HEADER HYDROLASE 08-APR-17 5VFN TITLE CRYSTAL STRUCTURE OF BNSP-7 FROM BOTHROPS PAULOENSIS COMPLEXED WITH TITLE 2 CINNAMIC ACID CAVEAT 5VFN SECTION 5.2 (CLOSE CONTACTS) OF THE VALIDATION REPORT CAVEAT 2 5VFN INCLUDES AT LEAST ONE PHYSICALLY UNREALISTIC INTERATOMIC CAVEAT 3 5VFN DISTANCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG BNSP-7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,PHOSPHOLIPASE A2 II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS PAULOENSIS; SOURCE 3 ORGANISM_COMMON: NEUWIED'S LANCEHEAD; SOURCE 4 ORGANISM_TAXID: 1042543 KEYWDS LYS49-PLA2, BOTHROPS PAULOENSIS, CINNAMIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.G.DE LIMA,M.R.M.FONTES REVDAT 5 23-OCT-24 5VFN 1 REMARK REVDAT 4 04-OCT-23 5VFN 1 REMARK REVDAT 3 08-JAN-20 5VFN 1 REMARK REVDAT 2 17-APR-19 5VFN 1 REMARK REVDAT 1 27-DEC-17 5VFN 0 JRNL AUTH L.F.G.DE LIMA,R.J.BORGES,M.A.VIVIESCAS,C.A.H.FERNANDES, JRNL AUTH 2 M.R.M.FONTES JRNL TITL STRUCTURAL STUDIES WITH BNSP-7 REVEAL AN ATYPICAL OLIGOMERIC JRNL TITL 2 CONFORMATION COMPARED TO PHOSPHOLIPASES A2-LIKE TOXINS. JRNL REF BIOCHIMIE V. 142 11 2017 JRNL REFN ISSN 1638-6183 JRNL PMID 28751219 JRNL DOI 10.1016/J.BIOCHI.2017.07.009 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 12086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5442 - 4.9671 1.00 1265 141 0.2136 0.2395 REMARK 3 2 4.9671 - 3.9433 1.00 1231 136 0.1756 0.2272 REMARK 3 3 3.9433 - 3.4450 1.00 1232 137 0.1789 0.2146 REMARK 3 4 3.4450 - 3.1301 1.00 1232 138 0.2270 0.2639 REMARK 3 5 3.1301 - 2.9058 0.99 1205 135 0.2314 0.3243 REMARK 3 6 2.9058 - 2.7345 0.99 1219 133 0.2440 0.2839 REMARK 3 7 2.7345 - 2.5976 0.99 1214 134 0.2562 0.2759 REMARK 3 8 2.5976 - 2.4845 0.99 1201 134 0.2814 0.3257 REMARK 3 9 2.4845 - 2.3889 0.89 1079 120 0.3167 0.3782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1961 REMARK 3 ANGLE : 1.023 2618 REMARK 3 CHIRALITY : 0.039 266 REMARK 3 PLANARITY : 0.005 334 REMARK 3 DIHEDRAL : 13.794 723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9543 7.2852 128.1041 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.3262 REMARK 3 T33: 0.3404 T12: -0.0004 REMARK 3 T13: 0.0068 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 1.7783 L22: 2.1464 REMARK 3 L33: 2.2659 L12: 0.2455 REMARK 3 L13: 0.2071 L23: 0.6326 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.2849 S13: -0.2500 REMARK 3 S21: 0.0852 S22: 0.0571 S23: -0.0010 REMARK 3 S31: -0.0291 S32: -0.0307 S33: 0.0368 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8329 21.8900 130.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.4610 T22: 0.3576 REMARK 3 T33: 0.3718 T12: -0.0865 REMARK 3 T13: 0.0135 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 2.4416 L22: 0.8840 REMARK 3 L33: 4.8608 L12: -0.6005 REMARK 3 L13: -1.4750 L23: -1.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.3866 S12: -0.2118 S13: 0.2458 REMARK 3 S21: 0.3316 S22: -0.2821 S23: -0.0467 REMARK 3 S31: -1.0362 S32: 0.0929 S33: -0.1180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9360 5.5997 128.