HEADER HYDROLASE 08-APR-17 5VFM TITLE CRYSTAL STRUCTURE OF BNSP-7 FROM BOTHROPS PAULOENSIS COMPLEXED WITH P- TITLE 2 COUMARIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG BNSP-7; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,PHOSPHOLIPASE A2 II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PAULOENSIS; SOURCE 3 ORGANISM_COMMON: NEUWIED'S LANCEHEAD; SOURCE 4 ORGANISM_TAXID: 1042543 KEYWDS LYS49-PLA2, BOTHROPS PAULOENSIS, P-COUMARIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.G.DE LIMA,M.R.M.FONTES REVDAT 5 04-OCT-23 5VFM 1 REMARK REVDAT 4 08-JAN-20 5VFM 1 REMARK REVDAT 3 17-APR-19 5VFM 1 REMARK REVDAT 2 03-JAN-18 5VFM 1 DBREF SEQADV REVDAT 1 20-DEC-17 5VFM 0 JRNL AUTH L.F.G.DE LIMA,R.J.BORGES,M.A.VIVIESCAS,C.A.H.FERNANDES, JRNL AUTH 2 M.R.M.FONTES JRNL TITL STRUCTURAL STUDIES WITH BNSP-7 REVEAL AN ATYPICAL OLIGOMERIC JRNL TITL 2 CONFORMATION COMPARED TO PHOSPHOLIPASES A2-LIKE TOXINS. JRNL REF BIOCHIMIE V. 142 11 2017 JRNL REFN ISSN 1638-6183 JRNL PMID 28751219 JRNL DOI 10.1016/J.BIOCHI.2017.07.009 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 18073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5473 - 4.8384 0.99 1339 149 0.1657 0.1887 REMARK 3 2 4.8384 - 3.8410 0.99 1313 146 0.1264 0.1588 REMARK 3 3 3.8410 - 3.3557 0.98 1292 144 0.1403 0.1906 REMARK 3 4 3.3557 - 3.0489 0.99 1281 142 0.1727 0.2321 REMARK 3 5 3.0489 - 2.8304 0.98 1292 144 0.1851 0.2231 REMARK 3 6 2.8304 - 2.6636 0.98 1272 140 0.1844 0.2141 REMARK 3 7 2.6636 - 2.5302 0.98 1262 140 0.1940 0.2474 REMARK 3 8 2.5302 - 2.4201 0.97 1256 141 0.1923 0.2347 REMARK 3 9 2.4201 - 2.3269 0.97 1266 141 0.1967 0.2371 REMARK 3 10 2.3269 - 2.2466 0.96 1265 139 0.1988 0.2749 REMARK 3 11 2.2466 - 2.1764 0.96 1240 139 0.2091 0.2654 REMARK 3 12 2.1764 - 2.1142 0.93 1197 133 0.2338 0.2633 REMARK 3 13 2.1142 - 2.0585 0.77 991 109 0.2399 0.3026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2008 REMARK 3 ANGLE : 1.044 2673 REMARK 3 CHIRALITY : 0.040 266 REMARK 3 PLANARITY : 0.005 335 REMARK 3 DIHEDRAL : 12.405 756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0359 9.7316 125.3312 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.2388 REMARK 3 T33: 0.3266 T12: 0.0063 REMARK 3 T13: -0.0171 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.3965 L22: 3.9901 REMARK 3 L33: 2.6069 L12: -0.2190 REMARK 3 L13: -0.1395 L23: -0.3404 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: 0.0291 S13: -0.3147 REMARK 3 S21: -0.0283 S22: 0.0118 S23: 0.3669 REMARK 3 S31: -0.0693 S32: -0.1546 S33: -0.0168 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6932 17.9583 130.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.2315 REMARK 3 T33: 0.2363 T12: -0.0027 REMARK 3 T13: -0.0187 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.8992 L22: 0.7961 REMARK 3 L33: 3.5467 L12: -0.2106 REMARK 3 L13: -1.0316 L23: 0.8866 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.2751 S13: 0.0292 REMARK 3 S21: 0.2478 S22: -0.0931 S23: 0.0079 REMARK 3 S31: -0.2953 S32: 0.0465 S33: -0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7723 7.3571 128.