data_5VGS # _entry.id 5VGS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VGS pdb_00005vgs 10.2210/pdb5vgs/pdb WWPDB D_1000227394 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5VGL _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VGS _pdbx_database_status.recvd_initial_deposition_date 2017-04-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Silvaroli, J.A.' 1 ? 'Pleshinger, M.J.' 2 ? 'Banerjee, S.' 3 ? 'Kiser, P.D.' 4 ? 'Golczak, M.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 2296 _citation.page_last 2304 _citation.title 'Enzyme That Makes You Cry-Crystal Structure of Lachrymatory Factor Synthase from Allium cepa.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.7b00336 _citation.pdbx_database_id_PubMed 28708375 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Silvaroli, J.A.' 1 ? primary 'Pleshinger, M.J.' 2 ? primary 'Banerjee, S.' 3 ? primary 'Kiser, P.D.' 4 ? primary 'Golczak, M.' 5 ? # _cell.entry_id 5VGS _cell.length_a 38.930 _cell.length_b 40.100 _cell.length_c 97.630 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VGS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lachrymatory-factor synthase' 17577.947 1 ? ? ? ? 2 non-polymer syn '(2Z)-but-2-en-1-ol' 72.106 1 ? ? ? ? 3 non-polymer syn '(2E)-but-2-en-1-ol' 72.106 1 ? ? ? ? 4 water nat water 18.015 202 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPGISGGGGGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVA LDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKIEEVCSA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPGISGGGGGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVA LDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKIEEVCSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLY n 1 5 ILE n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 GLY n 1 12 LYS n 1 13 VAL n 1 14 HIS n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 PRO n 1 19 ASN n 1 20 THR n 1 21 LYS n 1 22 PRO n 1 23 GLU n 1 24 GLN n 1 25 ALA n 1 26 TRP n 1 27 THR n 1 28 LEU n 1 29 LEU n 1 30 LYS n 1 31 ASP n 1 32 PHE n 1 33 ILE n 1 34 ASN n 1 35 LEU n 1 36 HIS n 1 37 LYS n 1 38 VAL n 1 39 MET n 1 40 PRO n 1 41 SER n 1 42 LEU n 1 43 SER n 1 44 VAL n 1 45 CYS n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 GLU n 1 50 GLY n 1 51 GLU n 1 52 ALA n 1 53 ASN n 1 54 VAL n 1 55 VAL n 1 56 GLY n 1 57 CYS n 1 58 VAL n 1 59 ARG n 1 60 TYR n 1 61 VAL n 1 62 LYS n 1 63 GLY n 1 64 ILE n 1 65 MET n 1 66 HIS n 1 67 PRO n 1 68 ILE n 1 69 GLU n 1 70 GLU n 1 71 GLU n 1 72 PHE n 1 73 TRP n 1 74 ALA n 1 75 LYS n 1 76 GLU n 1 77 LYS n 1 78 LEU n 1 79 VAL n 1 80 ALA n 1 81 LEU n 1 82 ASP n 1 83 ASN n 1 84 LYS n 1 85 ASN n 1 86 MET n 1 87 SER n 1 88 TYR n 1 89 SER n 1 90 TYR n 1 91 ILE n 1 92 PHE n 1 93 THR n 1 94 GLU n 1 95 CYS n 1 96 PHE n 1 97 THR n 1 98 GLY n 1 99 TYR n 1 100 GLU n 1 101 ASP n 1 102 TYR n 1 103 THR n 1 104 ALA n 1 105 THR n 1 106 MET n 1 107 GLN n 1 108 ILE n 1 109 VAL n 1 110 GLU n 1 111 GLY n 1 112 PRO n 1 113 GLU n 1 114 HIS n 1 115 LYS n 1 116 GLY n 1 117 SER n 1 118 ARG n 1 119 PHE n 1 120 ASP n 1 121 TRP n 1 122 SER n 1 123 PHE n 1 124 GLN n 1 125 CYS n 1 126 LYS n 1 127 TYR n 1 128 ILE n 1 129 GLU n 1 130 GLY n 1 131 MET n 1 132 THR n 1 133 GLU n 1 134 SER n 1 135 ALA n 1 136 PHE n 1 137 THR n 1 138 GLU n 1 139 ILE n 1 140 LEU n 1 141 GLN n 1 142 HIS n 1 143 TRP n 1 144 ALA n 1 145 THR n 1 146 GLU n 1 147 ILE n 1 148 GLY n 1 149 GLN n 1 150 LYS n 1 151 ILE n 1 152 GLU n 1 153 GLU n 1 154 VAL n 1 155 CYS n 1 156 SER n 1 157 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 13 _entity_src_gen.pdbx_end_seq_num 157 _entity_src_gen.gene_src_common_name Onion _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene LFS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Allium cepa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4679 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LFS_ALLCE _struct_ref.pdbx_db_accession P59082 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVALDNKNMSYSYIF TECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKIEEVCSA ; _struct_ref.pdbx_align_begin 25 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VGS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59082 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VGS GLY A 1 ? UNP P59082 ? ? 