HEADER IMMUNE SYSTEM 11-APR-17 5VGP TITLE FC FRAGMENT OF HUMAN IGG1 ANTIBODY, FROM NIST MAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN FC FRAGMENT WITH G1F/G0F GLYCAN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HUMAN FC FRAGMENT WITH G1F/G0F GLYCAN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS HUMAN, ANTIBODY, GLYCOFORM, G1F/G0F, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.T.GALLAGHER,C.V.GALVIN,I.KARAGEORGOS,J.P.MARINO REVDAT 7 04-OCT-23 5VGP 1 HETSYN LINK REVDAT 6 29-JUL-20 5VGP 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 26-SEP-18 5VGP 1 JRNL REVDAT 4 19-SEP-18 5VGP 1 JRNL REVDAT 3 05-SEP-18 5VGP 1 REMARK REVDAT 2 11-JUL-18 5VGP 1 COMPND REVDAT 1 18-APR-18 5VGP 0 JRNL AUTH D.T.GALLAGHER,C.V.GALVIN,I.KARAGEORGOS JRNL TITL STRUCTURE OF THE FC FRAGMENT OF THE NIST REFERENCE ANTIBODY JRNL TITL 2 RM8671. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 524 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30198883 JRNL DOI 10.1107/S2053230X18009834 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 29080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 209 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 1.21000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3660 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5010 ; 1.656 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 6.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;37.301 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 584 ;16.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.929 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2648 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1670 ; 1.150 ; 2.913 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 1.795 ; 4.359 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1990 ; 1.617 ; 3.106 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5213 ; 5.631 ;40.833 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 239 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7450 -13.8360 57.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0307 REMARK 3 T33: 0.1268 T12: 0.0103 REMARK 3 T13: 0.0120 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.3928 L22: 1.0974 REMARK 3 L33: 3.9251 L12: -0.0649 REMARK 3 L13: 1.1959 L23: -0.8678 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.1687 S13: -0.0515 REMARK 3 S21: 0.1026 S22: 0.0317 S23: 0.1119 REMARK 3 S31: 0.0070 S32: 0.0565 S33: -0.0576 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 447 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7030 -6.4860 27.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.2532 REMARK 3 T33: 0.1274 T12: -0.1495 REMARK 3 T13: 0.0256 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 4.8197 L22: 2.2931 REMARK 3 L33: 2.1374 L12: 0.5865 REMARK 3 L13: -0.7151 L23: 0.2275 REMARK 3 S TENSOR REMARK 3 S11: -0.3723 S12: 0.7986 S13: -0.2835 REMARK 3 S21: -0.2843 S22: 0.4460 S23: -0.1529 REMARK 3 S31: 0.1170 S32: -0.0908 S33: -0.0738 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 239 B 344 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0540 12.0290 61.1050 REMARK 3 T TENSOR REMARK 3 T11: 1.2338 T22: 0.0496 REMARK 3 T33: 0.0942 T12: -0.0533 REMARK 3 T13: 0.0163 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 3.7074 L22: 6.6135 REMARK 3 L33: 6.4850 L12: 0.4902 REMARK 3 L13: -3.0903 L23: -1.8168 REMARK 3 S TENSOR REMARK 3 S11: 0.2853 S12: -0.1635 S13: 0.2058 REMARK 3 S21: 2.6658 S22: -0.2552 S23: 0.0736 REMARK 3 S31: -1.3184 S32: 0.0651 S33: -0.0301 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 345 B 447 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1280 7.8320 29.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.1554 REMARK 3 T33: 0.1272 T12: -0.0750 REMARK 3 T13: -0.0178 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 4.2255 L22: 2.4510 REMARK 3 L33: 2.2047 L12: 0.3926 REMARK 3 L13: 0.9088 L23: -1.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.3273 S12: 0.6338 S13: 0.2140 REMARK 3 S21: -0.1816 S22: 0.2796 S23: 0.0187 REMARK 3 S31: 0.1302 S32: -0.1054 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 609 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9040 -10.8510 56.