: 0.2065 L12: -0.1141 REMARK 3 L13: 0.0054 L23: -0.1928 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.0832 S13: -0.0561 REMARK 3 S21: -0.0029 S22: 0.0413 S23: -0.0670 REMARK 3 S31: -0.0428 S32: 0.0707 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1856 -3.4072 67.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2337 REMARK 3 T33: 0.3117 T12: -0.0309 REMARK 3 T13: 0.0027 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.2255 L22: 0.2224 REMARK 3 L33: 0.1227 L12: 0.0822 REMARK 3 L13: -0.1301 L23: 0.0600 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.2475 S13: -0.2760 REMARK 3 S21: -0.1031 S22: 0.0091 S23: 0.0792 REMARK 3 S31: 0.2607 S32: -0.3393 S33: -0.0033 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2388 -3.0360 82.3511 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.2592 REMARK 3 T33: 0.3694 T12: -0.0397 REMARK 3 T13: -0.0668 T23: 0.0962 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.0525 REMARK 3 L33: 0.0275 L12: -0.0254 REMARK 3 L13: -0.0324 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0521 S13: -0.0739 REMARK 3 S21: 0.4234 S22: -0.1420 S23: -0.2006 REMARK 3 S31: -0.0315 S32: 0.0165 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7264 0.2121 71.2431 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1808 REMARK 3 T33: 0.1885 T12: -0.0021 REMARK 3 T13: -0.0058 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.4431 L22: 0.6502 REMARK 3 L33: 0.3842 L12: 0.2512 REMARK 3 L13: 0.0610 L23: -0.1616 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0601 S13: 0.1178 REMARK 3 S21: 0.0216 S22: 0.0182 S23: -0.1112 REMARK 3 S31: 0.0088 S32: 0.0749 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3074 -14.0993 74.2079 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.1925 REMARK 3 T33: 0.1907 T12: 0.0176 REMARK 3 T13: -0.0058 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.5490 L22: -0.0261 REMARK 3 L33: 0.2778 L12: -0.0678 REMARK 3 L13: -0.3789 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: -0.0076 S13: -0.2253 REMARK 3 S21: 0.1059 S22: 0.0109 S23: 0.0051 REMARK 3 S31: 0.4683 S32: 0.1163 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6847 2.0560 71.4889 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.1786 REMARK 3 T33: 0.1716 T12: -0.0195 REMARK 3 T13: 0.0130 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.3691 L22: 0.3422 REMARK 3 L33: 0.2316 L12: -0.2337 REMARK 3 L13: 0.1309 L23: -0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0114 S13: 0.0796 REMARK 3 S21: 0.0443 S22: 0.0034 S23: 0.0650 REMARK 3 S31: 0.0226 S32: 0.1189 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459, 1.500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V714 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V714 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.592 REMARK 200 RESOLUTION RANGE LOW (A) : 23.601 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1 REMARK 200 STARTING MODEL: 1PA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 100 MM REMARK 280 TRISHCL PH 8.5 AND 150 MM LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.78300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 78 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 79 O HOH B 301 1.27 REMARK 500 O HOH B 443 O HOH B 451 2.04 REMARK 500 O HOH A 443 O HOH A 479 2.09 REMARK 500 O HOH A 432 O HOH A 468 2.10 REMARK 500 O HOH A 380 O HOH A 468 2.12 REMARK 500 OD2 ASP B 131 O HOH B 302 2.14 REMARK 500 O GLU B 86 O HOH B 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 385 O HOH B 430 2557 2.14 REMARK 500 O HOH A 420 O HOH B 454 2557 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 53 C LYS A 57 N -0.166 REMARK 500 LYS A 78 CB LYS A 78 CG -0.242 REMARK 500 LYS A 78 CD LYS A 78 CE -0.225 REMARK 500 GLU B 12 CD GLU B 12 OE1 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 78 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 23.13 -147.62 REMARK 500 LEU A 32 -162.52 68.94 REMARK 500 ASN A 87 -126.98 49.76 REMARK 500 ALA B 24 23.02 -146.72 REMARK 500 LEU B 32 -164.35 71.01 REMARK 500 ASP B 39 -170.66 -176.39 REMARK 500 LEU B 58 56.43 -90.32 REMARK 500 ASN B 87 -158.99 -156.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 513 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 514 DISTANCE = 7.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VFJ RELATED DB: PDB REMARK 900 RELATED ID: 5VFM RELATED DB: PDB REMARK 900 RELATED ID: 5VFN RELATED DB: PDB DBREF 5VFH A 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 DBREF 5VFH B 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 SEQADV 5VFH SER A 1 UNP Q9IAT9 INSERTION SEQADV 5VFH LEU A 2 UNP Q9IAT9 SER 1 CONFLICT SEQADV 5VFH SER B 1 UNP Q9IAT9 INSERTION SEQADV 5VFH LEU B 2 UNP Q9IAT9 SER 1 CONFLICT SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP PRO CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP PRO CYS HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *429(H2 O) HELIX 1 AA1 SER A 1 GLY A 15 1 14 HELIX 2 AA2 ASN A 17 GLY A 23 1 7 HELIX 3 AA3 ASP A 39 LYS A 57 1 16 HELIX 4 AA4 ASN A 88 ASN A 109 1 21 HELIX 5 AA5 LEU A 110 TYR A 113 5 4 HELIX 6 AA6 ASN A 114 ARG A 118 5 5 HELIX 7 AA7 LEU A 121 CYS A 126 5 5 HELIX 8 AA8 LEU B 2 GLY B 15 1 13 HELIX 9 AA9 ASN B 17 GLY B 23 1 7 HELIX 10 AB1 ASP B 39 LYS B 57 1 16 HELIX 11 AB2 ASN B 88 ASN B 109 1 21 HELIX 12 AB3 LEU B 110 TYR B 113 5 4 HELIX 13 AB4 ASN B 114 ARG B 118 5 5 HELIX 14 AB5 LEU B 121 CYS B 126 5 5 SHEET 1 AA1 2 TYR A 75 TRP A 77 0 SHEET 2 AA1 2 ILE A 82 CYS A 84 -1 O VAL A 83 N SER A 76 SHEET 1 AA2 2 TYR B 75 LYS B 78 0 SHEET 2 AA2 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.05 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.06 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.03 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.04 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.07 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.01 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.08 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.00 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.02 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.06 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.04 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.05 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.03 SITE 1 AC1 5 GLY A 33 ARG A 34 LYS A 53 HOH A 326 SITE 2 AC1 5 HOH A 328 SITE 1 AC2 5 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 2 AC2 5 HOH A 346 SITE 1 AC3 5 LYS A 16 ASN A 17 LYS A 20 HOH A 305 SITE 2 AC3 5 HOH A 389 SITE 1 AC4 7 GLY B 33 ARG B 34 LYS B 53 HOH B 364 SITE 2 AC4 7 HOH B 391 HOH B 402 HOH B 421 SITE 1 AC5 5 LYS B 16 ASN B 17 LYS B 20 HOH B 308 SITE 2 AC5 5 HOH B 332 SITE 1 AC6 4 LYS B 16 LYS B 20 ARG B 118 HOH B 326 CRYST1 45.425 59.566 58.633 90.00 95.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022014 0.000000 0.002206 0.00000 SCALE2 0.000000 0.016788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017141 0.00000