'expression tag' 13 1 1 5VGS SER A 2 ? UNP P59082 ? ? 'expression tag' 14 2 1 5VGS PRO A 3 ? UNP P59082 ? ? 'expression tag' 15 3 1 5VGS GLY A 4 ? UNP P59082 ? ? 'expression tag' 16 4 1 5VGS ILE A 5 ? UNP P59082 ? ? 'expression tag' 17 5 1 5VGS SER A 6 ? UNP P59082 ? ? 'expression tag' 18 6 1 5VGS GLY A 7 ? UNP P59082 ? ? 'expression tag' 19 7 1 5VGS GLY A 8 ? UNP P59082 ? ? 'expression tag' 20 8 1 5VGS GLY A 9 ? UNP P59082 ? ? 'expression tag' 21 9 1 5VGS GLY A 10 ? UNP P59082 ? ? 'expression tag' 22 10 1 5VGS GLY A 11 ? UNP P59082 ? ? 'expression tag' 23 11 1 5VGS LYS A 12 ? UNP P59082 ? ? 'expression tag' 24 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9A4 non-polymer . '(2Z)-but-2-en-1-ol' ? 'C4 H8 O' 72.106 9A7 non-polymer . '(2E)-but-2-en-1-ol' ? 'C4 H8 O' 72.106 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VGS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, pH 4.5 containing PEG 3350 at concentrations between 25%-32% (w/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VGS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 40.10 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12549 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.0153 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.94 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 761 _reflns_shell.percent_possible_all 95.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.9 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.66 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5VGS _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12510 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.093 _refine.ls_d_res_high 1.900 _refine.ls_percent_reflns_obs 99.10 _refine.ls_R_factor_obs 0.1693 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1668 _refine.ls_R_factor_R_free 0.2152 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 628 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 5VGL _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.pdbx_overall_phase_error 21.65 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1210 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 202 _refine_hist.number_atoms_total 1422 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 37.093 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1258 'X-RAY DIFFRACTION' ? f_angle_d 0.994 ? ? 1698 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.516 ? ? 739 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 181 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 217 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9000 2.0912 2835 0.2144 97.00 0.2806 . . 164 . . 'X-RAY DIFFRACTION' . 2.0912 2.3938 2963 0.1688 100.00 0.2291 . . 143 . . 'X-RAY DIFFRACTION' . 2.3938 3.0157 2978 0.1708 100.00 0.2039 . . 161 . . 'X-RAY DIFFRACTION' . 3.0157 37.1000 3106 0.1511 99.00 0.1979 . . 160 . . # _struct.entry_id 5VGS _struct.title 'Crystal structure of lachrymatory factor synthase from Allium cepa in complex with crotyl alcohol' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VGS _struct_keywords.text 'lachrymatory factor, onion, sulfenic acid, crotyl alcohol, ISOMERASE' _struct_keywords.pdbx_keywords ISOMERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 21 ? LYS A 30 ? LYS A 33 LYS A 42 1 ? 