HEADER HYDROLASE 07-APR-17 5VFJ TITLE CRYSTAL STRUCTURE OF BNSP-7 FROM BOTHROPS PAULOENSIS COMPLEXED WITH TITLE 2 CAFFEIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG BNSP-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,PHOSPHOLIPASE A2 II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PAULOENSIS; SOURCE 3 ORGANISM_COMMON: NEUWIED'S LANCEHEAD; SOURCE 4 ORGANISM_TAXID: 1042543 KEYWDS LYS49-PLA2, BOTHROPS PAULOENSIS, CAFFEIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.G.DE LIMA,M.R.M.FONTES REVDAT 6 09-OCT-24 5VFJ 1 REMARK REVDAT 5 04-OCT-23 5VFJ 1 REMARK REVDAT 4 08-JAN-20 5VFJ 1 REMARK REVDAT 3 17-APR-19 5VFJ 1 REMARK REVDAT 2 03-JAN-18 5VFJ 1 DBREF SEQADV REVDAT 1 20-DEC-17 5VFJ 0 JRNL AUTH L.F.G.DE LIMA,R.J.BORGES,M.A.VIVIESCAS,C.A.H.FERNANDES, JRNL AUTH 2 M.R.M.FONTES JRNL TITL STRUCTURAL STUDIES WITH BNSP-7 REVEAL AN ATYPICAL OLIGOMERIC JRNL TITL 2 CONFORMATION COMPARED TO PHOSPHOLIPASES A2-LIKE TOXINS. JRNL REF BIOCHIMIE V. 142 11 2017 JRNL REFN ISSN 1638-6183 JRNL PMID 28751219 JRNL DOI 10.1016/J.BIOCHI.2017.07.009 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 18125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3328 - 3.7829 0.98 2927 155 0.1830 0.2073 REMARK 3 2 3.7829 - 3.0040 0.99 2916 154 0.1988 0.2238 REMARK 3 3 3.0040 - 2.6246 0.99 2928 153 0.2147 0.2605 REMARK 3 4 2.6246 - 2.3848 1.00 2907 155 0.2247 0.2520 REMARK 3 5 2.3848 - 2.2140 0.98 2874 151 0.2351 0.3049 REMARK 3 6 2.2140 - 2.0835 0.92 2665 140 0.2571 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1957 REMARK 3 ANGLE : 0.923 2617 REMARK 3 CHIRALITY : 0.036 266 REMARK 3 PLANARITY : 0.004 335 REMARK 3 DIHEDRAL : 12.788 728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6337 16.6454 64.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.2577 REMARK 3 T33: 0.1691 T12: -0.0262 REMARK 3 T13: 0.0135 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 6.1576 L22: 6.0191 REMARK 3 L33: 1.2545 L12: 0.8239 REMARK 3 L13: 1.6643 L23: -1.7761 REMARK 3 S TENSOR REMARK 3 S11: -0.2899 S12: -0.1955 S13: 0.2698 REMARK 3 S21: -0.1713 S22: 0.3810 S23: -0.0062 REMARK 3 S31: -0.0800 S32: -0.2994 S33: -0.0407 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0712 3.1264 73.3737 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.2947 REMARK 3 T33: 0.4656 T12: -0.0103 REMARK 3 T13: 0.0006 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.8293 L22: 2.9135 REMARK 3 L33: 8.1735 L12: 2.6610 REMARK 3 L13: -0.4557 L23: -0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.7135 S13: -0.5900 REMARK 3 S21: 0.2794 S22: 0.2130 S23: 0.0320 REMARK 3 S31: -0.0449 S32: 0.0076 S33: -0.2376 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3253 14.8664 77.7251 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.3761 REMARK 3 T33: 0.2504 T12: 0.0188 REMARK 3 T13: -0.0158 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 3.8419 L22: 3.7487 REMARK 3 L33: 3.4668 L12: -1.2130 REMARK 3 L13: -2.0933 L23: 2.5863 REMARK 3 S TENSOR REMARK 3 S11: -0.0882 S12: -0.3205 S13: -0.0437 REMARK 3 S21: 0.5308 S22: -0.0576 S23: -0.0588 REMARK 3 S31: 0.1029 S32: -0.4061 S33: 0.1182 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2415 27.3669 67.6993 REMARK 3 T TENSOR REMARK 3 T11: 0.4199 T22: 0.2740 REMARK 3 T33: 0.4432 T12: -0.0462 REMARK 3 T13: 0.0006 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.8987 L22: 1.2516 REMARK 3 L33: 2.4559 L12: -0.8824 REMARK 3 L13: -2.1917 L23: 1.5729 REMARK 3 S TENSOR REMARK 3 S11: 0.1906 S12: -0.0920 S13: 0.6511 REMARK 3 S21: 0.1046 S22: 0.1536 S23: -0.1392 REMARK 3 S31: -0.8114 S32: 0.4832 S33: -0.5165 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7191 13.3147 69.