HEADER VIRAL PROTEIN/IMMUNE SYSTEM 11-APR-17 5VGJ TITLE CRYSTAL STRUCTURE OF THE HUMAN FAB VRC38.01, AN HIV-1 V1V2-DIRECTED TITLE 2 NEUTRALIZING ANTIBODY ISOLATED FROM DONOR N90, BOUND TO A SCAFFOLDED TITLE 3 WITO V1V2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1FD6-V1V2-WITO; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VRC38.01 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VRC38.01 FAB LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: WITO; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 GNTI-; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS FAB, HIV-1, V1V2, ENV, ANTIBODY, ENVELOPE, NEUTRALIZING, IMMUNE KEYWDS 2 SYSTEM, WITO, 1FD6, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,J.LI,P.D.KWONG REVDAT 4 04-OCT-23 5VGJ 1 HETSYN LINK REVDAT 3 29-JUL-20 5VGJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 22-NOV-17 5VGJ 1 REMARK REVDAT 1 31-MAY-17 5VGJ 0 JRNL AUTH E.M.CALE,J.GORMAN,N.A.RADAKOVICH,E.T.CROOKS,K.OSAWA,T.TONG, JRNL AUTH 2 J.LI,R.NAGARAJAN,G.OZOROWSKI,D.R.AMBROZAK,M.ASOKAN, JRNL AUTH 3 R.T.BAILER,A.K.BENNICI,X.CHEN,N.A.DORIA-ROSE,A.DRUZ,Y.FENG, JRNL AUTH 4 M.G.JOYCE,M.K.LOUDER,S.O'DELL,C.OLIVER,M.PANCERA,M.CONNORS, JRNL AUTH 5 T.J.HOPE,T.B.KEPLER,R.T.WYATT,A.B.WARD,I.S.GEORGIEV, JRNL AUTH 6 P.D.KWONG,J.R.MASCOLA,J.M.BINLEY JRNL TITL VIRUS-LIKE PARTICLES IDENTIFY AN HIV V1V2 APEX-BINDING JRNL TITL 2 NEUTRALIZING ANTIBODY THAT LACKS A PROTRUDING LOOP. JRNL REF IMMUNITY V. 46 777 2017 JRNL REFN ISSN 1097-4180 JRNL PMID 28514685 JRNL DOI 10.1016/J.IMMUNI.2017.04.011 REMARK 2 REMARK 2 RESOLUTION. 3.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2776: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 10431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6166 - 5.4821 1.00 2844 146 0.2113 0.2691 REMARK 3 2 5.4821 - 4.3534 0.98 2688 138 0.2031 0.2516 REMARK 3 3 4.3534 - 3.8037 0.94 2547 137 0.2217 0.2879 REMARK 3 4 3.8037 - 3.4562 0.68 1841 90 0.2501 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4635 REMARK 3 ANGLE : 0.632 6329 REMARK 3 CHIRALITY : 0.042 773 REMARK 3 PLANARITY : 0.003 767 REMARK 3 DIHEDRAL : 12.643 1751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10463 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.20900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5EWI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% ISOPROPANOL, 0.1M IMIDAZOLE PH 6.5 REMARK 280 AND 10% PEG8000 WERE FLASH-FROZEN IN LIQUID NITROGEN IN MOTHER REMARK 280 LIQUOR SUPPLEMENTED WITH 20% 2-METHYL-2,4-PENTANEDIAL (MPD)., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.57133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.28567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.28567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.57133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER G 140 REMARK 465 THR G 141 REMARK 465 ASN G 142 REMARK 465 GLY G 143 REMARK 465 SER G 144 REMARK 465 THR G 145 REMARK 465 ALA G 146 REMARK 465 ASN G 147 REMARK 465 VAL G 148 REMARK 465 THR G 149 REMARK 465 GLY G 185A REMARK 465 LYS G 185B REMARK 465 ASN G 185C REMARK 465 THR G 185D REMARK 465 GLN G 246 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY H 219 REMARK 465 LEU H 220 REMARK 465 GLU H 221 REMARK 465 VAL H 222 REMARK 465 LEU H 223 REMARK 465 PHE H 224 REMARK 465 GLN H 225 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP H 33 OG SER H 98 2.12 REMARK 500 C4 NAG C 1 C1 NAG C 2 2.14 REMARK 500 OD1 ASP H 61 NZ LYS H 64 2.16 REMARK 500 OE2 GLU H 27 O3 MAN B 6 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR G 135 -165.60 -75.74 REMARK 500 GLU G 152 59.84 -108.89 REMARK 500 GLU G 153 17.53 -143.53 REMARK 500 THR G 165D -149.35 64.09 REMARK 500 ARG G 166 156.10 80.40 REMARK 500 THR G 189 31.27 -140.28 REMARK 500 ASP H 144 68.31 64.28 REMARK 500 PHE H 146 133.95 -171.18 REMARK 500 THR H 160 -30.99 -132.13 REMARK 500 SER L 127 5.48 -67.56 REMARK 500 ASN L 138 74.37 52.08 REMARK 500 SER L 168 11.31 -67.