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.2685 T22: 0.3225 REMARK 3 T33: 0.2252 T12: 0.0041 REMARK 3 T13: -0.0140 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.2337 L22: 3.0430 REMARK 3 L33: 0.4682 L12: 0.7275 REMARK 3 L13: -0.9755 L23: -0.4432 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.0659 S13: -0.1730 REMARK 3 S21: 0.2385 S22: -0.0324 S23: 0.0415 REMARK 3 S31: -0.0341 S32: -0.1621 S33: -0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8042 -2.7864 124.8271 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.2988 REMARK 3 T33: 0.3563 T12: 0.0555 REMARK 3 T13: -0.0342 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.9077 L22: 1.6739 REMARK 3 L33: 2.3785 L12: 1.1819 REMARK 3 L13: -0.0076 L23: 0.7264 REMARK 3 S TENSOR REMARK 3 S11: -0.1693 S12: 0.0722 S13: 0.1121 REMARK 3 S21: 0.0432 S22: 0.1167 S23: 0.0697 REMARK 3 S31: 0.1528 S32: 0.4026 S33: 0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4492 4.4808 133.1067 REMARK 3 T TENSOR REMARK 3 T11: 0.2625 T22: 0.3501 REMARK 3 T33: 0.4201 T12: 0.0105 REMARK 3 T13: -0.0333 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 2.1238 L22: 1.9893 REMARK 3 L33: 3.3791 L12: 1.0503 REMARK 3 L13: -0.2202 L23: -0.6390 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: 0.2147 S13: 0.6966 REMARK 3 S21: 0.3137 S22: 0.1707 S23: 0.1120 REMARK 3 S31: -0.1478 S32: 0.0470 S33: 0.0052 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8574 -13.9992 131.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.2917 REMARK 3 T33: 0.4773 T12: -0.0269 REMARK 3 T13: 0.0433 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.8656 L22: 1.3000 REMARK 3 L33: 5.6734 L12: 0.3363 REMARK 3 L13: 0.1615 L23: 0.2708 REMARK 3 S TENSOR REMARK 3 S11: 0.2084 S12: -0.1237 S13: -0.2190 REMARK 3 S21: 0.3706 S22: -0.0159 S23: -0.0073 REMARK 3 S31: 1.2632 S32: -0.1046 S33: -0.0871 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0104 2.2891 128.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.3302 REMARK 3 T33: 0.2887 T12: 0.0099 REMARK 3 T13: 0.0398 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.3088 L22: 2.1708 REMARK 3 L33: 0.3225 L12: -0.1754 REMARK 3 L13: 0.7882 L23: -0.5921 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.2993 S13: 0.3371 REMARK 3 S21: -0.0228 S22: -0.0021 S23: 0.1391 REMARK 3 S31: 0.0652 S32: 0.2448 S33: -0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3-8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459, 1.500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V714 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V714 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.389 REMARK 200 RESOLUTION RANGE LOW (A) : 45.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1 REMARK 200 STARTING MODEL: 1PA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 4000, 100 MM REMARK 280 TRISHCL PH 8.5 AND 150 MM LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.32750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 87 CG OD1 ND2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 87 CG OD1 ND2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 78 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 61 SG CYS A 91 0.53 REMARK 500 SG CYS A 44 SG CYS A 105 0.65 REMARK 500 SG CYS B 27 SG CYS B 126 0.69 REMARK 500 SG CYS A 50 SG CYS A 133 1.25 REMARK 500 SG CYS B 50 SG CYS B 133 1.51 REMARK 500 O CYS A 61 O HOH A 301 1.69 REMARK 500 O2 SO4 A 205 O HOH A 302 1.73 REMARK 500 SG CYS B 29 SG CYS B 45 1.77 REMARK 500 NZ LYS A 115 C2' HCI A 201 1.90 REMARK 500 O HOH B 327 O HOH B 339 2.01 REMARK 500 ND2 ASN B 109 O HOH B 301 2.09 REMARK 500 O HOH A 341 O HOH A 344 2.11 REMARK 500 SG CYS A 44 CB CYS A 105 2.12 REMARK 500 O HOH A 317 O HOH A 340 2.12 REMARK 500 O PRO B 68 O HOH B 302 2.18 REMARK 500 NE ARG A 34 O3 SO4 A 204 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 71 OG1 THR B 59 27510 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 44 CB - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 31.06 -143.29 REMARK 500 LEU A 32 -162.63 76.62 REMARK 500 GLU A 86 117.40 84.26 REMARK 500 ASN A 88 108.77 71.36 REMARK 500 TYR A 119 62.08 -111.07 REMARK 500 ALA B 24 30.38 -143.23 REMARK 500 ASN B 28 -26.70 -143.35 REMARK 500 LEU B 32 -163.40 80.03 REMARK 500 ASN B 88 112.03 109.00 REMARK 500 TYR B 119 62.82 -112.