10 HELX_P HELX_P2 AA2 ASP A 31 ? MET A 39 ? ASP A 43 MET A 51 5 ? 9 HELX_P HELX_P3 AA3 PRO A 112 ? LYS A 115 ? PRO A 124 LYS A 127 5 ? 4 HELX_P HELX_P4 AA4 THR A 132 ? CYS A 155 ? THR A 144 CYS A 167 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 66 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 78 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 67 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 79 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 9 ? LEU A 17 ? GLY A 21 LEU A 29 AA1 2 SER A 117 ? CYS A 125 ? SER A 129 CYS A 137 AA1 3 THR A 103 ? GLU A 110 ? THR A 115 GLU A 122 AA1 4 SER A 87 ? CYS A 95 ? SER A 99 CYS A 107 AA1 5 GLU A 70 ? ASP A 82 ? GLU A 82 ASP A 94 AA1 6 VAL A 58 ? MET A 65 ? VAL A 70 MET A 77 AA1 7 LEU A 42 ? GLU A 49 ? LEU A 54 GLU A 61 AA2 1 TYR A 99 ? GLU A 100 ? TYR A 111 GLU A 112 AA2 2 TYR A 127 ? ILE A 128 ? TYR A 139 ILE A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 13 ? N VAL A 25 O TRP A 121 ? O TRP A 133 AA1 2 3 O ASP A 120 ? O ASP A 132 N GLN A 107 ? N GLN A 119 AA1 3 4 O ALA A 104 ? O ALA A 116 N TYR A 90 ? N TYR A 102 AA1 4 5 O SER A 87 ? O SER A 99 N ASP A 82 ? N ASP A 94 AA1 5 6 O GLU A 70 ? O GLU A 82 N MET A 65 ? N MET A 77 AA1 6 7 O TYR A 60 ? O TYR A 72 N GLU A 46 ? N GLU A 58 AA2 1 2 N GLU A 100 ? N GLU A 112 O TYR A 127 ? O TYR A 139 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 9A4 201 ? 6 'binding site for residue 9A4 A 201' AC2 Software A 9A7 202 ? 7 'binding site for residue 9A7 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PHE A 72 ? PHE A 84 . ? 1_555 ? 2 AC1 6 GLU A 76 ? GLU A 88 . ? 1_555 ? 3 AC1 6 TYR A 90 ? TYR A 102 . ? 1_555 ? 4 AC1 6 TYR A 102 ? TYR A 114 . ? 1_555 ? 5 AC1 6 PHE A 136 ? PHE A 148 . ? 1_555 ? 6 AC1 6 9A7 C . ? 9A7 A 202 . ? 1_555 ? 7 AC2 7 PHE A 72 ? PHE A 84 . ? 1_555 ? 8 AC2 7 GLU A 76 ? GLU A 88 . ? 1_555 ? 9 AC2 7 TYR A 90 ? TYR A 102 . ? 1_555 ? 10 AC2 7 TYR A 102 ? TYR A 114 . ? 1_555 ? 11 AC2 7 ALA A 104 ? ALA A 116 . ? 1_555 ? 12 AC2 7 TRP A 121 ? TRP A 133 . ? 1_555 ? 13 AC2 7 9A4 B . ? 9A4 A 201 . ? 1_555 ? # _atom_sites.entry_id 5VGS _atom_sites.fract_transf_matrix[1][1] 0.025687 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024938 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 13 ? ? ? A . n A 1 2 SER 2 14 ? ? ? A . n A 1 3 PRO 3 15 ? ? ? A . n A 1 4 GLY 4 16 16 GLY GLY A . n A 1 5 ILE 5 17 17 ILE ILE A . n A 1 6 SER 6 18 18 SER SER A . n A 1 7 GLY 7 19 19 GLY GLY A . n A 1 8 GLY 8 20 20 GLY GLY A . n A 1 9 GLY 9 21 21 GLY GLY A . n A 1 10 GLY 10 22 22 GLY GLY A . n A 1 11 GLY 11 23 23 GLY GLY A . n A 1 12 LYS 12 24 24 LYS LYS A . n A 1 13 VAL 13 25 25 VAL VAL A . n A 1 14 HIS 14 26 26 HIS HIS A . n A 1 15 ALA 15 27 27 ALA ALA A . n A 1 16 LEU 16 28 28 LEU LEU A . n A 1 17 LEU 17 29 29 LEU LEU A . n A 1 18 PRO 18 30 30 PRO PRO A . n A 1 19 ASN 19 31 31 ASN ASN A . n A 1 20 THR 20 32 32 THR THR A . n A 1 21 LYS 21 33 33 LYS LYS A . n A 1 22 PRO 22 34 34 PRO PRO A . n A 1 23 GLU 23 35 35 GLU GLU A . n A 1 24 GLN 24 36 36 GLN GLN A . n A 1 25 ALA 25 37 37 ALA ALA A . n A 1 26 TRP 26 38 38 TRP TRP A . n A 1 27 THR 27 39 39 THR THR A . n A 1 28 LEU 28 40 40 LEU LEU A . n A 1 29 LEU 29 41 41 LEU LEU A . n A 1 30 LYS 30 42 42 LYS LYS A . n A 1 31 ASP 31 43 43 ASP ASP A . n A 1 32 PHE 32 44 44 PHE PHE A . n A 1 33 ILE 33 45 45 ILE ILE A . n A 1 34 ASN 34 46 46 ASN ASN A . n A 1 35 LEU 35 47 47 LEU LEU A . n A 1 36 HIS 36 48 48 HIS HIS A . n A 1 37 LYS 37 49 49 LYS LYS A . n A 1 38 VAL 38 50 50 VAL VAL A . n A 1 39 MET 39 51 51 MET MET A . n A 1 40 PRO 40 52 52 PRO PRO A . n A 1 41 SER 41 53 53 SER SER A . n A 1 42 LEU 42 54 54 LEU LEU A . n A 1 43 SER 43 55 55 SER SER A . n A 1 44 VAL 44 56 56 VAL VAL A . n A 1 45 CYS 45 57 57 CYS CYS A . n A 1 46 GLU 46 58 58 GLU GLU A . n A 1 47 LEU 