HEADER UNKNOWN FUNCTION 17-APR-17 5VIX TITLE CRYSTAL STRUCTURE OF POLYUBIQUITIN WITH 3 UB DOMAINS, DOMAINS 1 AND 2, TITLE 2 FROM NAEGLERIA FOWLERI ATCC 30863 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-152; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NAEGLERIA FOWLERI; SOURCE 3 ORGANISM_COMMON: AMOEBA; SOURCE 4 ORGANISM_TAXID: 5763; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NAFOA.19251.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, NAEGLERIA FOWLERI, POLYUBIQUITIN, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 04-OCT-23 5VIX 1 REMARK REVDAT 4 17-JUN-20 5VIX 1 SOURCE ATOM REVDAT 3 03-JUL-19 5VIX 1 TITLE JRNL REVDAT 2 11-OCT-17 5VIX 1 REMARK REVDAT 1 24-MAY-17 5VIX 0 JRNL AUTH J.ABENDROTH,S.J.MAYCLIN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF POLYUBIQUITIN WITH 3 UB DOMAINS, JRNL TITL 2 DOMAINS 1 AND 2, FROM NAEGLERIA FOWLERI ATCC 30863 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 21330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6147 - 3.6432 0.99 1520 166 0.1410 0.1665 REMARK 3 2 3.6432 - 2.8923 1.00 1484 170 0.1560 0.1905 REMARK 3 3 2.8923 - 2.5268 1.00 1496 150 0.1805 0.2100 REMARK 3 4 2.5268 - 2.2959 1.00 1534 119 0.1804 0.2260 REMARK 3 5 2.2959 - 2.1314 1.00 1509 139 0.1750 0.2070 REMARK 3 6 2.1314 - 2.0057 1.00 1524 114 0.1645 0.2225 REMARK 3 7 2.0057 - 1.9053 0.99 1519 127 0.1722 0.1975 REMARK 3 8 1.9053 - 1.8223 0.99 1490 147 0.1865 0.2197 REMARK 3 9 1.8223 - 1.7522 0.99 1496 152 0.2078 0.2581 REMARK 3 10 1.7522 - 1.6917 0.99 1460 139 0.2234 0.2638 REMARK 3 11 1.6917 - 1.6388 0.99 1482 148 0.2445 0.3149 REMARK 3 12 1.6388 - 1.5920 0.98 1497 139 0.2512 0.2760 REMARK 3 13 1.5920 - 1.5501 1.00 1457 152 0.2578 0.3219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1315 REMARK 3 ANGLE : 0.937 1792 REMARK 3 CHIRALITY : 0.061 215 REMARK 3 PLANARITY : 0.005 236 REMARK 3 DIHEDRAL : 14.691 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5946 -3.7591 6.4503 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: 0.2510 REMARK 3 T33: 0.2464 T12: 0.0388 REMARK 3 T13: -0.0019 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.2426 L22: 7.8315 REMARK 3 L33: 9.8852 L12: -4.6505 REMARK 3 L13: -4.0344 L23: 5.8166 REMARK 3 S TENSOR REMARK 3 S11: -0.1342 S12: -0.1770 S13: 0.0062 REMARK 3 S21: 0.2818 S22: 0.2426 S23: -0.3285 REMARK 3 S31: 0.8986 S32: 0.3525 S33: -0.2103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9897 -1.9789 8.6484 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.2238 REMARK 3 T33: 0.1834 T12: -0.0266 REMARK 3 T13: 0.0037 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 4.2136 L22: 1.2468 REMARK 3 L33: 3.1912 L12: 0.2085 REMARK 3 L13: 2.3576 L23: -1.3476 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: -0.4812 S13: -0.1070 REMARK 3 S21: 0.3143 S22: 0.2244 S23: -0.0522 REMARK 3 S31: 0.5995 S32: -0.3884 S33: -0.3023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3873 -2.9491 3.2072 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2189 REMARK 3 T33: 0.2393 T12: -0.0739 REMARK 3 T13: -0.0491 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 6.8264 L22: 8.0209 REMARK 3 L33: 4.3600 L12: 0.6622 REMARK 3 L13: -1.3870 L23: -1.0073 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.2792 S13: -0.6420 REMARK 3 S21: -0.0357 S22: -0.0364 S23: 0.5352 REMARK 3 S31: 0.5759 S32: -0.5180 S33: 0.0549 