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.2798 REMARK 3 T33: 0.2717 T12: -0.0174 REMARK 3 T13: -0.0049 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 2.2243 L22: 6.2832 REMARK 3 L33: 1.9177 L12: -0.6512 REMARK 3 L13: -0.4930 L23: 2.3174 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.1233 S13: -0.0688 REMARK 3 S21: 0.1073 S22: -0.0678 S23: -0.0505 REMARK 3 S31: 0.0764 S32: -0.3048 S33: -0.0387 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5367 -0.5046 70.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.4372 REMARK 3 T33: 0.5247 T12: -0.0526 REMARK 3 T13: 0.0249 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.8555 L22: 3.7472 REMARK 3 L33: 5.4742 L12: 0.6445 REMARK 3 L13: -2.0901 L23: -1.6670 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.1046 S13: -0.2410 REMARK 3 S21: -0.1717 S22: -0.5063 S23: -0.1867 REMARK 3 S31: 0.4756 S32: -0.7111 S33: 0.5754 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4166 0.2778 81.8563 REMARK 3 T TENSOR REMARK 3 T11: 0.4931 T22: 0.4168 REMARK 3 T33: 0.6542 T12: -0.0808 REMARK 3 T13: -0.1555 T23: 0.2340 REMARK 3 L TENSOR REMARK 3 L11: 2.8288 L22: 7.4610 REMARK 3 L33: 3.5856 L12: 1.1317 REMARK 3 L13: -1.3796 L23: 0.8019 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: -0.0154 S13: -0.6564 REMARK 3 S21: 1.2720 S22: -0.1828 S23: -0.9110 REMARK 3 S31: 0.0679 S32: 0.3953 S33: 0.3470 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3148 -2.8876 65.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2955 REMARK 3 T33: 0.1867 T12: 0.0189 REMARK 3 T13: 0.0198 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.7150 L22: 3.3357 REMARK 3 L33: 1.8893 L12: 0.7856 REMARK 3 L13: -0.8225 L23: 1.7074 REMARK 3 S TENSOR REMARK 3 S11: -0.3144 S12: 0.0788 S13: -0.3948 REMARK 3 S21: -0.1754 S22: 0.2973 S23: -0.2043 REMARK 3 S31: -0.0475 S32: 0.2867 S33: 0.0315 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7209 10.8242 73.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.2562 REMARK 3 T33: 0.3340 T12: 0.0016 REMARK 3 T13: 0.0055 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.7960 L22: 3.7849 REMARK 3 L33: 5.8275 L12: 1.1222 REMARK 3 L13: -0.2942 L23: -1.9763 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1424 S13: 0.5314 REMARK 3 S21: 0.2893 S22: 0.1172 S23: -0.1911 REMARK 3 S31: 0.1076 S32: 0.1544 S33: 0.1047 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9296 4.9450 76.2102 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.2395 REMARK 3 T33: 0.3071 T12: 0.0004 REMARK 3 T13: 0.0152 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 2.3485 L22: 4.5769 REMARK 3 L33: 4.7918 L12: 0.5814 REMARK 3 L13: -0.4624 L23: -3.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: -0.3195 S13: 0.2153 REMARK 3 S21: 0.2201 S22: 0.0039 S23: 0.3110 REMARK 3 S31: 0.0428 S32: -0.0844 S33: 0.0049 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2948 -9.8155 73.6673 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3370 REMARK 3 T33: 0.3571 T12: 0.0237 REMARK 3 T13: 0.0381 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.7980 L22: 2.0160 REMARK 3 L33: 2.3794 L12: 1.3367 REMARK 3 L13: 2.2643 L23: 1.