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.1875 T22: 0.2343 REMARK 3 T33: 0.2846 T12: -0.0055 REMARK 3 T13: -0.0307 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.9536 L22: 2.4075 REMARK 3 L33: 0.7332 L12: -0.0881 REMARK 3 L13: -0.4571 L23: 0.4300 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.0019 S13: -0.2988 REMARK 3 S21: 0.1163 S22: -0.0980 S23: -0.0352 REMARK 3 S31: 0.0017 S32: -0.0831 S33: 0.0314 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7612 -7.1714 124.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.2036 REMARK 3 T33: 0.2738 T12: 0.0500 REMARK 3 T13: 0.0333 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 4.8216 L22: 1.8025 REMARK 3 L33: 5.0272 L12: -0.2080 REMARK 3 L13: 2.5772 L23: -0.2866 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.2296 S13: -0.6224 REMARK 3 S21: 0.0015 S22: 0.3317 S23: -0.1691 REMARK 3 S31: 0.0943 S32: 0.2685 S33: -0.2778 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8674 0.7030 119.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.3142 REMARK 3 T33: 0.3965 T12: -0.0035 REMARK 3 T13: 0.0606 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 9.4936 L22: 9.3406 REMARK 3 L33: 2.9871 L12: 2.3143 REMARK 3 L13: 1.6838 L23: 5.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.0816 S13: -0.0704 REMARK 3 S21: -0.6420 S22: 0.2960 S23: -1.1651 REMARK 3 S31: 0.0391 S32: 0.4643 S33: -0.1599 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0456 9.7303 130.1344 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.2299 REMARK 3 T33: 0.4676 T12: -0.0412 REMARK 3 T13: -0.0338 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.8424 L22: 2.7573 REMARK 3 L33: 5.5360 L12: -0.7346 REMARK 3 L13: 0.6039 L23: 0.3319 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.3786 S13: 0.2546 REMARK 3 S21: 0.0730 S22: -0.2748 S23: -0.0973 REMARK 3 S31: -0.0262 S32: -0.0305 S33: 0.1301 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3923 3.8194 133.6493 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.2184 REMARK 3 T33: 0.3234 T12: -0.0110 REMARK 3 T13: -0.0148 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 2.7987 L22: 5.8887 REMARK 3 L33: 8.3427 L12: -1.0988 REMARK 3 L13: 0.2565 L23: -5.2508 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.1082 S13: 0.4650 REMARK 3 S21: 0.2504 S22: -0.0608 S23: 0.0285 REMARK 3 S31: -0.0979 S32: 0.1192 S33: 0.0562 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9115 -8.7326 137.8766 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2482 REMARK 3 T33: 0.2860 T12: 0.0087 REMARK 3 T13: -0.0372 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 7.2148 L22: 2.9026 REMARK 3 L33: 4.9429 L12: 0.7512 REMARK 3 L13: 0.7101 L23: 0.9882 REMARK 3 S TENSOR REMARK 3 S11: 0.2633 S12: -0.3353 S13: -0.6542 REMARK 3 S21: 0.1844 S22: 0.0616 S23: -0.1156 REMARK 3 S31: 0.1492 S32: 0.5363 S33: -0.2441 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4296 -14.7621 126.2797 REMARK 3 T TENSOR REMARK 3 T11: 0.4144 T22: 0.2264 REMARK 3 T33: 0.3269 T12: -0.0497 REMARK 3 T13: 0.0099 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.4156 L22: 1.9905 REMARK 3 L33: 2.7279 L12: 0.2052 REMARK 3 L13: -0.3151 L23: -2.