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.4610 REMARK 3 T33: 0.1547 T12: -0.1080 REMARK 3 T13: -0.0628 T23: 0.1172 REMARK 3 L TENSOR REMARK 3 L11: 7.5744 L22: 3.0557 REMARK 3 L33: 4.7950 L12: -1.8102 REMARK 3 L13: -2.8571 L23: 1.2115 REMARK 3 S TENSOR REMARK 3 S11: -0.1604 S12: 0.8495 S13: 0.0093 REMARK 3 S21: -0.0508 S22: -0.3370 S23: -0.0440 REMARK 3 S31: -0.4249 S32: 0.7261 S33: 0.4973 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 601 B 608 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7130 5.4990 57.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.6077 T22: 0.1357 REMARK 3 T33: 0.3593 T12: 0.0655 REMARK 3 T13: 0.3687 T23: -0.0852 REMARK 3 L TENSOR REMARK 3 L11: 14.2700 L22: 13.7270 REMARK 3 L33: 9.8138 L12: 13.2753 REMARK 3 L13: -3.6092 L23: -6.8419 REMARK 3 S TENSOR REMARK 3 S11: 0.9375 S12: -0.0978 S13: 0.5597 REMARK 3 S21: 1.5830 S22: -0.0044 S23: 0.8897 REMARK 3 S31: -1.9529 S32: -0.2566 S33: -0.9331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5VGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30746 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0155 REMARK 200 STARTING MODEL: 3D0S REMARK 200 REMARK 200 REMARK: BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 8K, 40 MM CACL2 100 MM NA REMARK 280 HEPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.95600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.17600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.17600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.95600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 PRO A 231 REMARK 465 CYS A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 PRO A 448 REMARK 465 GLY A 449 REMARK 465 LYS A 450 REMARK 465 THR B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 PRO B 231 REMARK 465 CYS B 232 REMARK 465 PRO B 233 REMARK 465 ALA B 234 REMARK 465 PRO B 235 REMARK 465 GLU B 236 REMARK 465 LEU B 237 REMARK 465 LEU B 238 REMARK 465 PRO B 448 REMARK 465 GLY B 449 REMARK 465 LYS B 450 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GAL C 6 O HOH A 701 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 422 2.99 -67.96 REMARK 500 ASN A 437 18.16 55.22 REMARK 500 ALA B 290 143.01 -178.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 826 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 790 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 791 DISTANCE = 6.29 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K8A RELATED DB: PDB REMARK 900 CORRESPONDING FAB FRAGMENT DBREF 5VGP A 228 450 UNP Q6PYX1 Q6PYX1_HUMAN 126 348 DBREF 5VGP B 228 450 UNP Q6PYX1 Q6PYX1_HUMAN 126 348 SEQRES 1 A 223 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 A 223 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 A 223 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 A 223 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 A 223 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 A 223 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 A 223 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 A 223 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 A 223 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 A 223 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 A 223 ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 12 A 223 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 A 223 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 A 223 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 A 223 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 16 A 223 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 17 A 223 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 18 A 223 GLY LYS SEQRES 1 B 223 THR CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY SEQRES 2 B 223 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 3 B 223 LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 4 B 223 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 5 B 223 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 6 B 223 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 7 B 223 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 8 B 223 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 9 B 223 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 10 B 223 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 11 B 223 ARG GLU GLU MET THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 12 B 223 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 13 B 223 