47 59 59 LEU LEU A . n A 1 48 VAL 48 60 60 VAL VAL A . n A 1 49 GLU 49 61 61 GLU GLU A . n A 1 50 GLY 50 62 62 GLY GLY A . n A 1 51 GLU 51 63 63 GLU GLU A . n A 1 52 ALA 52 64 64 ALA ALA A . n A 1 53 ASN 53 65 65 ASN ASN A . n A 1 54 VAL 54 66 66 VAL VAL A . n A 1 55 VAL 55 67 67 VAL VAL A . n A 1 56 GLY 56 68 68 GLY GLY A . n A 1 57 CYS 57 69 69 CYS CYS A . n A 1 58 VAL 58 70 70 VAL VAL A . n A 1 59 ARG 59 71 71 ARG ARG A . n A 1 60 TYR 60 72 72 TYR TYR A . n A 1 61 VAL 61 73 73 VAL VAL A . n A 1 62 LYS 62 74 74 LYS LYS A . n A 1 63 GLY 63 75 75 GLY GLY A . n A 1 64 ILE 64 76 76 ILE ILE A . n A 1 65 MET 65 77 77 MET MET A . n A 1 66 HIS 66 78 78 HIS HIS A . n A 1 67 PRO 67 79 79 PRO PRO A . n A 1 68 ILE 68 80 80 ILE ILE A . n A 1 69 GLU 69 81 81 GLU GLU A . n A 1 70 GLU 70 82 82 GLU GLU A . n A 1 71 GLU 71 83 83 GLU GLU A . n A 1 72 PHE 72 84 84 PHE PHE A . n A 1 73 TRP 73 85 85 TRP TRP A . n A 1 74 ALA 74 86 86 ALA ALA A . n A 1 75 LYS 75 87 87 LYS LYS A . n A 1 76 GLU 76 88 88 GLU GLU A . n A 1 77 LYS 77 89 89 LYS LYS A . n A 1 78 LEU 78 90 90 LEU LEU A . n A 1 79 VAL 79 91 91 VAL VAL A . n A 1 80 ALA 80 92 92 ALA ALA A . n A 1 81 LEU 81 93 93 LEU LEU A . n A 1 82 ASP 82 94 94 ASP ASP A . n A 1 83 ASN 83 95 95 ASN ASN A . n A 1 84 LYS 84 96 96 LYS LYS A . n A 1 85 ASN 85 97 97 ASN ASN A . n A 1 86 MET 86 98 98 MET MET A . n A 1 87 SER 87 99 99 SER SER A . n A 1 88 TYR 88 100 100 TYR TYR A . n A 1 89 SER 89 101 101 SER SER A . n A 1 90 TYR 90 102 102 TYR TYR A . n A 1 91 ILE 91 103 103 ILE ILE A . n A 1 92 PHE 92 104 104 PHE PHE A . n A 1 93 THR 93 105 105 THR THR A . n A 1 94 GLU 94 106 106 GLU GLU A . n A 1 95 CYS 95 107 107 CYS CYS A . n A 1 96 PHE 96 108 108 PHE PHE A . n A 1 97 THR 97 109 109 THR THR A . n A 1 98 GLY 98 110 110 GLY GLY A . n A 1 99 TYR 99 111 111 TYR TYR A . n A 1 100 GLU 100 112 112 GLU GLU A . n A 1 101 ASP 101 113 113 ASP ASP A . n A 1 102 TYR 102 114 114 TYR TYR A . n A 1 103 THR 103 115 115 THR THR A . n A 1 104 ALA 104 116 116 ALA ALA A . n A 1 105 THR 105 117 117 THR THR A . n A 1 106 MET 106 118 118 MET MET A . n A 1 107 GLN 107 119 119 GLN GLN A . n A 1 108 ILE 108 120 120 ILE ILE A . n A 1 109 VAL 109 121 121 VAL VAL A . n A 1 110 GLU 110 122 122 GLU GLU A . n A 1 111 GLY 111 123 123 GLY GLY A . n A 1 112 PRO 112 124 124 PRO PRO A . n A 1 113 GLU 113 125 125 GLU GLU A . n A 1 114 HIS 114 126 126 HIS HIS A . n A 1 115 LYS 115 127 127 LYS LYS A . n A 1 116 GLY 116 128 128 GLY GLY A . n A 1 117 SER 117 129 129 SER SER A . n A 1 118 ARG 118 130 130 ARG ARG A . n A 1 119 PHE 119 131 131 PHE PHE A . n A 1 120 ASP 120 132 132 ASP ASP A . n A 1 121 TRP 121 133 133 TRP TRP A . n A 1 122 SER 122 134 134 SER SER A . n A 1 123 PHE 123 135 135 PHE PHE A . n A 1 124 GLN 124 136 136 GLN GLN A . n A 1 125 CYS 125 137 137 CYS CYS A . n A 1 126 LYS 126 138 138 LYS LYS A . n A 1 127 TYR 127 139 139 TYR TYR A . n A 1 128 ILE 128 140 140 ILE ILE A . n A 1 129 GLU 129 141 141 GLU GLU A . n A 1 130 GLY 130 142 142 GLY GLY A . n A 1 131 MET 131 143 143 MET MET A . n A 1 132 THR 132 144 144 THR THR A . n A 1 133 GLU 133 145 145 GLU GLU A . n A 1 134 SER 134 146 146 SER SER A . n A 1 135 ALA 135 147 147 ALA ALA A . n A 1 136 PHE 136 148 148 PHE PHE A . n A 1 137 THR 137 149 149 THR THR A . n A 1 138 GLU 138 150 150 GLU GLU A . n A 1 139 ILE 139 151 151 ILE ILE A . n A 1 140 LEU 140 152 152 LEU LEU A . n A 1 141 GLN 141 153 153 GLN GLN A . n A 1 142 HIS 142 154 154 HIS HIS A . n A 1 143 TRP 143 155 155 TRP TRP A . n A 1 144 ALA 144 156 156 ALA ALA A . n A 1 145 THR 145 157 157 THR THR A . n A 1 146 GLU 146 158 158 GLU GLU A . n A 1 147 ILE 147 159 159 ILE ILE A . n A 1 148 GLY 148 160 160 GLY GLY A . n A 1 149 GLN 149 161 161 GLN GLN A . n A 1 150 LYS 150 162 162 LYS LYS A . n A 1 151 ILE 151 163 163 ILE