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9980 3.0432 -1.0075 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.1664 REMARK 3 T33: 0.1051 T12: -0.0066 REMARK 3 T13: 0.0178 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 5.2705 L22: 5.4804 REMARK 3 L33: 4.1212 L12: -0.4031 REMARK 3 L13: 2.8557 L23: -0.0372 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.2713 S13: -0.0685 REMARK 3 S21: -0.2201 S22: -0.0611 S23: -0.1283 REMARK 3 S31: 0.0424 S32: 0.2228 S33: 0.0447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0677 6.9438 3.2739 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.4534 REMARK 3 T33: 0.2434 T12: -0.0621 REMARK 3 T13: -0.0106 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.3035 L22: 1.8607 REMARK 3 L33: 0.1395 L12: -1.3271 REMARK 3 L13: 0.3452 L23: -0.5316 REMARK 3 S TENSOR REMARK 3 S11: -0.3218 S12: -0.5122 S13: -0.1197 REMARK 3 S21: 0.0464 S22: 0.2601 S23: 0.4381 REMARK 3 S31: 0.2414 S32: -0.9406 S33: -0.0061 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5398 6.0354 -13.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.3917 REMARK 3 T33: 0.1582 T12: -0.0029 REMARK 3 T13: -0.0093 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.1206 L22: 6.6430 REMARK 3 L33: 5.4244 L12: 1.3172 REMARK 3 L13: 3.0763 L23: 0.3225 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: -0.1660 S13: -0.1904 REMARK 3 S21: 0.5015 S22: 0.0977 S23: -0.2399 REMARK 3 S31: 0.5732 S32: 0.5671 S33: -0.0095 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2207 17.3089 -11.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.2119 REMARK 3 T33: 0.1588 T12: -0.0432 REMARK 3 T13: -0.0097 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 6.1951 L22: 6.3094 REMARK 3 L33: 5.6534 L12: 0.1698 REMARK 3 L13: 3.4621 L23: -0.3590 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: -0.4470 S13: 0.5593 REMARK 3 S21: 0.4557 S22: -0.1423 S23: -0.0450 REMARK 3 S31: -0.5786 S32: 0.0787 S33: 0.3464 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5095 16.0274 -19.4796 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.5253 REMARK 3 T33: 0.2601 T12: -0.1735 REMARK 3 T13: -0.0193 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 7.1803 L22: 5.1084 REMARK 3 L33: 1.4452 L12: 2.2962 REMARK 3 L13: 3.1568 L23: 0.5858 REMARK 3 S TENSOR REMARK 3 S11: -0.5141 S12: 0.7454 S13: 0.3862 REMARK 3 S21: -0.3224 S22: 0.0462 S23: -0.4975 REMARK 3 S31: -0.5423 S32: 1.5037 S33: 0.1269 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8620 14.8710 -19.9717 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.2148 REMARK 3 T33: 0.1703 T12: 0.0120 REMARK 3 T13: -0.0181 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 7.5050 L22: 6.9812 REMARK 3 L33: 6.1810 L12: 0.0724 REMARK 3 L13: 0.6241 L23: 3.4294 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: -0.1333 S13: 0.4657 REMARK 3 S21: -0.2172 S22: -0.1895 S23: 0.4670 REMARK 3 S31: -0.5574 S32: -0.3558 S33: 0.1723 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0863 10.7112 -22.3244 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.3034 REMARK 3 T33: 0.2620 T12: -0.0275 REMARK 3 T13: 0.0084 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.7121 L22: 7.3711 REMARK 3 L33: 3.4860 L12: 3.5212 REMARK 3 L13: -3.4484 L23: -2.8117 REMARK 3 S TENSOR REMARK 3 S11: -0.4731 S12: 0.3755 S13: -0.3301 REMARK 3 S21: -0.0721 S22: 0.2047 