HEADER HYDROLASE 11-APR-17 5VGM TITLE CRYSTAL STRUCTURE OF DIHYDROOROTASE PYRC FROM VIBRIO CHOLERAE IN TITLE 2 COMPLEX WITH ZINC AT 1.95 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHOASE; COMPND 5 EC: 3.5.2.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: PYRC, BSN91_03690, EN12_18175, ERS013140_03537, SOURCE 5 ERS013198_00138, ERS013199_01662; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 "MAGIC"; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIPOWSKA,I.G.SHABALIN,C.D.MIKS,J.WINSOR,D.R.COOPER,L.SHUVALOVA, AUTHOR 2 K.KWON,K.LEWINSKI,W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 6 15-NOV-23 5VGM 1 REMARK REVDAT 5 04-OCT-23 5VGM 1 REMARK REVDAT 4 23-MAR-22 5VGM 1 LINK REVDAT 3 21-AUG-19 5VGM 1 JRNL REVDAT 2 13-SEP-17 5VGM 1 REMARK REVDAT 1 26-APR-17 5VGM 0 JRNL AUTH J.LIPOWSKA,C.D.MIKS,K.KWON,L.SHUVALOVA,H.ZHENG,K.LEWINSKI, JRNL AUTH 2 D.R.COOPER,I.G.SHABALIN,W.MINOR JRNL TITL PYRIMIDINE BIOSYNTHESIS IN PATHOGENS - STRUCTURES AND JRNL TITL 2 ANALYSIS OF DIHYDROOROTASES FROM YERSINIA PESTIS AND VIBRIO JRNL TITL 3 CHOLERAE. JRNL REF INT.J.BIOL.MACROMOL. V. 136 1176 2019 JRNL REFN ISSN 0141-8130 JRNL PMID 31207330 JRNL DOI 10.1016/J.IJBIOMAC.2019.05.149 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 39091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 5.04000 REMARK 3 B33 (A**2) : -4.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5272 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4859 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7175 ; 1.349 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11195 ; 0.971 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;35.157 ;23.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 795 ;11.708 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5870 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1052 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4 ;20.358 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 342 B 0 342 21036 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7260 15.9440 86.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.3514 T22: 0.2391 REMARK 3 T33: 0.2837 T12: -0.1254 REMARK 3 T13: 0.0168 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.4383 L22: 3.2228 REMARK 3 L33: 2.3939 L12: -0.3818 REMARK 3 L13: 0.3798 L23: 1.6187 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0624 S13: -0.1095 REMARK 3 S21: 0.1914 S22: -0.1064 S23: 0.1460 REMARK 3 S31: 0.3321 S32: -0.4837 S33: 0.0897 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6220 27.6570 95.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.2378 REMARK 3 T33: 0.2381 T12: 0.0128 REMARK 3 T13: -0.0091 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.4119 L22: 3.8493 REMARK 3 L33: 4.5633 L12: 1.5680 REMARK 3 L13: 1.3678 L23: 0.7969 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.0963 S13: 0.2049 REMARK 3 S21: 0.0389 S22: -0.1329 S23: -0.0235 REMARK 3 S31: -0.1081 S32: -0.1028 S33: 0.1043 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9150 