ILE A . n A 1 152 GLU 152 164 164 GLU GLU A . n A 1 153 GLU 153 165 165 GLU GLU A . n A 1 154 VAL 154 166 166 VAL VAL A . n A 1 155 CYS 155 167 167 CYS CYS A . n A 1 156 SER 156 168 168 SER SER A . n A 1 157 ALA 157 169 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9A4 1 201 1 9A4 9A4 A . C 3 9A7 1 202 1 9A7 9A7 A . D 4 HOH 1 301 59 HOH HOH A . D 4 HOH 2 302 318 HOH HOH A . D 4 HOH 3 303 10 HOH HOH A . D 4 HOH 4 304 206 HOH HOH A . D 4 HOH 5 305 18 HOH HOH A . D 4 HOH 6 306 112 HOH HOH A . D 4 HOH 7 307 58 HOH HOH A . D 4 HOH 8 308 33 HOH HOH A . D 4 HOH 9 309 103 HOH HOH A . D 4 HOH 10 310 162 HOH HOH A . D 4 HOH 11 311 317 HOH HOH A . D 4 HOH 12 312 15 HOH HOH A . D 4 HOH 13 313 135 HOH HOH A . D 4 HOH 14 314 31 HOH HOH A . D 4 HOH 15 315 69 HOH HOH A . D 4 HOH 16 316 61 HOH HOH A . D 4 HOH 17 317 22 HOH HOH A . D 4 HOH 18 318 35 HOH HOH A . D 4 HOH 19 319 28 HOH HOH A . D 4 HOH 20 320 2 HOH HOH A . D 4 HOH 21 321 209 HOH HOH A . D 4 HOH 22 322 91 HOH HOH A . D 4 HOH 23 323 192 HOH HOH A . D 4 HOH 24 324 9 HOH HOH A . D 4 HOH 25 325 275 HOH HOH A . D 4 HOH 26 326 29 HOH HOH A . D 4 HOH 27 327 12 HOH HOH A . D 4 HOH 28 328 56 HOH HOH A . D 4 HOH 29 329 78 HOH HOH A . D 4 HOH 30 330 255 HOH HOH A . D 4 HOH 31 331 194 HOH HOH A . D 4 HOH 32 332 181 HOH HOH A . D 4 HOH 33 333 81 HOH HOH A . D 4 HOH 34 334 48 HOH HOH A . D 4 HOH 35 335 54 HOH HOH A . D 4 HOH 36 336 322 HOH HOH A . D 4 HOH 37 337 123 HOH HOH A . D 4 HOH 38 338 106 HOH HOH A . D 4 HOH 39 339 108 HOH HOH A . D 4 HOH 40 340 178 HOH HOH A . D 4 HOH 41 341 126 HOH HOH A . D 4 HOH 42 342 199 HOH HOH A . D 4 HOH 43 343 80 HOH HOH A . D 4 HOH 44 344 1 HOH HOH A . D 4 HOH 45 345 79 HOH HOH A . D 4 HOH 46 346 65 HOH HOH A . D 4 HOH 47 347 109 HOH HOH A . D 4 HOH 48 348 172 HOH HOH A . D 4 HOH 49 349 118 HOH HOH A . D 4 HOH 50 350 189 HOH HOH A . D 4 HOH 51 351 96 HOH HOH A . D 4 HOH 52 352 5 HOH HOH A . D 4 HOH 53 353 89 HOH HOH A . D 4 HOH 54 354 42 HOH HOH A . D 4 HOH 55 355 57 HOH HOH A . D 4 HOH 56 356 45 HOH HOH A . D 4 HOH 57 357 8 HOH HOH A . D 4 HOH 58 358 46 HOH HOH A . D 4 HOH 59 359 60 HOH HOH A . D 4 HOH 60 360 50 HOH HOH A . D 4 HOH 61 361 111 HOH HOH A . D 4 HOH 62 362 316 HOH HOH A . D 4 HOH 63 363 27 HOH HOH A . D 4 HOH 64 364 19 HOH HOH A . D 4 HOH 65 365 53 HOH HOH A . D 4 HOH 66 366 279 HOH HOH A . D 4 HOH 67 367 7 HOH HOH A . D 4 HOH 68 368 119 HOH HOH A . D 4 HOH 69 369 32 HOH HOH A . D 4 HOH 70 370 182 HOH HOH A . D 4 HOH 71 371 86 HOH HOH A . D 4 HOH 72 372 16 HOH HOH A . D 4 HOH 73 373 64 HOH HOH A . D 4 HOH 74 374 39 HOH HOH A . D 4 HOH 75 375 17 HOH HOH A . D 4 HOH 76 376 94 HOH HOH A . D 4 HOH 77 377 3 HOH HOH A . D 4 HOH 78 378 132 HOH HOH A . D 4 HOH 79 379 4 HOH HOH A . D 4 HOH 80 380 100 HOH HOH A . D 4 HOH 81 381 320 HOH HOH A . D 4 HOH 82 382 104 HOH HOH A . D 4 HOH 83 383 52 HOH HOH A . D 4 HOH 84 384 326 HOH HOH A . D 4 HOH 85 385 44 HOH HOH A . D 4 HOH 86 386 70 HOH HOH A . D 4 HOH 87 387 110 HOH HOH A . D 4 HOH 88 388 97 HOH HOH A . D 4 HOH 89 389 63 HOH HOH A . D 4 HOH 90 390 20 HOH HOH A . D 4 HOH 91 391 37 HOH HOH A . D 4 HOH 92 392 133 HOH HOH A . D 4 HOH 93 393 43 HOH HOH A . D 4 HOH 94 394 30 HOH HOH A . D 4 HOH 95 395 36 HOH HOH A . D 4 HOH 96 396 38 HOH HOH A . D 4 HOH 97 397 93 HOH HOH A . D 4 HOH 98 398 62 HOH HOH A . D 4 HOH 99 399 296 HOH HOH A . D 4 HOH 100 400 293 HOH HOH A . D 4 HOH 101 401 24 HOH HOH A . D 4 HOH 102 402 87 HOH HOH A . D 4 HOH 103 403 127 HOH HOH A . D 4 HOH 104 404 47 HOH HOH A . D 4 HOH 105 405 66 HOH HOH A . D 4 HOH 106 406 25 HOH HOH A . D 4 HOH 107 407 49 HOH HOH A . D 4 HOH 108 408 13 HOH HOH A . D 4 HOH 109 409 205 HOH HOH A . D 4 HOH 110 410 6 HOH HOH A . D 4 HOH 111 411 213 HOH HOH A . D 4 HOH 112 412 11 HOH HOH A . D 4 HOH 113 413 183 HOH HOH A . D 4 HOH 114 414 92 HOH HOH A . D 