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 14 B 223 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 15 B 223 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 16 B 223 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 17 B 223 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO SEQRES 18 B 223 GLY LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUC C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL C6 H12 O6 FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 HOH *218(H2 O) HELIX 1 AA1 LYS A 249 MET A 255 1 7 HELIX 2 AA2 LEU A 312 ASN A 318 1 7 HELIX 3 AA3 GLU A 359 LYS A 363 5 5 HELIX 4 AA4 LYS A 417 GLN A 422 1 6 HELIX 5 AA5 LEU A 435 TYR A 439 5 5 HELIX 6 AA6 LYS B 249 MET B 255 1 7 HELIX 7 AA7 LEU B 312 ASN B 318 1 7 HELIX 8 AA8 ARG B 358 LYS B 363 5 6 HELIX 9 AA9 LYS B 417 GLN B 422 1 6 HELIX 10 AB1 LEU B 435 TYR B 439 5 5 SHEET 1 AA1 4 SER A 242 PHE A 246 0 SHEET 2 AA1 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA1 4 TYR A 303 THR A 310 -1 O SER A 307 N CYS A 264 SHEET 4 AA1 4 LYS A 291 THR A 292 -1 N LYS A 291 O VAL A 308 SHEET 1 AA2 4 SER A 242 PHE A 246 0 SHEET 2 AA2 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA2 4 TYR A 303 THR A 310 -1 O SER A 307 N CYS A 264 SHEET 4 AA2 4 GLU A 296 GLU A 297 -1 N GLU A 296 O ARG A 304 SHEET 1 AA3 4 VAL A 285 VAL A 287 0 SHEET 2 AA3 4 LYS A 277 VAL A 282 -1 N VAL A 282 O VAL A 285 SHEET 3 AA3 4 TYR A 322 SER A 327 -1 O LYS A 325 N ASN A 279 SHEET 4 AA3 4 ILE A 335 ILE A 339 -1 O ILE A 339 N TYR A 322 SHEET 1 AA4 4 GLN A 350 LEU A 354 0 SHEET 2 AA4 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA4 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA4 4 TYR A 394 THR A 396 -1 N LYS A 395 O LYS A 412 SHEET 1 AA5 4 GLN A 350 LEU A 354 0 SHEET 2 AA5 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA5 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA5 4 VAL A 400 LEU A 401 -1 N VAL A 400 O PHE A 408 SHEET 1 AA6 4 GLN A 389 PRO A 390 0 SHEET 2 AA6 4 ALA A 381 SER A 386 -1 N SER A 386 O GLN A 389 SHEET 3 AA6 4 PHE A 426 MET A 431 -1 O SER A 427 N GLU A 385 SHEET 4 AA6 4 THR A 440 LEU A 444 -1 O THR A 440 N VAL A 430 SHEET 1 AA7 4 SER B 242 PHE B 246 0 SHEET 2 AA7 4 GLU B 261 VAL B 269 -1 O VAL B 265 N PHE B 244 SHEET 3 AA7 4 TYR B 303 THR B 310 -1 O TYR B 303 N VAL B 269 SHEET 4 AA7 4 LYS B 291 THR B 292 -1 N LYS B 291 O VAL B 308 SHEET 1 AA8 4 SER B 242 PHE B 246 0 SHEET 2 AA8 4 GLU B 261 VAL B 269 -1 O VAL B 265 N PHE B 244 SHEET 3 AA8 4 TYR B 303 THR B 310 -1 O TYR B 303 N VAL B 269 SHEET 4 AA8 4 GLU B 296 GLU B 297 -1 N GLU B 296 O ARG B 304 SHEET 1 AA9 4 VAL B 285 VAL B 287 0 SHEET 2 AA9 4 LYS B 277 VAL B 282 -1 N VAL B 282 O VAL B 285 SHEET 3 AA9 4 TYR B 322 SER B 327 -1 O LYS B 323 N TYR B 281 SHEET 4 AA9 4 ILE B 335 ILE B 339 -1 O ILE B 335 N VAL B 326 SHEET 1 AB1 4 GLN B 350 LEU B 354 0 SHEET 2 AB1 4 GLN B 365 PHE B 375 -1 O LEU B 371 N TYR B 352 SHEET 3 AB1 4 PHE B 407 ASP B 416 -1 O LEU B 413 N LEU B 368 SHEET 4 AB1 4 TYR B 394 THR B 396 -1 N LYS B 395 O LYS B 412 SHEET 1 AB2 4 GLN B 350 LEU B 354 0 SHEET 2 AB2 4 GLN B 365 PHE B 375 -1 O LEU B 371 N TYR B 352 SHEET 3 AB2 4 PHE B 407 ASP B 416 -1 O LEU B 413 N LEU B 368 SHEET 4 AB2 4 VAL B 400 LEU B 401 -1 N VAL B 400 O PHE B 408 SHEET 1 AB3 4 GLN B 389 GLU B 391 0 SHEET 2 AB3 4 ALA B 381 SER B 386 -1 N TRP B 384 O GLU B 391 SHEET 3 AB3 4 PHE B 426 MET B 431 -1 O SER B 429 N GLU B 383 SHEET 4 AB3 4 THR B 440 LEU B 444 -1 O THR B 440 N VAL B 430 SSBOND 1 CYS A 264 CYS A 324 1555 1555 2.06 SSBOND 2 CYS A 370 CYS A 428 1555 1555 2.07 SSBOND 3 CYS B 264 CYS B 324 1555 1555 2.03 SSBOND 4 CYS B 370 CYS B 428 1555 1555 2.03 LINK ND2 ASN A 300 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 300 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 9 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.44 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.41 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.43 LINK O2 MAN C 7 C1 NAG C 8 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.43 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.44 CISPEP 1 TYR A 376 PRO A 377 0 -7.52 CISPEP 2 TYR B 376 PRO B 377 0 -8.02 CRYST1 49.912 79.959 138.352 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020035 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007228 0.00000