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EWI RELATED DB: PDB REMARK 900 UNBOUND FAB DBREF 5VGJ G 118 246 PDB 5VGJ 5VGJ 118 246 DBREF 5VGJ H 1 225 PDB 5VGJ 5VGJ 1 225 DBREF 5VGJ L 1 214 PDB 5VGJ 5VGJ 1 214 SEQRES 1 G 134 MET THR THR PHE LYS LEU ALA ALA CYS VAL THR LEU HIS SEQRES 2 G 134 CYS THR ASN VAL THR ILE SER SER THR ASN GLY SER THR SEQRES 3 G 134 ALA ASN VAL THR MET ARG GLU GLU MET LYS ASN CYS SER SEQRES 4 G 134 PHE ASN THR THR THR VAL ILE GLY ASN SER THR GLY ARG SEQRES 5 G 134 ASP LYS ILE GLN LYS GLU TYR ALA LEU PHE TYR LYS LEU SEQRES 6 G 134 ASP ILE VAL PRO ILE GLU GLY LYS ASN THR ASN THR GLY SEQRES 7 G 134 TYR ARG LEU ILE ASN CYS GLN THR THR THR THR GLU ALA SEQRES 8 G 134 VAL ASP ALA ALA THR ALA ALA LYS VAL PHE LYS GLN TYR SEQRES 9 G 134 ALA ASN ASP ASN GLY ILE ASP GLY GLU TRP THR TYR ASP SEQRES 10 G 134 ASP ALA THR LYS THR PHE THR VAL THR GLU GLY LEU GLU SEQRES 11 G 134 VAL LEU PHE GLN SEQRES 1 H 236 GLU VAL GLN LEU VAL GLU SER GLY GLY LYS LEU VAL GLN SEQRES 2 H 236 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 H 236 GLU SER VAL GLY ASP ASN ASP MET HIS TRP VAL ARG GLN SEQRES 4 H 236 VAL ALA GLY LYS GLY LEU GLU TRP VAL SER SER ILE GLY SEQRES 5 H 236 SER SER GLY ASP THR TYR TYR ILE ASP ALA VAL LYS GLY SEQRES 6 H 236 ARG PHE THR VAL SER ARG ASP LYS GLY ARG ASN SER VAL SEQRES 7 H 236 TYR LEU GLN MET LYS THR LEU THR VAL GLY ASP THR GLY SEQRES 8 H 236 VAL TYR PHE CYS VAL ARG GLY PRO GLU SER GLY TRP PHE SEQRES 9 H 236 TYR HIS TYR TYR TRP GLY LEU GLY VAL TRP GLY ARG GLY SEQRES 10 H 236 THR THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 236 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 236 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 236 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 236 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 236 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 236 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 236 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 236 VAL GLU PRO LYS SER CYS ASP LYS GLY LEU GLU VAL LEU SEQRES 19 H 236 PHE GLN SEQRES 1 L 220 ASP LEU LEU MET THR GLN SER PRO HIS SER LEU ALA VAL SEQRES 2 L 220 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 220 GLN SER LEU LEU LEU GLY ASN GLY ARG ASN TYR LEU ASP SEQRES 4 L 220 TRP TYR VAL GLN LYS PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 220 ILE TYR LEU GLY SER ASN ARG ALA SER GLY VAL PRO ASP SEQRES 6 L 220 ARG PHE SER GLY SER GLY SER GLY THR TYR PHE THR LEU SEQRES 7 L 220 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY PHE TYR SEQRES 8 L 220 TYR CYS MET GLU ALA ARG GLN THR PRO ARG LEU THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS LEU GLU ILE ARG ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 1 26 HET NAG A 2 26 HET BMA A 3 19 HET MAN A 4 19 HET MAN A 5 21 HET MAN A 6 21 HET MAN A 7 21 HET NAG B 1 26 HET NAG B 2 26 HET BMA B 3 19 HET MAN B 4 18 HET MAN B 5 21 HET MAN B 6 21 HET MAN B 7 21 HET NAG C 1 26 HET NAG C 2 26 HET BMA C 3 19 HET MAN C 4 21 HET MAN C 5 21 HET NAG G1330 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 7(C8 H15 N O6) FORMUL 4 BMA 3(C6 H12 O6) FORMUL 4 MAN 10(C6 H12 O6) HELIX 1 AA1 ASP G 205 ASN G 220 1 16 HELIX 2 AA2 ASP H 61 LYS H 64 5 4 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 SER H 187 GLY H 190 5 4 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLU L 79 VAL L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 4 THR G 200 ALA G 203 0 SHEET 2 AA1 4 THR G 119 CYS G 126 -1 N THR G 119 