4 HOH 115 415 198 HOH HOH A . D 4 HOH 116 416 90 HOH HOH A . D 4 HOH 117 417 328 HOH HOH A . D 4 HOH 118 418 107 HOH HOH A . D 4 HOH 119 419 73 HOH HOH A . D 4 HOH 120 420 105 HOH HOH A . D 4 HOH 121 421 223 HOH HOH A . D 4 HOH 122 422 196 HOH HOH A . D 4 HOH 123 423 170 HOH HOH A . D 4 HOH 124 424 154 HOH HOH A . D 4 HOH 125 425 130 HOH HOH A . D 4 HOH 126 426 84 HOH HOH A . D 4 HOH 127 427 67 HOH HOH A . D 4 HOH 128 428 312 HOH HOH A . D 4 HOH 129 429 323 HOH HOH A . D 4 HOH 130 430 131 HOH HOH A . D 4 HOH 131 431 21 HOH HOH A . D 4 HOH 132 432 144 HOH HOH A . D 4 HOH 133 433 76 HOH HOH A . D 4 HOH 134 434 34 HOH HOH A . D 4 HOH 135 435 72 HOH HOH A . D 4 HOH 136 436 149 HOH HOH A . D 4 HOH 137 437 298 HOH HOH A . D 4 HOH 138 438 313 HOH HOH A . D 4 HOH 139 439 188 HOH HOH A . D 4 HOH 140 440 314 HOH HOH A . D 4 HOH 141 441 98 HOH HOH A . D 4 HOH 142 442 129 HOH HOH A . D 4 HOH 143 443 231 HOH HOH A . D 4 HOH 144 444 159 HOH HOH A . D 4 HOH 145 445 116 HOH HOH A . D 4 HOH 146 446 197 HOH HOH A . D 4 HOH 147 447 315 HOH HOH A . D 4 HOH 148 448 166 HOH HOH A . D 4 HOH 149 449 82 HOH HOH A . D 4 HOH 150 450 303 HOH HOH A . D 4 HOH 151 451 148 HOH HOH A . D 4 HOH 152 452 113 HOH HOH A . D 4 HOH 153 453 292 HOH HOH A . D 4 HOH 154 454 165 HOH HOH A . D 4 HOH 155 455 266 HOH HOH A . D 4 HOH 156 456 234 HOH HOH A . D 4 HOH 157 457 137 HOH HOH A . D 4 HOH 158 458 41 HOH HOH A . D 4 HOH 159 459 177 HOH HOH A . D 4 HOH 160 460 216 HOH HOH A . D 4 HOH 161 461 190 HOH HOH A . D 4 HOH 162 462 145 HOH HOH A . D 4 HOH 163 463 155 HOH HOH A . D 4 HOH 164 464 114 HOH HOH A . D 4 HOH 165 465 158 HOH HOH A . D 4 HOH 166 466 207 HOH HOH A . D 4 HOH 167 467 327 HOH HOH A . D 4 HOH 168 468 173 HOH HOH A . D 4 HOH 169 469 74 HOH HOH A . D 4 HOH 170 470 212 HOH HOH A . D 4 HOH 171 471 319 HOH HOH A . D 4 HOH 172 472 179 HOH HOH A . D 4 HOH 173 473 300 HOH HOH A . D 4 HOH 174 474 254 HOH HOH A . D 4 HOH 175 475 156 HOH HOH A . D 4 HOH 176 476 325 HOH HOH A . D 4 HOH 177 477 287 HOH HOH A . D 4 HOH 178 478 274 HOH HOH A . D 4 HOH 179 479 77 HOH HOH A . D 4 HOH 180 480 195 HOH HOH A . D 4 HOH 181 481 121 HOH HOH A . D 4 HOH 182 482 236 HOH HOH A . D 4 HOH 183 483 128 HOH HOH A . D 4 HOH 184 484 51 HOH HOH A . D 4 HOH 185 485 23 HOH HOH A . D 4 HOH 186 486 238 HOH HOH A . D 4 HOH 187 487 252 HOH HOH A . D 4 HOH 188 488 101 HOH HOH A . D 4 HOH 189 489 102 HOH HOH A . D 4 HOH 190 490 324 HOH HOH A . D 4 HOH 191 491 285 HOH HOH A . D 4 HOH 192 492 286 HOH HOH A . D 4 HOH 193 493 321 HOH HOH A . D 4 HOH 194 494 185 HOH HOH A . D 4 HOH 195 495 208 HOH HOH A . D 4 HOH 196 496 124 HOH HOH A . D 4 HOH 197 497 117 HOH HOH A . D 4 HOH 198 498 242 HOH HOH A . D 4 HOH 199 499 95 HOH HOH A . D 4 HOH 200 500 138 HOH HOH A . D 4 HOH 201 501 75 HOH HOH A . D 4 HOH 202 502 146 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-26 2 'Structure model' 1 1 2017-08-02 3 'Structure model' 1 2 2017-09-27 4 'Structure model' 1 3 2019-12-11 5 'Structure model' 1 4 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 394 ? ? O A HOH 451 ? ? 1.89 2 1 O A HOH 477 ? ? O A HOH 492 ? ? 1.93 3 1 O A HOH 302 ? ? O A HOH 331 ? ? 2.08 4 1 O A HOH 374 ? ? O A HOH 449 ? ? 2.12 5 1 OE1 A GLU 35 ? ? O A HOH 301 ? ? 2.14 6 1 O A HOH 337 ? ? O A HOH 392 ? ? 2.15 7 1 O A ASP 43 ? ? O A HOH 302 ? ? 2.18 8 1 O A HOH 436 ? ? O A HOH 439 ? ? 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -119.08 _pdbx_validate_torsion.psi 76.