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.1522 S12: 0.1439 S13: -0.3451 REMARK 3 S21: 0.4061 S22: 0.0003 S23: 0.0173 REMARK 3 S31: 0.5244 S32: 0.5240 S33: -0.1756 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3261 -14.2338 74.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.4956 T22: 0.3471 REMARK 3 T33: 0.4477 T12: -0.0371 REMARK 3 T13: 0.0034 T23: 0.1148 REMARK 3 L TENSOR REMARK 3 L11: 4.8299 L22: 1.7820 REMARK 3 L33: 8.3100 L12: 1.7674 REMARK 3 L13: 5.6843 L23: 3.4468 REMARK 3 S TENSOR REMARK 3 S11: 0.5452 S12: -0.5905 S13: -1.4913 REMARK 3 S21: -0.0457 S22: 0.0793 S23: -0.4975 REMARK 3 S31: 1.4138 S32: -0.1039 S33: -0.7209 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2756 0.9079 69.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2186 REMARK 3 T33: 0.2123 T12: 0.0144 REMARK 3 T13: 0.0229 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 3.1146 L22: 6.1473 REMARK 3 L33: 3.2265 L12: -0.8857 REMARK 3 L13: 1.2097 L23: -1.4060 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.0599 S13: 0.2419 REMARK 3 S21: -0.0949 S22: 0.2380 S23: 0.0957 REMARK 3 S31: 0.2150 S32: -0.1428 S33: -0.2270 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6073 14.2140 74.8488 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.3838 REMARK 3 T33: 0.4398 T12: -0.0586 REMARK 3 T13: -0.0067 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.5544 L22: 2.9107 REMARK 3 L33: 1.8445 L12: 0.0508 REMARK 3 L13: 0.8390 L23: 1.2379 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.0794 S13: 0.2058 REMARK 3 S21: 0.2406 S22: -0.1036 S23: 0.0865 REMARK 3 S31: -0.0448 S32: 0.2541 S33: 0.1555 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459, 1.500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V714 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V714 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.084 REMARK 200 RESOLUTION RANGE LOW (A) : 26.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1 REMARK 200 STARTING MODEL: 1PA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 100 MM REMARK 280 TRISHCL PH 8.5 AND 200 MM LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.53000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 375 O HOH A 382 1.84 REMARK 500 O HOH B 341 O HOH B 366 1.90 REMARK 500 O HOH B 352 O HOH B 374 1.90 REMARK 500 O THR A 13 O HOH A 301 1.96 REMARK 500 O HOH B 362 O HOH B 364 2.00 REMARK 500 OH TYR A 119 O HOH A 302 2.02 REMARK 500 O HOH B 321 O HOH B 388 2.03 REMARK 500 O HOH B 308 O HOH B 318 2.05 REMARK 500 O ARG A 118 O HOH A 303 2.06 REMARK 500 OE1 GLN B 36 O HOH B 301 2.12 REMARK 500 O HOH B 326 O HOH B 394 2.12 REMARK 500 O HOH B 304 O HOH B 382 2.15 REMARK 500 O HOH B 373 O HOH B 382 2.15 REMARK 500 O HOH A 396 O HOH B 409 2.16 REMARK 500 O HOH B 368 O HOH B 383 2.17 REMARK 500 O HOH A 388 O HOH B 408 2.17 REMARK 500 OH TYR B 119 O HOH B 302 2.18 REMARK 500 O3 SO4 A 202 O HOH A 304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 381 O HOH A 409 2657 2.04 REMARK 500 O HOH A 409 O HOH B 402 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 32 -165.62 66.23 REMARK 500 ASP A 39 -165.66 -160.40 REMARK 500 ASN A 87 -143.15 50.03 REMARK 500 ALA B 24 27.09 -145.85 REMARK 500 LEU B 32 -162.55 66.98 REMARK 500 ASP B 39 -168.79 -163.13 REMARK 500 ASN B 87 -159.34 -134.