30.2980 96.2350 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.2056 REMARK 3 T33: 0.2918 T12: 0.0053 REMARK 3 T13: -0.0504 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.8215 L22: 4.7727 REMARK 3 L33: 3.6152 L12: 0.7254 REMARK 3 L13: -1.3719 L23: 0.9680 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.2071 S13: 0.1802 REMARK 3 S21: -0.1744 S22: -0.1599 S23: -0.1715 REMARK 3 S31: -0.1991 S32: -0.0828 S33: 0.1455 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9990 30.2920 88.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.3734 T22: 0.1621 REMARK 3 T33: 0.3049 T12: 0.0057 REMARK 3 T13: -0.0540 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.7705 L22: 0.0766 REMARK 3 L33: 8.4452 L12: 0.2378 REMARK 3 L13: -0.5377 L23: -0.1379 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.1204 S13: -0.0280 REMARK 3 S21: -0.0389 S22: -0.0297 S23: -0.0343 REMARK 3 S31: -0.5974 S32: 0.3216 S33: 0.1248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8490 18.5340 77.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.0523 REMARK 3 T33: 0.2659 T12: -0.0177 REMARK 3 T13: -0.0390 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.6302 L22: 0.9006 REMARK 3 L33: 2.3811 L12: -0.0775 REMARK 3 L13: 0.4117 L23: -0.4010 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.1156 S13: -0.1198 REMARK 3 S21: 0.1343 S22: -0.0174 S23: -0.0224 REMARK 3 S31: 0.1935 S32: -0.0077 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 281 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9400 7.5390 80.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.4155 T22: 0.1394 REMARK 3 T33: 0.3555 T12: -0.1073 REMARK 3 T13: 0.0049 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.8801 L22: 1.6676 REMARK 3 L33: 2.1159 L12: 0.3233 REMARK 3 L13: 0.9436 L23: 0.5674 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.0097 S13: -0.3379 REMARK 3 S21: 0.2781 S22: -0.0700 S23: 0.0751 REMARK 3 S31: 0.4708 S32: -0.0819 S33: -0.0804 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5970 42.2610 40.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1625 REMARK 3 T33: 0.2438 T12: 0.0052 REMARK 3 T13: -0.0967 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.5890 L22: 2.2793 REMARK 3 L33: 1.3290 L12: 0.7962 REMARK 3 L13: 0.3865 L23: 0.6607 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.0328 S13: 0.0216 REMARK 3 S21: -0.1002 S22: -0.0286 S23: 0.1686 REMARK 3 S31: -0.0796 S32: -0.2480 S33: 0.0478 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 36.8840 27.2830 35.7200 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1922 REMARK 3 T33: 0.2650 T12: -0.0486 REMARK 3 T13: -0.0717 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 4.6647 L22: 6.6646 REMARK 3 L33: 3.4142 L12: -2.5602 REMARK 3 L13: -0.4229 L23: 0.5482 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0840 S13: -0.3890 REMARK 3 S21: -0.0668 S22: 0.0345 S23: -0.0249 REMARK 3 S31: 0.3892 S32: 0.0653 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1570 27.5160 40.