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 13 ? A GLY 1 2 1 Y 1 A SER 14 ? A SER 2 3 1 Y 1 A PRO 15 ? A PRO 3 4 1 Y 1 A ALA 169 ? A ALA 157 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 9A4 O01 O N N 1 9A4 C02 C N N 2 9A4 C03 C N N 3 9A4 C04 C N N 4 9A4 C05 C N N 5 9A4 H011 H N N 6 9A4 H021 H N N 7 9A4 H022 H N N 8 9A4 H031 H N N 9 9A4 H041 H N N 10 9A4 H051 H N N 11 9A4 H053 H N N 12 9A4 H052 H N N 13 9A7 O01 O N N 14 9A7 C02 C N N 15 9A7 C03 C N N 16 9A7 C04 C N N 17 9A7 C05 C N N 18 9A7 H011 H N N 19 9A7 H022 H N N 20 9A7 H021 H N N 21 9A7 H031 H N N 22 9A7 H041 H N N 23 9A7 H053 H N N 24 9A7 H051 H N N 25 9A7 H052 H N N 26 ALA N N N N 27 ALA CA C N S 28 ALA C C N N 29 ALA O O N N 30 ALA CB C N N 31 ALA OXT O N N 32 ALA H H N N 33 ALA H2 H N N 34 ALA HA H N N 35 ALA HB1 H N N 36 ALA HB2 H N N 37 ALA HB3 H N N 38 ALA HXT H N N 39 ARG N N N N 40 ARG CA C N S 41 ARG C C N N 42 ARG O O N N 43 ARG CB C N N 44 ARG CG C N N 45 ARG CD C N N 46 ARG NE N N N 47 ARG CZ C N N 48 ARG NH1 N N N 49 ARG NH2 N N N 50 ARG OXT O N N 51 ARG H H N N 52 ARG H2 H N N 53 ARG HA H N N 54 ARG HB2 H N N 55 ARG HB3 H N N 56 ARG HG2 H N N 57 ARG HG3 H N N 58 ARG HD2 H N N 59 ARG HD3 H N N 60 ARG HE H N N 61 ARG HH11 H N N 62 ARG HH12 H N N 63 ARG HH21 H N N 64 ARG HH22 H N N 65 ARG HXT H N N 66 ASN N N N N 67 ASN CA C N S 68 ASN C C N N 69 ASN O O N N 70 ASN CB C N N 71 ASN CG C N N 72 ASN OD1 O N N 73 ASN ND2 N N N 74 ASN OXT O N N 75 ASN H H N N 76 ASN H2 H N N 77 ASN HA H N N 78 ASN HB2 H N N 79 ASN HB3 H N N 80 ASN HD21 H N N 81 ASN HD22 H N N 82 ASN HXT H N N 83 ASP N N N N 84 ASP CA C N S 85 ASP C C N N 86 ASP O O N N 87 ASP CB C N N 88 ASP CG C N N 89 ASP OD1 O N N 90 ASP OD2 O N N 91 ASP OXT O N N 92 ASP H H N N 93 ASP H2 H N N 94 ASP HA H N N 95 ASP HB2 H N N 96 ASP HB3 H N N 97 ASP HD2 H N N 98 ASP HXT H N N 99 CYS N N N N 100 CYS CA C N R 101 CYS C C N N 102 CYS O O N N 103 CYS CB C N N 104 CYS SG S N N 105 CYS OXT O N N 106 CYS H H N N 107 CYS H2 H N N 108 CYS HA H N N 109 CYS HB2 H N N 110 CYS HB3 H N N 111 CYS HG H N N 112 CYS HXT H N N 113 GLN N N N N 114 GLN CA C N S 115 GLN C C N N 116 GLN O O N N 117 GLN CB C N N 118 GLN CG C N N 119 GLN CD C N N 120 GLN OE1 O N N 121 GLN NE2 N N N 122 GLN OXT O N N 123 GLN H H N N 124 GLN H2 H N N 125 GLN HA H N N 126 GLN HB2 H N N 127 GLN HB3 H N N 128 GLN HG2 H N N 129 GLN HG3 H N N 130 GLN HE21 H N N 131 GLN HE22 H N N 132 GLN HXT H N N 133 GLU N N N N 134 GLU CA C N S 135 GLU C C N N 136 GLU O O N N 137 GLU CB C N N 138 GLU CG C N N 139 GLU CD C N N 140 GLU OE1 O N N 141 GLU OE2 O N N 142 GLU OXT O N N 143 GLU H H N N 144 GLU H2 H N N 145 GLU HA H N N 146 GLU HB2 H N N 147 GLU HB3 H N N 148 GLU HG2 H N N 149 GLU HG3 H N N 150 GLU HE2 H N N 151 GLU HXT H N N 152 GLY N N N N 153 GLY CA C N N 154 GLY C C N N 155 GLY O O N N 156 GLY OXT O N N 157 GLY H H N N 158 GLY H2 H N N 159 GLY HA2 H N N 160 GLY HA3 H N N 161 GLY HXT H N N 162 HIS N N N N 163 HIS CA C N S 164 HIS C C N N 165 HIS O O N N 166 HIS CB C N N 167 HIS CG C Y N 168 HIS ND1 N Y N 169 HIS CD2 C Y N 170 HIS CE1 C Y N 171 HIS NE2 N Y N 172 HIS OXT O N N 173 HIS H H N N 174 HIS H2 H N N 175 HIS HA H N N 176 HIS HB2 H N N 177 HIS HB3 H N N 178 HIS HD1 H N N 179 HIS HD2 H N N 180 HIS HE1 H N N 181 HIS HE2 H N N 182 HIS HXT H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 ILE N N N N 187 ILE CA C N S 188 ILE C C N N 189 ILE O O N N 190 ILE CB C N S 191 ILE CG1 C N N 192 ILE CG2 C N N 193 ILE CD1 C N N 194 ILE OXT O N N 195 ILE H H N N 196 ILE H2 H N N 197 ILE HA H N N 198 ILE HB H N N 199 ILE HG12 H N N 200 ILE HG13 H N N 201 ILE HG21 H N N 202 ILE HG22 H N N 203 ILE HG23 H N N 204 ILE HD11 H N N 205 ILE HD12 H N N 206 ILE HD13 H N N 207 ILE HXT H N N 208 LEU N N N N 209 LEU CA C N S 210 LEU C C N N 211 LEU O O N N 212 LEU CB C N N 213 LEU CG C N N 214 LEU CD1 C N N 215 LEU CD2 C N N 216 LEU OXT O N N 217 LEU H H N N 218 LEU H2 H N N 219 LEU HA H N N 220 LEU HB2 H N N 221 LEU HB3 H N N 222 LEU HG H N N 223 LEU HD11 H N N 224 LEU HD12 H N N 225 LEU HD13 H N N 226 LEU HD21 H N N 227 LEU HD22 H N N 228 LEU HD23 H N N 229 LEU HXT H N N 230 LYS N N N N 231 LYS CA