O ALA G 203 SHEET 3 AA1 4 THR G 234 THR G 238 1 O VAL G 237 N ALA G 124 SHEET 4 AA1 4 GLU G 225 ASP G 229 -1 N ASP G 229 O THR G 234 SHEET 1 AA2 3 HIS G 130 THR G 132 0 SHEET 2 AA2 3 MET G 154 THR G 161 -1 O ASN G 156 N THR G 132 SHEET 3 AA2 3 GLN G 170 TYR G 177 -1 O GLN G 170 N THR G 161 SHEET 1 AA3 2 ILE G 181 ILE G 184 0 SHEET 2 AA3 2 GLY G 190 LEU G 193 -1 O ARG G 192 N VAL G 182 SHEET 1 AA4 4 GLN H 3 SER H 7 0 SHEET 2 AA4 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA4 4 SER H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA4 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA5 6 LEU H 11 VAL H 12 0 SHEET 2 AA5 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA5 6 GLY H 88 GLU H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA5 6 ASN H 32 VAL H 40 -1 N ASP H 33 O GLY H 95 SHEET 5 AA5 6 LYS H 43 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA5 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA6 4 LEU H 11 VAL H 12 0 SHEET 2 AA6 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA6 4 GLY H 88 GLU H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA6 4 VAL H 102 TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA7 4 SER H 120 LEU H 124 0 SHEET 2 AA7 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA7 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA7 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA8 4 SER H 120 LEU H 124 0 SHEET 2 AA8 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA8 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA8 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA9 3 THR H 151 TRP H 154 0 SHEET 2 AA9 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA9 3 THR H 205 VAL H 211 -1 O THR H 205 N HIS H 200 SHEET 1 AB1 4 MET L 4 SER L 7 0 SHEET 2 AB1 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB1 4 TYR L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB1 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 AB2 6 SER L 10 VAL L 13 0 SHEET 2 AB2 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB2 6 GLY L 84 GLU L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB2 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB2 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB2 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AB3 4 SER L 10 VAL L 13 0 SHEET 2 AB3 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB3 4 GLY L 84 GLU L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLU L 90 SHEET 1 AB4 4 SER L 114 PHE L 118 0 SHEET 2 AB4 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB5 4 ALA L 153 LEU L 154 0 SHEET 2 AB5 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB5 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AB5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 2 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 6 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN G 133 C1 NAG G1330 1555 1555 1.44 LINK ND2 ASN G 156 C1 NAG A 1 1555 1555 1.40 LINK ND2 ASN G 160 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN G 165B C1 NAG C 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O3 BMA A 3 C1 MAN A 7 1555 1555 1.44 LINK O3 MAN A 4 C1 MAN A 5 1555 1555 1.44 LINK O6 MAN A 4 C1 MAN A 6 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.44 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O6 MAN B 4 C1 MAN B 6 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -2.79 CISPEP 2 GLU H 148 PRO H 149 0 0.08 CISPEP 3 SER L 7 PRO L 8 0 -0.58 CISPEP 4 THR L 94 PRO L 95 0 5.99 CISPEP 5 TYR L 140 PRO L 141 0 1.01 CRYST1 106.572 106.572 129.857 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009383 0.005417 0.000000 0.00000 SCALE2 0.000000 0.010835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007701 0.00000