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: 0.2457 S13: -0.4307 REMARK 3 S21: 0.3884 S22: -0.0882 S23: -0.1905 REMARK 3 S31: 1.1373 S32: -0.2404 S33: 0.0532 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2703 -5.7033 130.8076 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1949 REMARK 3 T33: 0.2506 T12: 0.0232 REMARK 3 T13: 0.0160 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.3391 L22: 4.0654 REMARK 3 L33: 8.1135 L12: -1.4761 REMARK 3 L13: 3.1220 L23: -4.1825 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.2548 S13: -0.1583 REMARK 3 S21: -0.0428 S22: 0.0479 S23: 0.1035 REMARK 3 S31: 0.1486 S32: -0.3221 S33: -0.0709 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7717 9.9669 118.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.3155 REMARK 3 T33: 0.3960 T12: 0.0233 REMARK 3 T13: 0.0308 T23: 0.1534 REMARK 3 L TENSOR REMARK 3 L11: 2.8410 L22: 3.7388 REMARK 3 L33: 5.4957 L12: 3.0628 REMARK 3 L13: 0.0638 L23: -1.4879 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 1.2131 S13: 0.6967 REMARK 3 S21: -0.6447 S22: 0.0316 S23: -0.4407 REMARK 3 S31: -0.3711 S32: 0.1300 S33: -0.0316 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0932 13.4868 131.5497 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.2442 REMARK 3 T33: 0.4982 T12: -0.0583 REMARK 3 T13: -0.0227 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.6267 L22: 3.5535 REMARK 3 L33: 0.9560 L12: 0.2782 REMARK 3 L13: 0.7419 L23: -0.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: 0.2149 S13: 0.0415 REMARK 3 S21: 0.4394 S22: -0.0749 S23: 0.1199 REMARK 3 S31: -0.0889 S32: 0.0906 S33: 0.1123 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459, 1.500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V714 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V714 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.058 REMARK 200 RESOLUTION RANGE LOW (A) : 45.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1 REMARK 200 STARTING MODEL: 1PA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 100 MM REMARK 280 TRISHCL PH 8.5 AND 150 MM LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.01950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 78 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 385 1.99 REMARK 500 O HOH A 369 O HOH A 393 2.00 REMARK 500 O HOH A 377 O HOH A 402 2.05 REMARK 500 O HOH A 366 O HOH A 413 2.12 REMARK 500 NZ LYS A 16 O4' HC4 A 207 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 408 O HOH A 398 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 24 31.71 -148.21 REMARK 500 LEU B 32 -170.56 61.94 REMARK 500 ASP B 39 -165.87 -166.38 REMARK 500 GLU B 86 -77.73 -52.66 REMARK 500 ASN B 87 -162.85 51.30 REMARK 500 TYR B 119 61.95 -112.54 REMARK 500 ALA A 24 27.84 -147.42 REMARK 500 LEU A 32 -164.33 66.99 REMARK 500 ASP A 39 -161.54 -160.99 REMARK 500 GLU A 86 -73.72 -51.98 REMARK 500 ASN A 87 172.29 58.25 REMARK 500 TYR A 119 58.57 -113.