S23: -0.9129 REMARK 3 S31: -0.1844 S32: -0.0131 S33: 0.0813 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21353 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 32.608 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.160 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.06 REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5H07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS JCSG+ C3: 200MM REMARK 280 AMMONIUM NITRATE, 20% PEG 3350: NAFOA.19251.A.B1.PS38167 AT 20MG/ REMARK 280 ML: CRYO: 20% EG: TRAY 288541C3: PUCK FIQ0-2., PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 85 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 123.22 -37.65 REMARK 500 GLN A 138 -167.95 -128.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NAFOA.19251.A RELATED DB: TARGETTRACK DBREF 5VIX A 1 152 UNP D2V6G7 D2V6G7_NAEGR 1 152 SEQADV 5VIX MET A -7 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX ALA A -6 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A -5 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A -4 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A -3 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A -2 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A -1 UNP D2V6G7 EXPRESSION TAG SEQADV 5VIX HIS A 0 UNP D2V6G7 EXPRESSION TAG SEQRES 1 A 160 MET ALA HIS HIS HIS HIS HIS HIS MET GLN ILE PHE VAL SEQRES 2 A 160 LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SEQRES 3 A 160 SER ASN ASP THR ILE GLU ASN VAL LYS SER LYS ILE GLN SEQRES 4 A 160 ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE SEQRES 5 A 160 PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER SEQRES 6 A 160 ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL SEQRES 7 A 160 LEU ARG LEU ARG GLY GLY MET GLN ILE PHE VAL LYS THR SEQRES 8 A 160 LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU SER ASN SEQRES 9 A 160 ASP THR ILE GLU ASN VAL LYS SER LYS ILE GLN ASP LYS SEQRES 10 A 160 GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA SEQRES 11 A 160 GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR SEQRES 12 A 160 ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG SEQRES 13 A 160 LEU ARG GLY GLY HET NO3 A 201 4 HET NO3 A 202 4 HET NO3 A 203 4 HETNAM NO3 NITRATE ION FORMUL 2 NO3 3(N O3 1-) FORMUL 5 HOH *167(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR A 98 GLY A 111 1 14 HELIX 5 AA5 PRO A 113 ASP A 115 5 3 HELIX 6 AA6 THR A 131 ASN A 136 5 6 SHEET 1 AA1 5 THR A 12 GLU A 18 0 SHEET 2 AA1 5 HIS A 0 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 69 N LYS A 6 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR A 88 GLU A 92 0 SHEET 2 AA2 5 GLN A 78 THR A 83 -1 N VAL A 81 O ILE A 89 SHEET 3 AA2 5 THR A 142 LEU A 147 1 O LEU A 143 N LYS A 82 SHEET 4 AA2 5 GLN A 117 PHE A 121 -1 N ARG A 118 O VAL A 146 SHEET 5 AA2 5 LYS A 124 GLN A 125 -1 O LYS A 124 N PHE A 121 SITE 1 AC1 8 PHE A 45 SER A 65 ILE A 120 GLY A 123 SITE 2 AC1 8 HIS A 144 HOH A 323 HOH A 356 HOH A 426 SITE 1 AC2 8 THR A 7 LEU A 8 THR A 9 THR A 83 SITE 2 AC2 8 THR A 85 HOH A 354 HOH A 361 HOH A 362 SITE 1 AC3 5 ILE A 44 VAL A 70 ARG A 72 ARG A 148 SITE 2 AC3 5 LEU A 149 CRYST1 34.020 67.710 35.830 90.00 114.49 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029394 0.000000 0.013387 0.00000 SCALE2 0.000000 0.014769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030668 0.00000