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1200 REMARK 3 T33: 0.2741 T12: -0.0344 REMARK 3 T13: -0.0794 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 3.2505 L22: 3.8037 REMARK 3 L33: 3.5090 L12: -1.3717 REMARK 3 L13: -0.2743 L23: 0.7505 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0420 S13: -0.2738 REMARK 3 S21: -0.0201 S22: 0.0411 S23: -0.0989 REMARK 3 S31: 0.0541 S32: 0.2274 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8740 31.4570 51.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.0748 REMARK 3 T33: 0.2910 T12: 0.0273 REMARK 3 T13: -0.0761 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.5384 L22: 0.7358 REMARK 3 L33: 2.8544 L12: -0.2144 REMARK 3 L13: -0.9261 L23: 0.7872 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: -0.0717 S13: -0.1269 REMARK 3 S21: 0.0970 S22: 0.0504 S23: -0.1964 REMARK 3 S31: 0.2643 S32: 0.3163 S33: 0.0414 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 198 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2520 37.3460 58.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.0509 REMARK 3 T33: 0.2233 T12: -0.0151 REMARK 3 T13: -0.0747 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.2279 L22: 1.5199 REMARK 3 L33: 1.2642 L12: 0.2954 REMARK 3 L13: -0.5153 L23: -0.3613 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: 0.0351 S13: 0.0157 REMARK 3 S21: 0.1504 S22: -0.0589 S23: 0.0509 REMARK 3 S31: 0.0738 S32: -0.0741 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 271 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4900 50.3440 51.3290 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.0744 REMARK 3 T33: 0.2671 T12: 0.0246 REMARK 3 T13: -0.1080 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.6769 L22: 1.1189 REMARK 3 L33: 0.6953 L12: 0.2637 REMARK 3 L13: -0.3138 L23: 0.2157 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0205 S13: 0.1618 REMARK 3 S21: 0.0028 S22: -0.0048 S23: 0.0853 REMARK 3 S31: -0.0991 S32: -0.1811 S33: 0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5VGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41257 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5V0G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 14 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE, 0.5 REMARK 280 MM TCE, AND 20 MM L-CITRULINE WERE MIXED WITH 0.2 UL OF THE REMARK 280 TOP96 SCREEN CONDITION #C11 (0.2 M SODIUM ACETATE 0.1 M SODIUM REMARK 280 CACODYLATE: HCL, PH 6.5 30 % (W/V) PEG 8000), 0.1 UL OF THE REMARK 280 HAMPTON ADDITIVE SCREEN # 94 (7%V/V 1-BUTANOL) AND EQUILIBRATED REMARK 280 AGAINST 1.5 M NACL SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION REMARK 280 PLATE (SWISSCI). BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED REMARK 280 WITH 1/50 V/V OF 2 MG/ML CHYMOTRYPSIN SOLUTION AT 289 K FOR 1 REMARK 280 HOURS., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.62850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 PRO A 64 REMARK 465 GLN A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 