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ME2 A 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME2 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME2 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC4 A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VFH RELATED DB: PDB REMARK 900 RELATED ID: 5VFJ RELATED DB: PDB REMARK 900 RELATED ID: 5VFN RELATED DB: PDB DBREF 5VFM B 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 DBREF 5VFM A 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 SEQADV 5VFM SER B 1 UNP Q9IAT9 INSERTION SEQADV 5VFM LEU B 2 UNP Q9IAT9 SER 1 CONFLICT SEQADV 5VFM SER A 1 UNP Q9IAT9 INSERTION SEQADV 5VFM LEU A 2 UNP Q9IAT9 SER 1 CONFLICT SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP PRO CYS SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP PRO CYS HET ME2 B 201 10 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET ME2 A 201 8 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET HC4 A 207 12 HETNAM ME2 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE HETNAM SO4 SULFATE ION HETNAM HC4 4'-HYDROXYCINNAMIC ACID HETSYN HC4 PARA-COUMARIC ACID FORMUL 3 ME2 2(C7 H16 O3) FORMUL 4 SO4 9(O4 S 2-) FORMUL 14 HC4 C9 H8 O3 FORMUL 15 HOH *238(H2 O) HELIX 1 AA1 SER B 1 GLY B 15 1 14 HELIX 2 AA2 ASN B 17 GLY B 23 1 7 HELIX 3 AA3 ASP B 39 LYS B 53 1 15 HELIX 4 AA4 ASN B 88 ASN B 109 1 21 HELIX 5 AA5 LEU B 110 TYR B 113 5 4 HELIX 6 AA6 ASN B 114 ARG B 118 5 5 HELIX 7 AA7 LEU B 121 CYS B 126 5 5 HELIX 8 AA8 LEU A 2 GLY A 15 1 13 HELIX 9 AA9 ASN A 17 GLY A 23 1 7 HELIX 10 AB1 ASP A 39 LYS A 53 1 15 HELIX 11 AB2 ASN A 88 ASN A 109 1 21 HELIX 12 AB3 LEU A 110 TYR A 113 5 4 HELIX 13 AB4 ASN A 114 ARG A 118 5 5 HELIX 14 AB5 LEU A 121 CYS A 126 5 5 SHEET 1 AA1 2 TYR B 75 TRP B 77 0 SHEET 2 AA1 2 ILE B 82 CYS B 84 -1 O VAL B 83 N SER B 76 SHEET 1 AA2 2 TYR A 75 LYS A 78 0 SHEET 2 AA2 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SSBOND 1 CYS B 27 CYS B 126 1555 1555 2.06 SSBOND 2 CYS B 29 CYS B 45 1555 1555 2.04 SSBOND 3 CYS B 44 CYS B 105 1555 1555 2.06 SSBOND 4 CYS B 50 CYS B 133 1555 1555 2.04 SSBOND 5 CYS B 51 CYS B 98 1555 1555 2.06 SSBOND 6 CYS B 61 CYS B 91 1555 1555 2.06 SSBOND 7 CYS B 84 CYS B 96 1555 1555 2.05 SSBOND 8 CYS A 27 CYS A 126 1555 1555 2.05 SSBOND 9 CYS A 29 CYS A 45 1555 1555 2.05 SSBOND 10 CYS A 44 CYS A 105 1555 1555 2.06 SSBOND 11 CYS A 50 CYS A 133 1555 1555 2.04 SSBOND 12 CYS A 51 CYS A 98 1555 1555 2.06 SSBOND 13 CYS A 61 CYS A 91 1555 1555 2.03 SSBOND 14 CYS A 84 CYS A 96 1555 1555 2.04 SITE 1 AC1 4 LEU A 121 LEU B 2 GLY B 6 ALA B 19 SITE 1 AC2 5 LYS B 16 ASN B 17 LYS B 20 SO4 B 203 SITE 2 AC2 5 HOH B 305 SITE 1 AC3 5 LYS B 16 LYS B 20 LYS B 115 ARG B 118 SITE 2 AC3 5 SO4 B 202 SITE 1 AC4 4 GLY B 33 ARG B 34 LYS B 53 HOH B 309 SITE 1 AC5 6 GLU B 4 LYS B 7 ARG B 72 TYR B 73 SITE 2 AC5 6 HOH B 303 HOH B 324 SITE 1 AC6 3 LEU A 2 GLY A 6 HOH A 378 SITE 1 AC7 4 LYS A 16 ASN A 17 HC4 A 207 HOH A 304 SITE 1 AC8 2 GLY A 33 ARG A 34 SITE 1 AC9 3 PRO A 37 ARG A 43 HOH A 352 SITE 1 AD1 6 ILE A 104 ARG A 107 HOH A 313 HOH A 338 SITE 2 AD1 6 HOH A 342 HOH A 351 SITE 1 AD2 4 CYS A 51 LYS A 57 HOH A 306 HOH A 308 SITE 1 AD3 7 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 2 AD3 7 TYR A 119 SO4 A 202 LYS B 20 CRYST1 45.790 58.039 58.010 90.00 96.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021839 0.000000 0.002309 0.00000 SCALE2 0.000000 0.017230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017335 0.00000