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ME2 A 202 REMARK 610 ME2 B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME2 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME2 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VFH RELATED DB: PDB REMARK 900 RELATED ID: 5VFJ RELATED DB: PDB REMARK 900 RELATED ID: 5VFM RELATED DB: PDB DBREF 5VFN A 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 DBREF 5VFN B 2 133 UNP Q9IAT9 PA2H_BOTPA 1 120 SEQADV 5VFN SER A 1 UNP Q9IAT9 INSERTION SEQADV 5VFN LEU A 2 UNP Q9IAT9 SER 1 CONFLICT SEQADV 5VFN SER B 1 UNP Q9IAT9 INSERTION SEQADV 5VFN LEU B 2 UNP Q9IAT9 SER 1 CONFLICT SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 A 121 ALA ASP PRO CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY GLN PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU GLY THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO PHE CYS LYS LYS SEQRES 10 B 121 ALA ASP PRO CYS HET HCI A 201 11 HET ME2 A 202 8 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET ME2 B 201 8 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HETNAM HCI HYDROCINNAMIC ACID HETNAM ME2 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE HETNAM SO4 SULFATE ION HETSYN HCI 3PP; 3-PHENYLPROPIONIC ACID FORMUL 3 HCI C9 H10 O2 FORMUL 4 ME2 2(C7 H16 O3) FORMUL 5 SO4 6(O4 S 2-) FORMUL 12 HOH *97(H2 O) HELIX 1 AA1 SER A 1 GLY A 15 1 14 HELIX 2 AA2 ASN A 17 GLY A 23 1 7 HELIX 3 AA3 ASP A 39 LYS A 53 1 15 HELIX 4 AA4 ASN A 88 ASN A 109 1 21 HELIX 5 AA5 LEU A 110 TYR A 113 5 4 HELIX 6 AA6 ASN A 114 ARG A 118 5 5 HELIX 7 AA7 LEU A 121 CYS A 126 5 5 HELIX 8 AA8 LEU B 2 GLY B 15 1 13 HELIX 9 AA9 ASN B 17 GLY B 23 1 7 HELIX 10 AB1 ASP B 39 LYS B 53 1 15 HELIX 11 AB2 ASN B 88 ASN B 109 1 21 HELIX 12 AB3 LEU B 110 TYR B 113 5 4 HELIX 13 AB4 ASN B 114 ARG B 118 5 5 HELIX 14 AB5 LEU B 121 CYS B 126 5 5 SHEET 1 AA1 2 TYR A 75 LYS A 78 0 SHEET 2 AA1 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SHEET 1 AA2 2 TYR B 75 LYS B 78 0 SHEET 2 AA2 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.02 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 3 CYS A 51 CYS A 98 1555 1555 2.04 SSBOND 4 CYS A 84 CYS A 96 1555 1555 1.94 SSBOND 5 CYS B 44 CYS B 105 1555 1555 2.04 SSBOND 6 CYS B 51 CYS B 98 1555 1555 2.04 SSBOND 7 CYS B 61 CYS B 91 1555 1555 2.03 SSBOND 8 CYS B 84 CYS B 96 1555 1555 2.03 LINK SG CYS A 61 CB CYS A 91 1555 1555 1.84 LINK SG CYS B 27 CB CYS B 126 1555 1555 1.93 CISPEP 1 THR B 59 GLY B 60 0 17.22 SITE 1 AC1 6 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 2 AC1 6 SO4 A 203 LYS B 20 SITE 1 AC2 4 LEU A 2 PHE A 3 GLY A 6 PRO A 18 SITE 1 AC3 4 LYS A 16 ASN A 17 LYS A 20 HCI A 201 SITE 1 AC4 2 ARG A 34 LYS A 53 SITE 1 AC5 3 LYS A 80 HOH A 302 HOH A 307 SITE 1 AC6 2 LEU B 2 PRO B 18 SITE 1 AC7 4 LYS B 16 ASN B 17 LYS B 20 SO4 B 203 SITE 1 AC8 4 LYS B 16 LYS B 20 ARG B 118 SO4 B 202 SITE 1 AC9 3 GLY B 33 ARG B 34 LYS B 53 CRYST1 45.775 58.655 58.128 90.00 95.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021846 0.000000 0.002241 0.00000 SCALE2 0.000000 0.017049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017294 0.00000