102 REMARK 465 GLY A 103 REMARK 465 ALA A 104 REMARK 465 THR A 105 REMARK 465 THR A 106 REMARK 465 ASN A 107 REMARK 465 SER A 108 REMARK 465 ASP A 109 REMARK 465 SER A 110 REMARK 465 ALA B 104 REMARK 465 THR B 105 REMARK 465 THR B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 67 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 SER A 114 OG REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ASN A 117 CG OD1 ND2 REMARK 470 HIS A 141 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 150 CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 280 CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 GLU A 306 CD OE1 OE2 REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 ASN B 107 CG OD1 ND2 REMARK 470 ASP B 109 CG OD1 OD2 REMARK 470 SER B 110 OG REMARK 470 HIS B 141 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 LYS B 280 CD CE NZ REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 13 100.49 -165.08 REMARK 500 ARG A 17 -147.76 57.11 REMARK 500 ASN A 41 48.31 -90.70 REMARK 500 HIS A 173 69.35 29.90 REMARK 500 ALA A 269 36.10 -154.63 REMARK 500 ASP A 326 -166.07 -116.02 REMARK 500 HIS B 13 102.15 -166.10 REMARK 500 ARG B 17 -147.22 58.23 REMARK 500 ASN B 41 48.37 -90.21 REMARK 500 GLN B 63 64.82 70.78 REMARK 500 HIS B 173 69.93 29.51 REMARK 500 ALA B 269 35.32 -156.39 REMARK 500 ASP B 326 -164.30 -119.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 638 DISTANCE = 7.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 13 NE2 REMARK 620 2 HIS A 15 NE2 109.1 REMARK 620 3 KCX A 98 OQ1 86.3 90.9 REMARK 620 4 ASP A 246 OD1 84.0 87.9 169.1 REMARK 620 5 HOH A 536 O 121.5 128.5 101.3 87.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 98 OQ2 REMARK 620 2 HIS A 135 ND1 105.5 REMARK 620 3 HIS A 173 NE2 114.7 98.3 REMARK 620 4 HOH A 536 O 109.9 130.5 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 13 NE2 REMARK 620 2 HIS B 15 NE2 110.5 REMARK 620 3 KCX B 98 OQ1 87.2 91.1 REMARK 620 4 ASP B 246 OD1 83.4 88.3 169.6 REMARK 620 5 HOH B 556 O 120.2 128.1 100.9 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 98 OQ2 REMARK 620 2 HIS B 135 ND1 105.1 REMARK 620 3 HIS B 173 NE2 115.0 99.5 REMARK 620 4 HOH B 556 O 106.0 133.0 98.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP90537 RELATED DB: TARGETTRACK DBREF1 5VGM A 1 342 UNP A0A0H6AFA4_VIBCL DBREF2 5VGM A A0A0H6AFA4 1 342 DBREF1 5VGM B 1 342 UNP A0A0H6AFA4_VIBCL DBREF2 5VGM B A0A0H6AFA4 1 342 SEQADV 5VGM SER A -2 UNP A0A0H6AFA EXPRESSION TAG SEQADV 5VGM ASN A -1 UNP A0A0H6AFA EXPRESSION TAG SEQADV 5VGM ALA A 0 UNP A0A0H6AFA EXPRESSION TAG SEQADV 5VGM SER B -2 UNP A0A0H6AFA EXPRESSION TAG SEQADV 5VGM ASN B -1 UNP A0A0H6AFA EXPRESSION TAG SEQADV 5VGM ALA B 0 UNP A0A0H6AFA EXPRESSION TAG SEQRES 1 A 345 SER ASN ALA MET THR THR LEU THR ILE THR ARG PRO ASP SEQRES 2 A 345 ASP TRP HIS VAL HIS LEU ARG ASP GLY ASP VAL LEU ALA SEQRES 3 A 345 ASP THR VAL ARG ASP ILE SER ARG TYR ASN GLY ARG ALA SEQRES 4 A 345 LEU ILE MET PRO ASN THR VAL PRO PRO VAL THR THR THR SEQRES 5 A 345 GLU MET ALA LEU ALA TYR ARG GLU ARG ILE MET ALA ALA SEQRES 6 A 345 GLN PRO GLN ALA HIS PHE GLU PRO LEU MET ALA LEU TYR SEQRES 7 A 345 LEU THR ASP ASN THR SER PRO GLU GLU ILE ARG LYS ALA SEQRES 8 A 345 LYS ALA SER GLY LYS VAL VAL ALA ALA KCX LEU TYR PRO SEQRES 9 A 345 ALA GLY ALA THR THR ASN SER ASP SER GLY VAL THR SER SEQRES 10 A 345 ALA LYS ASN ILE TYR PRO VAL LEU GLN ALA MET GLN GLU SEQRES 11 A 345 VAL GLY MET LEU LEU LEU VAL HIS GLY GLU VAL THR THR SEQRES 12 A 345 HIS GLU VAL ASP ILE PHE ASP ARG GLU LYS THR PHE LEU SEQRES 13 A 345 ASP THR VAL LEU ALA PRO ILE VAL ASN ASP PHE PRO GLN SEQRES 14 A 345 LEU LYS ILE VAL LEU GLU HIS ILE THR THR ALA ASP ALA SEQRES 15 A 345 VAL THR PHE VAL GLN GLN ALA GLY ASP ASN VAL ALA ALA SEQRES 16 A 345 THR ILE THR ALA HIS HIS LEU LEU PHE ASN ARG ASN HIS SEQRES 17 A 345 MET LEU VAL GLY GLY ILE ARG PRO HIS PHE TYR CYS LEU SEQRES 18 A 345 PRO ILE LEU LYS ARG ALA THR HIS GLN HIS ALA LEU VAL SEQRES 19 A 345 ALA ALA ALA THR SER GLY SER LYS LYS PHE PHE LEU GLY SEQRES 20 A 345 THR ASP SER ALA PRO HIS ALA LYS GLY ARG LYS GLU ALA SEQRES 21 A 345 ALA CSX GLY CSX ALA GLY SER TYR THR ALA HIS ALA ALA SEQRES 22 A 345 LEU GLU LEU TYR ALA GLU VAL PHE GLU LYS GLU GLY LYS SEQRES 23 A 345 LEU GLU ASN LEU GLU ALA PHE ALA SER PHE ASN GLY PRO SEQRES 24 A 345 ASP PHE TYR GLY LEU PRO ARG ASN GLN GLU THR VAL THR SEQRES 25 A 345 LEU THR LYS GLN ALA TRP PRO VAL ALA GLU SER MET PRO SEQRES 26 A 345 PHE GLY SER ASP ILE VAL VAL PRO ILE ARG ALA GLY GLU SEQRES 27 A 345 ASN ILE GLU TRP THR VAL LYS SEQRES 1 B 345 SER ASN ALA MET THR THR LEU THR ILE THR ARG PRO ASP SEQRES 2 B 345 ASP TRP HIS VAL HIS LEU ARG ASP GLY ASP VAL LEU ALA SEQRES 3 B 345 ASP THR VAL ARG ASP ILE SER ARG TYR ASN GLY ARG ALA SEQRES 4 B 345 LEU ILE MET PRO ASN THR VAL PRO PRO VAL THR THR THR SEQRES 5 B 345 GLU MET ALA LEU ALA TYR ARG GLU ARG ILE MET ALA ALA SEQRES 6 B 345 GLN PRO GLN ALA HIS PHE GLU PRO LEU MET ALA LEU TYR SEQRES 7 B 345 LEU THR ASP ASN THR SER PRO GLU GLU ILE ARG LYS ALA SEQRES 8 B 345 LYS ALA SER GLY LYS VAL VAL ALA ALA KCX LEU TYR PRO SEQRES 9 B 345 ALA GLY ALA THR THR ASN SER ASP SER GLY VAL THR SER SEQRES 10 B 345 ALA LYS ASN ILE TYR PRO VAL LEU GLN ALA MET GLN GLU SEQRES 11 B 345 VAL GLY MET LEU LEU LEU VAL HIS GLY GLU VAL THR THR SEQRES 12 B 345 HIS GLU VAL ASP ILE PHE ASP ARG GLU LYS THR PHE LEU SEQRES 13 B 345 ASP THR VAL LEU ALA PRO ILE VAL ASN ASP PHE PRO GLN SEQRES 14 B 345 LEU LYS ILE VAL LEU GLU HIS ILE THR THR ALA ASP ALA SEQRES 15 B 345 VAL THR PHE VAL GLN GLN ALA GLY ASP ASN VAL ALA ALA SEQRES 16 B 345 THR ILE THR ALA HIS HIS LEU LEU PHE ASN ARG ASN HIS SEQRES 17 B 345 MET LEU VAL GLY GLY ILE ARG PRO HIS PHE TYR CYS LEU SEQRES 18 B 345 PRO ILE LEU LYS ARG ALA THR HIS GLN HIS ALA LEU VAL SEQRES 19 B 345 ALA ALA ALA THR SER GLY SER LYS LYS PHE PHE LEU GLY SEQRES 20 B 345 THR ASP SER ALA PRO HIS ALA LYS GLY ARG LYS GLU ALA SEQRES 21 B 345 ALA CSX GLY CSX ALA GLY SER TYR THR ALA HIS ALA ALA SEQRES 22 B 345 LEU GLU LEU TYR ALA GLU VAL PHE GLU LYS GLU GLY LYS SEQRES 23 B 345 LEU GLU ASN LEU GLU ALA PHE ALA SER PHE ASN GLY PRO SEQRES 24 B 345 ASP PHE TYR GLY LEU PRO ARG ASN GLN GLU THR VAL THR SEQRES 25 B 345 LEU THR LYS GLN ALA TRP PRO VAL ALA GLU SER MET PRO SEQRES 26 B 345 PHE GLY SER ASP ILE VAL VAL PRO ILE ARG ALA GLY GLU SEQRES 27 B 345 ASN ILE GLU TRP THR VAL LYS MODRES 5VGM KCX A 98 LYS MODIFIED RESIDUE MODRES 5VGM CSX A 259 CYS MODIFIED RESIDUE MODRES 5VGM CSX A 261 CYS MODIFIED RESIDUE MODRES 5VGM KCX B 98 LYS MODIFIED RESIDUE MODRES 5VGM CSX B 259 CYS MODIFIED RESIDUE MODRES 5VGM CSX B 261 CYS MODIFIED RESIDUE HET KCX A 98 12 HET CSX A 259 7 HET CSX A 261 7 HET KCX B 98 12 HET CSX B 259 7 HET CSX B 261 7 HET ZN A 401 1 HET ZN A 402 1 HET ACT A 403 4 HET ACT A 404 4 HET ACT A 405 4 HET ZN B 401 1 HET ZN B 402 1 HET ACT B 403 4 HET CL B 404 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CSX S-OXY CYSTEINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 1 CSX 4(C3 H7 N O3 S) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 11 CL CL 1- FORMUL 12 HOH *227(H2 O) HELIX 1 AA1 ASP A 18 ASP A 20 5 3 HELIX 2 AA2 VAL A 21 SER A 30 1 10 HELIX 3 AA3 THR A 48 ALA A 62 1 15 HELIX 4 AA4 SER A 81 SER A 91 1 11 HELIX 5 AA5 SER A 114 ASN A 117 5 4 HELIX 6 AA6 ILE A 118 GLY A 129 1 12 HELIX 7 AA7 ASP A 144 PHE A 146 5 3 HELIX 8 AA8 ASP A 147 VAL A 156 1 10 HELIX 9 AA9 VAL A 156 PHE A 164 1 9 HELIX 10 AB1 THR A 176 ALA A 186 1 11 HELIX 11 AB2 ALA A 196 PHE A 201 1 6 HELIX 12 AB3 ASN A 202 VAL A 208 1 7 HELIX 13 AB4 ARG A 212 TYR A 216 5 5 HELIX 14 AB5 ARG A 223 GLY A 237 1 15 HELIX 15 AB6 ALA A 251 GLU A 256 1 6 HELIX 16 AB7 ALA A 269 GLU A 281 1 13 HELIX 17 AB8 LYS A 283 GLU A 285 5 3 HELIX 18 AB9 ASN A 286 PHE A 293 1 8 HELIX 19 AC1 PHE A 293 GLY A 300 1 8 HELIX 20 AC2 ASP B 18 ASP B 20 5 3 HELIX 21 AC3 VAL B 21 ARG B 31 1 11 HELIX 22 AC4 THR B 48 ALA B 62 1 15 HELIX 23 AC5 SER B 81 SER B 91 1 11 HELIX 24 AC6 SER B 114 ASN B 117 5 4 HELIX 25 AC7 ILE B 118 GLY B 129 1 12 HELIX 26 AC8 ASP B 144 PHE B 146 5 3 HELIX 27 AC9 ASP B 147 VAL B 156 1 10 HELIX 28 AD1 VAL B 156 PHE B 164 1 9 HELIX 29 AD2 THR B 176 ALA B 186 1 11 HELIX 30 AD3 ALA B 196 PHE B 201 1 6 HELIX 31 AD4 ASN B 202 VAL B 208 1 7 HELIX 32 AD5 ARG B 212 TYR B 216 5 5 HELIX 33 AD6 ARG B 223 SER B 236 1 14 HELIX 34 AD7 ALA B 251 GLU B 256 1 6 HELIX 35 AD8 ALA B 269 GLU B 281 1 13 HELIX 36 AD9 LYS B 283 GLU B 285 5 3 HELIX 37 AE1 ASN B 286 PHE B 293 1 8 HELIX 38 AE2 PHE B 293 GLY B 300 1 8 SHEET 1 AA1 3 THR A 3 THR A 7 0 SHEET 2 AA1 3 THR A 307 PRO A 316 -1 O LEU A 310 N LEU A 4 SHEET 3 AA1 3 ASN A 336 LYS A 342 -1 O LYS A 342 N THR A 309 SHEET 1 AA2 8 ASP A 11 VAL A 14 0 SHEET 2 AA2 8 ARG A 35 ILE A 38 1 O LEU A 37 N ASP A 11 SHEET 3 AA2 8 GLU A 69 TYR A 75 1 O LEU A 71 N ILE A 38 SHEET 4 AA2 8 VAL A 94 LEU A 99 1 O KCX A 98 N LEU A 74 SHEET 5 AA2 8 LEU A 131 VAL A 134 1 O LEU A 133 N LEU A 99 SHEET 6 AA2 8 ILE A 169 LEU A 171 1 O VAL A 170 N LEU A 132 SHEET 7 AA2 8 VAL A 190 ILE A 194 1 O ALA A 191 N LEU A 171 SHEET 8 AA2 8 PHE A 241 LEU A 243 1 O PHE A 242 N ALA A 192 SHEET 1 AA3 2 MET A 321 PHE A 323 0 SHEET 2 AA3 2 ASP A 326 VAL A 328 -1 O ASP A 326 N PHE A 323 SHEET 1 AA4 3 THR B 3 THR B 7 0 SHEET 2 AA4 3 THR B 307 PRO B 316 -1 O LEU B 310 N LEU B 4 SHEET 3 AA4 3 ASN B 336 LYS B 342 -1 O THR B 340 N THR B 311 SHEET 1 AA5 8 ASP B 11 VAL B 14 0 SHEET 2 AA5 8 ARG B 35 ILE B 38 1 O LEU B 37 N ASP B 11 SHEET 3 AA5 8 GLU B 69 TYR B 75 1 O LEU B 71 N ILE B 38 SHEET 4 AA5 8 VAL B 94 LEU B 99 1 O KCX B 98 N LEU B 74 SHEET 5 AA5 8 LEU B 131 VAL B 134 1 O LEU B 133 N LEU B 99 SHEET 6 AA5 8 ILE B 169 LEU B 171 1 O VAL B 170 N LEU B 132 SHEET 7 AA5 8 VAL B 190 ILE B 194 1 O ALA B 191 N LEU B 171 SHEET 8 AA5 8 PHE B 241 LEU B 243 1 O PHE B 242 N ALA B 192 SHEET 1 AA6 2 MET B 321 PHE B 323 0 SHEET 2 AA6 2 ASP B 326 VAL B 328 -1 O VAL B 328 N MET B 321 LINK C ALA A 97 N KCX A 98 1555 1555 1.33 LINK C KCX A 98 N LEU A 99 1555 1555 1.33 LINK C ALA A 258 N CSX A 259 1555 1555 1.34 LINK C CSX A 259 N GLY A 260 1555 1555 1.33 LINK C GLY A 260 N CSX A 261 1555 1555 1.33 LINK C CSX A 261 N ALA A 262 1555 1555 1.33 LINK C ALA B 97 N KCX B 98 1555 1555 1.33 LINK C KCX B 98 N LEU B 99 1555 1555 1.32 LINK C ALA B 258 N CSX B 259 1555 1555 1.33 LINK C CSX B 259 N GLY B 260 1555 1555 1.33 LINK C GLY B 260 N CSX B 261 1555 1555 1.33 LINK C CSX B 261 N ALA B 262 1555 1555 1.33 LINK NE2 HIS A 13 ZN ZN A 402 1555 1555 2.15 LINK NE2 HIS A 15 ZN ZN A 402 1555 1555 2.12 LINK OQ2 KCX A 98 ZN ZN A 401 1555 1555 1.94 LINK OQ1 KCX A 98 ZN ZN A 402 1555 1555 2.06 LINK ND1 HIS A 135 ZN ZN A 401 1555 1555 2.14 LINK NE2 HIS A 173 ZN ZN A 401 1555 1555 2.13 LINK OD1 ASP A 246 ZN ZN A 402 1555 1555 2.10 LINK ZN ZN A 401 O HOH A 536 1555 1555 1.99 LINK ZN ZN A 402 O HOH A 536 1555 1555 1.99 LINK NE2 HIS B 13 ZN ZN B 402 1555 1555 2.14 LINK NE2 HIS B 15 ZN ZN B 402 1555 1555 2.14 LINK OQ2 KCX B 98 ZN ZN B 401 1555 1555 1.94 LINK OQ1 KCX B 98 ZN ZN B 402 1555 1555 2.03 LINK ND1 HIS B 135 ZN ZN B 401 1555 1555 2.12 LINK NE2 HIS B 173 ZN ZN B 401 1555 1555 2.12 LINK OD1 ASP B 246 ZN ZN B 402 1555 1555 2.09 LINK ZN ZN B 401 O HOH B 556 1555 1555 1.99 LINK ZN ZN B 402 O HOH B 556 1555 1555 2.00 CISPEP 1 VAL A 43 PRO A 44 0 -9.03 CISPEP 2 LEU A 218 PRO A 219 0 -7.57 CISPEP 3 VAL B 43 PRO B 44 0 -10.20 CISPEP 4 LEU B 218 PRO B 219 0 -6.55 SITE 1 AC1 5 KCX A 98 HIS A 135 HIS A 173 ZN A 402 SITE 2 AC1 5 HOH A 536 SITE 1 AC2 6 HIS A 13 HIS A 15 KCX A 98 ASP A 246 SITE 2 AC2 6 ZN A 401 HOH A 536 SITE 1 AC3 4 ARG A 17 ASP A 18 THR A 42 VAL A 43 SITE 1 AC4 4 ARG A 203 ARG A 223 ARG B 203 ARG B 223 SITE 1 AC5 1 ARG A 303 SITE 1 AC6 5 KCX B 98 HIS B 135 HIS B 173 ZN B 402 SITE 2 AC6 5 HOH B 556 SITE 1 AC7 6 HIS B 13 HIS B 15 KCX B 98 ASP B 246 SITE 2 AC7 6 ZN B 401 HOH B 556 SITE 1 AC8 1 HOH B 508 SITE 1 AC9 3 GLY B 282 LYS B 283 LEU B 284 CRYST1 62.507 57.257 87.524 90.00 105.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015998 0.000000 0.004313 0.00000 SCALE2 0.000000 0.017465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011833 0.00000