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 415 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 416 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 417 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 418 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DHC A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VFH RELATED DB: PDB REMARK 900 RELATED ID: 5VFN RELATED DB: PDB REMARK 900 RELATED ID: 5VFM RELATED DB: PDB DBREF 5VFJ A 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 DBREF 5VFJ B 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 SEQADV 5VFJ SER A 1 UNP Q9IAT9 INSERTION SEQADV 5VFJ LEU A 2 UNP Q9IAT9 SER 1 CONFLICT SEQADV 5VFJ SER B 1 UNP Q9IAT9 INSERTION SEQADV 5VFJ LEU B 2 UNP Q9IAT9 SER 1 CONFLICT SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP PRO CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP PRO CYS HET SO4 A 201 5 HET SO4 A 202 5 HET DHC A 203 13 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM SO4 SULFATE ION HETNAM DHC CAFFEIC ACID HETSYN DHC 3,4-DIHYDROXYCINNAMIC ACID FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 DHC C9 H8 O4 FORMUL 9 HOH *227(H2 O) HELIX 1 AA1 SER A 1 GLY A 15 1 14 HELIX 2 AA2 ASN A 17 GLY A 23 1 7 HELIX 3 AA3 ASP A 39 LYS A 53 1 15 HELIX 4 AA4 ASN A 88 ASN A 109 1 21 HELIX 5 AA5 LEU A 110 TYR A 113 5 4 HELIX 6 AA6 ASN A 114 ARG A 118 5 5 HELIX 7 AA7 LEU A 121 CYS A 126 5 5 HELIX 8 AA8 LEU B 2 GLY B 15 1 13 HELIX 9 AA9 ASN B 17 GLY B 23 1 7 HELIX 10 AB1 ASP B 39 LYS B 57 1 16 HELIX 11 AB2 ASN B 88 ASN B 109 1 21 HELIX 12 AB3 LEU B 110 TYR B 113 5 4 HELIX 13 AB4 ASN B 114 ARG B 118 5 5 HELIX 14 AB5 LEU B 121 CYS B 126 5 5 SHEET 1 AA1 2 TYR A 75 LYS A 78 0 SHEET 2 AA1 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SHEET 1 AA2 2 TYR B 75 TRP B 77 0 SHEET 2 AA2 2 ILE B 82 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.04 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.04 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.03 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.03 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.03 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.05 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.03 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.03 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.03 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.03 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.03 CISPEP 1 THR A 13 GLY A 15 0 -17.72 SITE 1 AC1 3 GLY A 33 ARG A 34 LYS A 53 SITE 1 AC2 5 LYS A 16 ASN A 17 LYS A 20 DHC A 203 SITE 2 AC2 5 HOH A 304 SITE 1 AC3 6 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 2 AC3 6 SO4 A 202 LYS B 20 SITE 1 AC4 4 LYS B 16 ASN B 17 LYS B 20 HOH B 303 SITE 1 AC5 4 LYS B 16 LYS B 20 LYS B 115 ARG B 118 SITE 1 AC6 4 GLY B 33 ARG B 34 LYS B 53 HOH B 357 CRYST1 45.574 59.060 58.460 90.00 95.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021942 0.000000 0.002222 0.00000 SCALE2 0.000000 0.016932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017193 0.00000