C N S 232 LYS C C N N 233 LYS O O N N 234 LYS CB C N N 235 LYS CG C N N 236 LYS CD C N N 237 LYS CE C N N 238 LYS NZ N N N 239 LYS OXT O N N 240 LYS H H N N 241 LYS H2 H N N 242 LYS HA H N N 243 LYS HB2 H N N 244 LYS HB3 H N N 245 LYS HG2 H N N 246 LYS HG3 H N N 247 LYS HD2 H N N 248 LYS HD3 H N N 249 LYS HE2 H N N 250 LYS HE3 H N N 251 LYS HZ1 H N N 252 LYS HZ2 H N N 253 LYS HZ3 H N N 254 LYS HXT H N N 255 MET N N N N 256 MET CA C N S 257 MET C C N N 258 MET O O N N 259 MET CB C N N 260 MET CG C N N 261 MET SD S N N 262 MET CE C N N 263 MET OXT O N N 264 MET H H N N 265 MET H2 H N N 266 MET HA H N N 267 MET HB2 H N N 268 MET HB3 H N N 269 MET HG2 H N N 270 MET HG3 H N N 271 MET HE1 H N N 272 MET HE2 H N N 273 MET HE3 H N N 274 MET HXT H N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TRP N N N N 347 TRP CA C N S 348 TRP C C N N 349 TRP O O N N 350 TRP CB C N N 351 TRP CG C Y N 352 TRP CD1 C Y N 353 TRP CD2 C Y N 354 TRP NE1 N Y N 355 TRP CE2 C Y N 356 TRP CE3 C Y N 357 TRP CZ2 C Y N 358 TRP CZ3 C Y N 359 TRP CH2 C Y N 360 TRP OXT O N N 361 TRP H H N N 362 TRP H2 H N N 363 TRP HA H N N 364 TRP HB2 H N N 365 TRP HB3 H N N 366 TRP HD1 H N N 367 TRP HE1 H N N 368 TRP HE3 H N N 369 TRP HZ2 H N N 370 TRP HZ3 H N N 371 TRP HH2 H N N 372 TRP HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9A4 C04 C03 doub N Z 1 9A4 C04 C05 sing N N 2 9A4 C03 C02 sing N N 3 9A4 O01 C02 sing N N 4 9A4 O01 H011 sing N N 5 9A4 C02 H021 sing N N 6 9A4 C02 H022 sing N N 7 9A4 C03 H031 sing N N 8 9A4 C04 H041 sing N N 9 9A4 C05 H051 sing N N 10 9A4 C05 H053 sing N N 11 9A4 C05 H052 sing N N 12 9A7 C05 C04 sing N N 13 9A7 C04 C03 doub N E 14 9A7 C03 C02 sing N N 15 9A7 O01 C02 sing N N 16 9A7 O01 H011 sing N N 17 9A7 C02 H022 sing N N 18 9A7 C02 H021 sing N N 19 9A7 C03 H031 sing N N 20 9A7 C04 H041 sing N N 21 9A7 C05 H053 sing N N 22 9A7 C05 H051 sing N N 23 9A7 C05 H052 sing N N 24 ALA N CA sing N N 25 ALA N H sing N N 26 ALA N H2 sing N N 27 ALA CA C sing N N 28 ALA CA CB sing N N 29 ALA CA HA sing N N 30 ALA C O doub N N 31 ALA C OXT sing N N 32 ALA CB HB1 sing N N 33 ALA CB HB2 sing N N 34 ALA CB HB3 sing N N 35 ALA OXT HXT sing N N 36 ARG N CA sing N N 37 ARG N H sing N N 38 ARG N H2 sing N N 39 ARG CA C sing N N 40 ARG CA CB sing N N 41 ARG CA HA sing N N 42 ARG C O doub N N 43 ARG C OXT sing N N 44 ARG CB CG sing N N 45 ARG CB HB2 sing N N 46 ARG CB HB3 sing N N 47 ARG CG CD sing N N 48 ARG CG HG2 sing N N 49 ARG CG HG3 sing N N 50 ARG CD NE sing N N 51 ARG CD HD2 sing N N 52 ARG CD HD3 sing N N 53 ARG NE CZ sing N N 54 ARG NE HE sing N N 55 ARG CZ NH1 sing N N 56 ARG CZ NH2 doub N N 57 ARG NH1 HH11 sing N N 58 ARG NH1 HH12 sing N N 59 ARG NH2 HH21 sing N N 60 ARG NH2 HH22 sing N N 61 ARG OXT HXT sing N N 62 ASN N CA sing N N 63 ASN N H sing N N 64 ASN N H2 sing N N 65 ASN CA C sing N N 66 ASN CA CB sing N N 67 ASN CA HA sing N N 68 ASN C O doub N N 69 ASN C OXT sing N N 70 ASN CB CG sing N N 71 ASN CB HB2 sing N N 72 ASN CB HB3 sing N N 73 ASN CG OD1 doub N N 74 ASN CG ND2 sing N N 75 ASN ND2 HD21 sing N N 76 ASN ND2 HD22 sing N N 77 ASN OXT HXT sing N N 78 ASP N CA sing N N 79 ASP N H sing N N 80 ASP N H2 sing N N 81 ASP CA C sing N N 82 ASP CA CB sing N N 83 ASP CA HA sing N N 84 ASP C O doub N N 85 ASP C OXT sing N N 86 ASP CB CG sing N N 87 ASP CB HB2 sing N N 88 ASP CB HB3 sing N N 89 ASP CG OD1 doub N N 90 ASP CG OD2 sing N N 91 ASP OD2 HD2 sing N N 92 ASP OXT HXT sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Eye Institute (NIH/NEI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number EY023948 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2Z)-but-2-en-1-ol' 9A4 3 '(2E)-but-2-en-1-ol' 9A7 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5VGL _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #