data_5VJ9 # _entry.id 5VJ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VJ9 pdb_00005vj9 10.2210/pdb5vj9/pdb WWPDB D_1000227505 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-28 2 'Structure model' 1 1 2017-08-30 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2020-01-01 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_struct_conn_angle 8 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.value' 11 5 'Structure model' '_struct_conn.pdbx_dist_value' 12 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VJ9 _pdbx_database_status.recvd_initial_deposition_date 2017-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5VJB _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Reiss, C.W.' 1 ? 'Strobel, S.A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev RNA _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 1338 _citation.page_last 1343 _citation.title 'Structural basis for ligand binding to the guanidine-II riboswitch.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.061804.117 _citation.pdbx_database_id_PubMed 28600356 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Reiss, C.W.' 1 ? primary 'Strobel, S.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*UP*GP*C)-3') ; 5167.151 4 ? ? ? ? 2 non-polymer syn GUANIDINE 59.070 4 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 5 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 281 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGGGGACGACCCUGC _entity_poly.pdbx_seq_one_letter_code_can GCGGGGACGACCCUGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GUANIDINE GAI 3 SPERMINE SPM 4 'MAGNESIUM ION' MG 5 'POTASSIUM ION' K 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 G n 1 6 G n 1 7 A n 1 8 C n 1 9 G n 1 10 A n 1 11 C n 1 12 C n 1 13 C n 1 14 U n 1 15 G n 1 16 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Pseudomonas aeruginosa' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 287 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GAI non-polymer . GUANIDINE ? 'C H5 N3' 59.070 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 G 6 6 6 G G B . n B 1 7 A 7 7 7 A A B . n B 1 8 C 8 8 8 C C B . n B 1 9 G 9 9 9 G G B . n B 1 10 A 10 10 10 A A B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 G 3 3 3 G G C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 G 6 6 6 G G C . n C 1 7 A 7 7 7 A A C . n C 1 8 C 8 8 8 C C C . n C 1 9 G 9 9 9 G G C . n C 1 10 A 10 10 10 A A C . n C 1 11 C 11 11 11 C C C . n C 1 12 C 12 12 12 C C C . n C 1 13 C 13 13 13 C C C . n C 1 14 U 14 14 14 U U C . n C 1 15 G 15 15 15 G G C . n C 1 16 C 16 16 16 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 G 3 3 3 G G D . n D 1 4 G 4 4 4 G G D . n D 1 5 G 5 5 5 G G D . n D 1 6 G 6 6 6 G G D . n D 1 7 A 7 7 7 A A D . n D 1 8 C 8 8 8 C C D . n D 1 9 G 9 9 9 G G D . n D 1 10 A 10 10 10 A A D . n D 1 11 C 11 11 11 C C D . n D 1 12 C 12 12 12 C C D . n D 1 13 C 13 13 13 C C D . n D 1 14 U 14 14 14 U U D . n D 1 15 G 15 15 15 G G D . n D 1 16 C 16 16 16 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GAI 1 101 3 GAI GAI A . F 3 SPM 1 102 1 SPM SPM A . G 2 GAI 1 101 4 GAI GAI B . H 4 MG 1 102 1 MG MG B . I 3 SPM 1 103 3 SPM SPM B . J 3 SPM 1 104 5 SPM SPM B . K 2 GAI 1 101 2 GAI GAI C . L 3 SPM 1 102 4 SPM SPM C . M 2 GAI 1 101 1 GAI GAI D . N 3 SPM 1 102 2 SPM SPM D . O 5 K 1 103 3 K K D . P 6 HOH 1 201 180 HOH HOH A . P 6 HOH 2 202 241 HOH HOH A . P 6 HOH 3 203 84 HOH HOH A . P 6 HOH 4 204 116 HOH HOH A . P 6 HOH 5 205 61 HOH HOH A . P 6 HOH 6 206 108 HOH HOH A . P 6 HOH 7 207 1 HOH HOH A . P 6 HOH 8 208 123 HOH HOH A . P 6 HOH 9 209 57 HOH HOH A . P 6 HOH 10 210 110 HOH HOH A . P 6 HOH 11 211 280 HOH HOH A . P 6 HOH 12 212 202 HOH HOH A . P 6 HOH 13 213 31 HOH HOH A . P 6 HOH 14 214 23 HOH HOH A . P 6 HOH 15 215 216 HOH HOH A . P 6 HOH 16 216 264 HOH HOH A . P 6 HOH 17 217 218 HOH HOH A . P 6 HOH 18 218 261 HOH HOH A . P 6 HOH 19 219 208 HOH HOH A . P 6 HOH 20 220 145 HOH HOH A . P 6 HOH 21 221 214 HOH HOH A . P 6 HOH 22 222 245 HOH HOH A . P 6 HOH 23 223 188 HOH HOH A . P 6 HOH 24 224 228 HOH HOH A . P 6 HOH 25 225 275 HOH HOH A . P 6 HOH 26 226 159 HOH HOH A . P 6 HOH 27 227 255 HOH HOH A . P 6 HOH 28 228 121 HOH HOH A . P 6 HOH 29 229 242 HOH HOH A . P 6 HOH 30 230 109 HOH HOH A . P 6 HOH 31 231 224 HOH HOH A . P 6 HOH 32 232 35 HOH HOH A . P 6 HOH 33 233 72 HOH HOH A . P 6 HOH 34 234 30 HOH HOH A . P 6 HOH 35 235 168 HOH HOH A . P 6 HOH 36 236 205 HOH HOH A . P 6 HOH 37 237 78 HOH HOH A . P 6 HOH 38 238 52 HOH HOH A . P 6 HOH 39 239 268 HOH HOH A . P 6 HOH 40 240 282 HOH HOH A . P 6 HOH 41 241 54 HOH HOH A . P 6 HOH 42 242 239 HOH HOH A . P 6 HOH 43 243 276 HOH HOH A . P 6 HOH 44 244 281 HOH HOH A . P 6 HOH 45 245 252 HOH HOH A . P 6 HOH 46 246 167 HOH HOH A . P 6 HOH 47 247 179 HOH HOH A . P 6 HOH 48 248 209 HOH HOH A . P 6 HOH 49 249 226 HOH HOH A . P 6 HOH 50 250 277 HOH HOH A . P 6 HOH 51 251 170 HOH HOH A . P 6 HOH 52 252 198 HOH HOH A . P 6 HOH 53 253 160 HOH HOH A . P 6 HOH 54 254 140 HOH HOH A . P 6 HOH 55 255 173 HOH HOH A . P 6 HOH 56 256 177 HOH HOH A . Q 6 HOH 1 201 254 HOH HOH B . Q 6 HOH 2 202 4 HOH HOH B . Q 6 HOH 3 203 75 HOH HOH B . Q 6 HOH 4 204 237 HOH HOH B . Q 6 HOH 5 205 262 HOH HOH B . Q 6 HOH 6 206 92 HOH HOH B . Q 6 HOH 7 207 47 HOH HOH B . Q 6 HOH 8 208 114 HOH HOH B . Q 6 HOH 9 209 156 HOH HOH B . Q 6 HOH 10 210 106 HOH HOH B . Q 6 HOH 11 211 80 HOH HOH B . Q 6 HOH 12 212 172 HOH HOH B . Q 6 HOH 13 213 135 HOH HOH B . Q 6 HOH 14 214 7 HOH HOH B . Q 6 HOH 15 215 3 HOH HOH B . Q 6 HOH 16 216 144 HOH HOH B . Q 6 HOH 17 217 32 HOH HOH B . Q 6 HOH 18 218 25 HOH HOH B . Q 6 HOH 19 219 63 HOH HOH B . Q 6 HOH 20 220 9 HOH HOH B . Q 6 HOH 21 221 36 HOH HOH B . Q 6 HOH 22 222 195 HOH HOH B . Q 6 HOH 23 223 182 HOH HOH B . Q 6 HOH 24 224 43 HOH HOH B . Q 6 HOH 25 225 56 HOH HOH B . Q 6 HOH 26 226 136 HOH HOH B . Q 6 HOH 27 227 42 HOH HOH B . Q 6 HOH 28 228 6 HOH HOH B . Q 6 HOH 29 229 19 HOH HOH B . Q 6 HOH 30 230 128 HOH HOH B . Q 6 HOH 31 231 189 HOH HOH B . Q 6 HOH 32 232 87 HOH HOH B . Q 6 HOH 33 233 99 HOH HOH B . Q 6 HOH 34 234 26 HOH HOH B . Q 6 HOH 35 235 192 HOH HOH B . Q 6 HOH 36 236 33 HOH HOH B . Q 6 HOH 37 237 200 HOH HOH B . Q 6 HOH 38 238 100 HOH HOH B . Q 6 HOH 39 239 12 HOH HOH B . Q 6 HOH 40 240 138 HOH HOH B . Q 6 HOH 41 241 230 HOH HOH B . Q 6 HOH 42 242 102 HOH HOH B . Q 6 HOH 43 243 101 HOH HOH B . Q 6 HOH 44 244 73 HOH HOH B . Q 6 HOH 45 245 98 HOH HOH B . Q 6 HOH 46 246 62 HOH HOH B . Q 6 HOH 47 247 263 HOH HOH B . Q 6 HOH 48 248 118 HOH HOH B . Q 6 HOH 49 249 24 HOH HOH B . Q 6 HOH 50 250 44 HOH HOH B . Q 6 HOH 51 251 190 HOH HOH B . Q 6 HOH 52 252 107 HOH HOH B . Q 6 HOH 53 253 111 HOH HOH B . Q 6 HOH 54 254 191 HOH HOH B . Q 6 HOH 55 255 154 HOH HOH B . Q 6 HOH 56 256 217 HOH HOH B . Q 6 HOH 57 257 223 HOH HOH B . Q 6 HOH 58 258 5 HOH HOH B . Q 6 HOH 59 259 278 HOH HOH B . Q 6 HOH 60 260 221 HOH HOH B . Q 6 HOH 61 261 187 HOH HOH B . Q 6 HOH 62 262 40 HOH HOH B . Q 6 HOH 63 263 16 HOH HOH B . Q 6 HOH 64 264 133 HOH HOH B . Q 6 HOH 65 265 127 HOH HOH B . Q 6 HOH 66 266 203 HOH HOH B . Q 6 HOH 67 267 251 HOH HOH B . Q 6 HOH 68 268 10 HOH HOH B . Q 6 HOH 69 269 227 HOH HOH B . Q 6 HOH 70 270 8 HOH HOH B . Q 6 HOH 71 271 248 HOH HOH B . Q 6 HOH 72 272 53 HOH HOH B . Q 6 HOH 73 273 272 HOH HOH B . Q 6 HOH 74 274 206 HOH HOH B . Q 6 HOH 75 275 147 HOH HOH B . Q 6 HOH 76 276 204 HOH HOH B . Q 6 HOH 77 277 175 HOH HOH B . Q 6 HOH 78 278 132 HOH HOH B . Q 6 HOH 79 279 129 HOH HOH B . Q 6 HOH 80 280 233 HOH HOH B . Q 6 HOH 81 281 65 HOH HOH B . Q 6 HOH 82 282 270 HOH HOH B . Q 6 HOH 83 283 219 HOH HOH B . R 6 HOH 1 201 249 HOH HOH C . R 6 HOH 2 202 122 HOH HOH C . R 6 HOH 3 203 27 HOH HOH C . R 6 HOH 4 204 269 HOH HOH C . R 6 HOH 5 205 181 HOH HOH C . R 6 HOH 6 206 113 HOH HOH C . R 6 HOH 7 207 137 HOH HOH C . R 6 HOH 8 208 49 HOH HOH C . R 6 HOH 9 209 165 HOH HOH C . R 6 HOH 10 210 88 HOH HOH C . R 6 HOH 11 211 66 HOH HOH C . R 6 HOH 12 212 89 HOH HOH C . R 6 HOH 13 213 96 HOH HOH C . R 6 HOH 14 214 149 HOH HOH C . R 6 HOH 15 215 70 HOH HOH C . R 6 HOH 16 216 139 HOH HOH C . R 6 HOH 17 217 163 HOH HOH C . R 6 HOH 18 218 134 HOH HOH C . R 6 HOH 19 219 265 HOH HOH C . R 6 HOH 20 220 194 HOH HOH C . R 6 HOH 21 221 55 HOH HOH C . R 6 HOH 22 222 50 HOH HOH C . R 6 HOH 23 223 79 HOH HOH C . R 6 HOH 24 224 176 HOH HOH C . R 6 HOH 25 225 119 HOH HOH C . R 6 HOH 26 226 76 HOH HOH C . R 6 HOH 27 227 126 HOH HOH C . R 6 HOH 28 228 85 HOH HOH C . R 6 HOH 29 229 201 HOH HOH C . R 6 HOH 30 230 91 HOH HOH C . R 6 HOH 31 231 74 HOH HOH C . R 6 HOH 32 232 60 HOH HOH C . R 6 HOH 33 233 125 HOH HOH C . R 6 HOH 34 234 81 HOH HOH C . R 6 HOH 35 235 225 HOH HOH C . R 6 HOH 36 236 274 HOH HOH C . R 6 HOH 37 237 260 HOH HOH C . R 6 HOH 38 238 197 HOH HOH C . R 6 HOH 39 239 22 HOH HOH C . R 6 HOH 40 240 130 HOH HOH C . R 6 HOH 41 241 155 HOH HOH C . R 6 HOH 42 242 213 HOH HOH C . R 6 HOH 43 243 279 HOH HOH C . R 6 HOH 44 244 164 HOH HOH C . R 6 HOH 45 245 68 HOH HOH C . R 6 HOH 46 246 196 HOH HOH C . R 6 HOH 47 247 14 HOH HOH C . R 6 HOH 48 248 232 HOH HOH C . R 6 HOH 49 249 174 HOH HOH C . R 6 HOH 50 250 77 HOH HOH C . R 6 HOH 51 251 18 HOH HOH C . R 6 HOH 52 252 146 HOH HOH C . R 6 HOH 53 253 247 HOH HOH C . R 6 HOH 54 254 152 HOH HOH C . R 6 HOH 55 255 178 HOH HOH C . R 6 HOH 56 256 157 HOH HOH C . R 6 HOH 57 257 183 HOH HOH C . R 6 HOH 58 258 166 HOH HOH C . R 6 HOH 59 259 236 HOH HOH C . R 6 HOH 60 260 69 HOH HOH C . R 6 HOH 61 261 169 HOH HOH C . R 6 HOH 62 262 97 HOH HOH C . R 6 HOH 63 263 184 HOH HOH C . R 6 HOH 64 264 185 HOH HOH C . S 6 HOH 1 201 253 HOH HOH D . S 6 HOH 2 202 283 HOH HOH D . S 6 HOH 3 203 104 HOH HOH D . S 6 HOH 4 204 131 HOH HOH D . S 6 HOH 5 205 211 HOH HOH D . S 6 HOH 6 206 207 HOH HOH D . S 6 HOH 7 207 186 HOH HOH D . S 6 HOH 8 208 238 HOH HOH D . S 6 HOH 9 209 51 HOH HOH D . S 6 HOH 10 210 95 HOH HOH D . S 6 HOH 11 211 259 HOH HOH D . S 6 HOH 12 212 162 HOH HOH D . S 6 HOH 13 213 103 HOH HOH D . S 6 HOH 14 214 15 HOH HOH D . S 6 HOH 15 215 34 HOH HOH D . S 6 HOH 16 216 115 HOH HOH D . S 6 HOH 17 217 256 HOH HOH D . S 6 HOH 18 218 17 HOH HOH D . S 6 HOH 19 219 93 HOH HOH D . S 6 HOH 20 220 117 HOH HOH D . S 6 HOH 21 221 243 HOH HOH D . S 6 HOH 22 222 193 HOH HOH D . S 6 HOH 23 223 120 HOH HOH D . S 6 HOH 24 224 38 HOH HOH D . S 6 HOH 25 225 86 HOH HOH D . S 6 HOH 26 226 220 HOH HOH D . S 6 HOH 27 227 48 HOH HOH D . S 6 HOH 28 228 124 HOH HOH D . S 6 HOH 29 229 41 HOH HOH D . S 6 HOH 30 230 2 HOH HOH D . S 6 HOH 31 231 158 HOH HOH D . S 6 HOH 32 232 142 HOH HOH D . S 6 HOH 33 233 39 HOH HOH D . S 6 HOH 34 234 240 HOH HOH D . S 6 HOH 35 235 83 HOH HOH D . S 6 HOH 36 236 244 HOH HOH D . S 6 HOH 37 237 45 HOH HOH D . S 6 HOH 38 238 143 HOH HOH D . S 6 HOH 39 239 150 HOH HOH D . S 6 HOH 40 240 37 HOH HOH D . S 6 HOH 41 241 90 HOH HOH D . S 6 HOH 42 242 29 HOH HOH D . S 6 HOH 43 243 234 HOH HOH D . S 6 HOH 44 244 13 HOH HOH D . S 6 HOH 45 245 21 HOH HOH D . S 6 HOH 46 246 112 HOH HOH D . S 6 HOH 47 247 161 HOH HOH D . S 6 HOH 48 248 20 HOH HOH D . S 6 HOH 49 249 46 HOH HOH D . S 6 HOH 50 250 58 HOH HOH D . S 6 HOH 51 251 222 HOH HOH D . S 6 HOH 52 252 82 HOH HOH D . S 6 HOH 53 253 59 HOH HOH D . S 6 HOH 54 254 199 HOH HOH D . S 6 HOH 55 255 71 HOH HOH D . S 6 HOH 56 256 11 HOH HOH D . S 6 HOH 57 257 151 HOH HOH D . S 6 HOH 58 258 215 HOH HOH D . S 6 HOH 59 259 273 HOH HOH D . S 6 HOH 60 260 267 HOH HOH D . S 6 HOH 61 261 229 HOH HOH D . S 6 HOH 62 262 67 HOH HOH D . S 6 HOH 63 263 171 HOH HOH D . S 6 HOH 64 264 148 HOH HOH D . S 6 HOH 65 265 258 HOH HOH D . S 6 HOH 66 266 212 HOH HOH D . S 6 HOH 67 267 141 HOH HOH D . S 6 HOH 68 268 105 HOH HOH D . S 6 HOH 69 269 257 HOH HOH D . S 6 HOH 70 270 153 HOH HOH D . S 6 HOH 71 271 250 HOH HOH D . S 6 HOH 72 272 266 HOH HOH D . S 6 HOH 73 273 271 HOH HOH D . S 6 HOH 74 274 210 HOH HOH D . S 6 HOH 75 275 64 HOH HOH D . S 6 HOH 76 276 235 HOH HOH D . S 6 HOH 77 277 246 HOH HOH D . S 6 HOH 78 278 94 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B SPM 103 ? N1 ? I SPM 1 N1 2 1 N 1 B SPM 103 ? C2 ? I SPM 1 C2 3 1 N 1 B SPM 103 ? C3 ? I SPM 1 C3 4 1 N 1 B SPM 103 ? C4 ? I SPM 1 C4 5 1 N 1 B SPM 104 ? N1 ? J SPM 1 N1 6 1 N 1 B SPM 104 ? C2 ? J SPM 1 C2 7 1 N 1 B SPM 104 ? C3 ? J SPM 1 C3 8 1 N 1 B SPM 104 ? C4 ? J SPM 1 C4 9 1 N 1 B SPM 104 ? N5 ? J SPM 1 N5 10 1 N 1 B SPM 104 ? C6 ? J SPM 1 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 5 # _cell.length_a 50.252 _cell.length_b 60.664 _cell.length_c 72.308 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5VJ9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 5VJ9 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VJ9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.67 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.87 _exptl_crystal.description 'Crystals grew as rectangular prisms' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method MICROBATCH _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40% MPD, 50 mM Na-acetate, pH 5.0, 12 mM NaCl, 80 mM KCl, and 12 mM spermine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-04-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9193 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9193 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 5VJ9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 1.570 _reflns.number_obs 31438 _reflns.number_all ? _reflns.percent_possible_obs 99.800 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.500 _reflns.pdbx_Rrim_I_all 0.055 _reflns.pdbx_Rpim_I_all 0.016 _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 361260 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared 0.977 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.570 1.600 ? ? ? ? 1.016 ? ? 1.052 6.900 ? ? ? 1514 ? ? ? ? 98.800 1.097 0.402 0.565 1 2 1.600 1.630 ? ? ? ? 0.955 ? ? 1.057 8.000 ? ? ? 1535 ? ? ? ? 98.800 1.021 0.351 0.728 1 3 1.630 1.660 ? ? ? ? 0.767 ? ? 1.005 9.300 ? ? ? 1544 ? ? ? ? 99.800 0.812 0.261 0.878 1 4 1.660 1.690 ? ? ? ? 0.688 ? ? 0.991 11.500 ? ? ? 1551 ? ? ? ? 99.900 0.720 0.210 0.917 1 5 1.690 1.730 ? ? ? ? 0.618 ? ? 0.972 12.400 ? ? ? 1543 ? ? ? ? 100.000 0.644 0.181 0.939 1 6 1.730 1.770 ? ? ? ? 0.612 ? ? 0.913 12.400 ? ? ? 1542 ? ? ? ? 100.000 0.639 0.180 0.890 1 7 1.770 1.810 ? ? ? ? 0.536 ? ? 0.887 12.400 ? ? ? 1568 ? ? ? ? 99.900 0.560 0.158 0.908 1 8 1.810 1.860 ? ? ? ? 0.476 ? ? 0.873 12.100 ? ? ? 1560 ? ? ? ? 99.900 0.497 0.142 0.921 1 9 1.860 1.920 ? ? ? ? 0.371 ? ? 0.856 11.000 ? ? ? 1556 ? ? ? ? 99.900 0.389 0.116 0.945 1 10 1.920 1.980 ? ? ? ? 0.311 ? ? 0.822 12.100 ? ? ? 1547 ? ? ? ? 100.000 0.324 0.092 0.971 1 11 1.980 2.050 ? ? ? ? 0.227 ? ? 0.816 12.700 ? ? ? 1566 ? ? ? ? 99.900 0.236 0.066 0.988 1 12 2.050 2.130 ? ? ? ? 0.181 ? ? 0.837 12.500 ? ? ? 1567 ? ? ? ? 100.000 0.189 0.053 0.991 1 13 2.130 2.230 ? ? ? ? 0.138 ? ? 0.821 12.300 ? ? ? 1553 ? ? ? ? 99.800 0.144 0.041 0.994 1 14 2.230 2.350 ? ? ? ? 0.105 ? ? 0.866 10.900 ? ? ? 1590 ? ? ? ? 99.800 0.110 0.033 0.996 1 15 2.350 2.490 ? ? ? ? 0.081 ? ? 0.869 12.800 ? ? ? 1576 ? ? ? ? 100.000 0.084 0.023 0.998 1 16 2.490 2.680 ? ? ? ? 0.067 ? ? 0.930 12.700 ? ? ? 1583 ? ? ? ? 100.000 0.069 0.019 0.998 1 17 2.680 2.950 ? ? ? ? 0.046 ? ? 1.018 12.000 ? ? ? 1591 ? ? ? ? 99.800 0.048 0.014 1.000 1 18 2.950 3.380 ? ? ? ? 0.034 ? ? 1.268 12.100 ? ? ? 1602 ? ? ? ? 99.800 0.036 0.010 1.000 1 19 3.380 4.260 ? ? ? ? 0.031 ? ? 1.405 12.200 ? ? ? 1627 ? ? ? ? 99.900 0.033 0.009 1.000 1 20 4.260 40.000 ? ? ? ? 0.031 ? ? 1.322 11.200 ? ? ? 1723 ? ? ? ? 99.500 0.033 0.010 0.999 # _refine.entry_id 5VJ9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.5700 _refine.ls_d_res_low 40.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_number_reflns_obs 29890 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1943 _refine.ls_R_factor_R_work 0.1924 _refine.ls_wR_factor_R_work 0.1891 _refine.ls_R_factor_R_free 0.2344 _refine.ls_wR_factor_R_free 0.2322 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 1495 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 30.6040 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0100 _refine.aniso_B[2][2] -1.0000 _refine.aniso_B[3][3] 1.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9740 _refine.correlation_coeff_Fo_to_Fc_free 0.9660 _refine.overall_SU_R_Cruickshank_DPI 0.0843 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.0901 _refine.pdbx_overall_ESU_R 0.0840 _refine.pdbx_overall_ESU_R_Free 0.0900 _refine.overall_SU_ML 0.0750 _refine.overall_SU_B 2.2520 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7925 _refine.B_iso_max 78.270 _refine.B_iso_min 19.390 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5700 _refine_hist.d_res_low 40.0000 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 281 _refine_hist.number_atoms_total 1727 _refine_hist.pdbx_number_residues_total 64 _refine_hist.pdbx_B_iso_mean_ligand 44.96 _refine_hist.pdbx_B_iso_mean_solvent 43.10 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1368 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1595 0.013 0.011 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 770 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2442 1.845 1.303 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1816 1.711 3.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 256 0.084 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 820 0.019 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 400 0.003 0.020 ? ? # _refine_ls_shell.d_res_high 1.5710 _refine_ls_shell.d_res_low 1.6120 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.7900 _refine_ls_shell.number_reflns_R_work 2095 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3990 _refine_ls_shell.R_factor_R_free 0.4170 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 2203 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5VJ9 _struct.title 'Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VJ9 _struct_keywords.text 'Kissing stem-loop, hairpin, dimer, guanidine, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 3 ? J N N 3 ? K N N 2 ? L N N 3 ? M N N 2 ? N N N 3 ? O N N 5 ? P N N 6 ? Q N N 6 ? R N N 6 ? S N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5VJ9 _struct_ref.pdbx_db_accession 5VJ9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5VJ9 A 1 ? 16 ? 5VJ9 1 ? 16 ? 1 16 2 1 5VJ9 B 1 ? 16 ? 5VJ9 1 ? 16 ? 1 16 3 1 5VJ9 C 1 ? 16 ? 5VJ9 1 ? 16 ? 1 16 4 1 5VJ9 D 1 ? 16 ? 5VJ9 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,P,Q 2 1 C,D,K,L,M,N,O,R,S # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B C 8 OP1 ? ? ? 1_555 H MG . MG ? ? B C 8 B MG 102 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc2 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 202 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc3 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 215 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 228 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 251 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc6 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 258 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc7 metalc ? ? H MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 102 B HOH 269 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc8 metalc ? ? D G 3 O6 ? ? ? 1_555 O K . K ? ? D G 3 D K 103 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc9 metalc ? ? D G 4 O6 ? ? ? 1_555 O K . K ? ? D G 4 D K 103 1_555 ? ? ? ? ? ? ? 3.165 ? ? metalc10 metalc ? ? D U 14 O4 ? ? ? 1_555 O K . K ? ? D U 14 D K 103 1_555 ? ? ? ? ? ? ? 3.055 ? ? metalc11 metalc ? ? O K . K ? ? ? 1_555 S HOH . O ? ? D K 103 D HOH 233 1_555 ? ? ? ? ? ? ? 2.538 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 1 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 2 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 2 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 2 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A U 14 O2 ? ? A G 3 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A U 14 N3 ? ? A G 3 A U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 4 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 4 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 4 A C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 12 N3 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 12 O2 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 5 A C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 6 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 6 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 6 A C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 B C 11 O2 ? ? A A 7 B C 11 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 9 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 9 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 9 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 O2 ? ? ? 1_555 B A 7 N6 ? ? A C 11 B A 7 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog26 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 15 N1 ? ? B C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 15 O6 ? ? B C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 15 N2 ? ? B C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 3 N1 ? ? ? 1_555 B U 14 O2 ? ? B G 3 B U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? B G 3 O6 ? ? ? 1_555 B U 14 N3 ? ? B G 3 B U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? B G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? B G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? B G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 12 N3 ? ? B G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 12 O2 ? ? B G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 12 N4 ? ? B G 5 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 11 N3 ? ? B G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 11 O2 ? ? B G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 11 N4 ? ? B G 6 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 16 N3 ? ? C G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 16 O2 ? ? C G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 16 N4 ? ? C G 1 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 15 N1 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 15 O6 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 15 N2 ? ? C C 2 C G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 3 N1 ? ? ? 1_555 C U 14 O2 ? ? C G 3 C U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? C G 3 O6 ? ? ? 1_555 C U 14 N3 ? ? C G 3 C U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 13 N3 ? ? C G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 13 O2 ? ? C G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 13 N4 ? ? C G 4 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 12 N3 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 12 O2 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 12 N4 ? ? C G 5 C C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 6 N1 ? ? ? 1_555 C C 11 N3 ? ? C G 6 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 6 N2 ? ? ? 1_555 C C 11 O2 ? ? C G 6 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 6 O6 ? ? ? 1_555 C C 11 N4 ? ? C G 6 C C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C A 7 N6 ? ? ? 1_555 D C 11 O2 ? ? C A 7 D C 11 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog61 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 9 N1 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 9 O6 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 9 N2 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 9 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 9 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 9 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 9 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C G 9 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 9 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 11 O2 ? ? ? 1_555 D A 7 N6 ? ? C C 11 D A 7 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog68 hydrog ? ? D G 1 N1 ? ? ? 1_555 D C 16 N3 ? ? D G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? D G 1 N2 ? ? ? 1_555 D C 16 O2 ? ? D G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? D G 1 O6 ? ? ? 1_555 D C 16 N4 ? ? D G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? D C 2 N3 ? ? ? 1_555 D G 15 N1 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? D C 2 N4 ? ? ? 1_555 D G 15 O6 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? D C 2 O2 ? ? ? 1_555 D G 15 N2 ? ? D C 2 D G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? D G 3 N1 ? ? ? 1_555 D U 14 O2 ? ? D G 3 D U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? D G 3 O6 ? ? ? 1_555 D U 14 N3 ? ? D G 3 D U 14 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? D G 4 N1 ? ? ? 1_555 D C 13 N3 ? ? D G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? D G 4 N2 ? ? ? 1_555 D C 13 O2 ? ? D G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? D G 4 O6 ? ? ? 1_555 D C 13 N4 ? ? D G 4 D C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 12 N3 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 12 O2 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 12 N4 ? ? D G 5 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? D G 6 N1 ? ? ? 1_555 D C 11 N3 ? ? D G 6 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? D G 6 N2 ? ? ? 1_555 D C 11 O2 ? ? D G 6 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? D G 6 O6 ? ? ? 1_555 D C 11 N4 ? ? D G 6 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 202 ? 1_555 100.0 ? 2 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 215 ? 1_555 102.3 ? 3 O ? Q HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 215 ? 1_555 92.9 ? 4 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 228 ? 1_555 161.7 ? 5 O ? Q HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 228 ? 1_555 95.1 ? 6 O ? Q HOH . ? B HOH 215 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 228 ? 1_555 87.0 ? 7 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 251 ? 1_555 81.8 ? 8 O ? Q HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 251 ? 1_555 172.4 ? 9 O ? Q HOH . ? B HOH 215 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 251 ? 1_555 79.5 ? 10 O ? Q HOH . ? B HOH 228 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 251 ? 1_555 84.5 ? 11 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 258 ? 1_555 81.8 ? 12 O ? Q HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 258 ? 1_555 85.6 ? 13 O ? Q HOH . ? B HOH 215 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 258 ? 1_555 175.8 ? 14 O ? Q HOH . ? B HOH 228 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 258 ? 1_555 89.2 ? 15 O ? Q HOH . ? B HOH 251 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 258 ? 1_555 102.0 ? 16 OP1 ? B C 8 ? B C 8 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 126.6 ? 17 O ? Q HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 124.9 ? 18 O ? Q HOH . ? B HOH 215 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 53.6 ? 19 O ? Q HOH . ? B HOH 228 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 48.1 ? 20 O ? Q HOH . ? B HOH 251 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 50.0 ? 21 O ? Q HOH . ? B HOH 258 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? Q HOH . ? B HOH 269 ? 1_555 124.5 ? 22 O6 ? D G 3 ? D G 3 ? 1_555 K ? O K . ? D K 103 ? 1_555 O6 ? D G 4 ? D G 4 ? 1_555 67.2 ? 23 O6 ? D G 3 ? D G 3 ? 1_555 K ? O K . ? D K 103 ? 1_555 O4 ? D U 14 ? D U 14 ? 1_555 77.7 ? 24 O6 ? D G 4 ? D G 4 ? 1_555 K ? O K . ? D K 103 ? 1_555 O4 ? D U 14 ? D U 14 ? 1_555 85.3 ? 25 O6 ? D G 3 ? D G 3 ? 1_555 K ? O K . ? D K 103 ? 1_555 O ? S HOH . ? D HOH 233 ? 1_555 92.0 ? 26 O6 ? D G 4 ? D G 4 ? 1_555 K ? O K . ? D K 103 ? 1_555 O ? S HOH . ? D HOH 233 ? 1_555 95.2 ? 27 O4 ? D U 14 ? D U 14 ? 1_555 K ? O K . ? D K 103 ? 1_555 O ? S HOH . ? D HOH 233 ? 1_555 168.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GAI 101 ? 4 'binding site for residue GAI A 101' AC2 Software A SPM 102 ? 12 'binding site for residue SPM A 102' AC3 Software B GAI 101 ? 4 'binding site for residue GAI B 101' AC4 Software B MG 102 ? 7 'binding site for residue MG B 102' AC5 Software B SPM 103 ? 6 'binding site for residue SPM B 103' AC6 Software B SPM 104 ? 9 'binding site for residue SPM B 104' AC7 Software C GAI 101 ? 5 'binding site for residue GAI C 101' AC8 Software C SPM 102 ? 9 'binding site for residue SPM C 102' AC9 Software D GAI 101 ? 5 'binding site for residue GAI D 101' AD1 Software D SPM 102 ? 10 'binding site for residue SPM D 102' AD2 Software D K 103 ? 5 'binding site for residue K D 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 6 ? G A 6 . ? 1_555 ? 2 AC1 4 A A 7 ? A A 7 . ? 1_555 ? 3 AC1 4 C A 8 ? C A 8 . ? 1_555 ? 4 AC1 4 G A 9 ? G A 9 . ? 1_555 ? 5 AC2 12 G A 5 ? G A 5 . ? 1_555 ? 6 AC2 12 G A 6 ? G A 6 . ? 1_555 ? 7 AC2 12 A A 7 ? A A 7 . ? 1_555 ? 8 AC2 12 C A 8 ? C A 8 . ? 1_555 ? 9 AC2 12 G A 9 ? G A 9 . ? 1_555 ? 10 AC2 12 A A 10 ? A A 10 . ? 1_555 ? 11 AC2 12 HOH P . ? HOH A 202 . ? 1_555 ? 12 AC2 12 HOH P . ? HOH A 207 . ? 1_555 ? 13 AC2 12 HOH P . ? HOH A 231 . ? 1_555 ? 14 AC2 12 HOH P . ? HOH A 244 . ? 1_555 ? 15 AC2 12 G C 15 ? G C 15 . ? 3_553 ? 16 AC2 12 C C 16 ? C C 16 . ? 3_553 ? 17 AC3 4 G B 6 ? G B 6 . ? 1_555 ? 18 AC3 4 A B 7 ? A B 7 . ? 1_555 ? 19 AC3 4 C B 8 ? C B 8 . ? 1_555 ? 20 AC3 4 G B 9 ? G B 9 . ? 1_555 ? 21 AC4 7 C B 8 ? C B 8 . ? 1_555 ? 22 AC4 7 HOH Q . ? HOH B 202 . ? 1_555 ? 23 AC4 7 HOH Q . ? HOH B 215 . ? 1_555 ? 24 AC4 7 HOH Q . ? HOH B 228 . ? 1_555 ? 25 AC4 7 HOH Q . ? HOH B 251 . ? 1_555 ? 26 AC4 7 HOH Q . ? HOH B 258 . ? 1_555 ? 27 AC4 7 HOH Q . ? HOH B 269 . ? 1_555 ? 28 AC5 6 G B 3 ? G B 3 . ? 1_555 ? 29 AC5 6 G B 4 ? G B 4 . ? 1_555 ? 30 AC5 6 U B 14 ? U B 14 . ? 1_555 ? 31 AC5 6 HOH Q . ? HOH B 205 . ? 1_555 ? 32 AC5 6 HOH Q . ? HOH B 255 . ? 1_555 ? 33 AC5 6 HOH Q . ? HOH B 271 . ? 1_555 ? 34 AC6 9 G B 5 ? G B 5 . ? 1_555 ? 35 AC6 9 G B 6 ? G B 6 . ? 1_555 ? 36 AC6 9 G B 9 ? G B 9 . ? 1_555 ? 37 AC6 9 A B 10 ? A B 10 . ? 1_555 ? 38 AC6 9 HOH Q . ? HOH B 215 . ? 1_555 ? 39 AC6 9 HOH Q . ? HOH B 232 . ? 1_555 ? 40 AC6 9 HOH Q . ? HOH B 233 . ? 1_555 ? 41 AC6 9 HOH Q . ? HOH B 268 . ? 1_555 ? 42 AC6 9 HOH Q . ? HOH B 269 . ? 1_555 ? 43 AC7 5 G C 6 ? G C 6 . ? 1_555 ? 44 AC7 5 A C 7 ? A C 7 . ? 1_555 ? 45 AC7 5 C C 8 ? C C 8 . ? 1_555 ? 46 AC7 5 G C 9 ? G C 9 . ? 1_555 ? 47 AC7 5 HOH R . ? HOH C 215 . ? 1_555 ? 48 AC8 9 G A 15 ? G A 15 . ? 3_543 ? 49 AC8 9 C A 16 ? C A 16 . ? 3_543 ? 50 AC8 9 C B 11 ? C B 11 . ? 2_474 ? 51 AC8 9 G C 5 ? G C 5 . ? 1_555 ? 52 AC8 9 G C 6 ? G C 6 . ? 1_555 ? 53 AC8 9 C C 8 ? C C 8 . ? 1_555 ? 54 AC8 9 G C 9 ? G C 9 . ? 1_555 ? 55 AC8 9 HOH R . ? HOH C 202 . ? 1_555 ? 56 AC8 9 HOH R . ? HOH C 210 . ? 1_555 ? 57 AC9 5 G D 6 ? G D 6 . ? 1_555 ? 58 AC9 5 A D 7 ? A D 7 . ? 1_555 ? 59 AC9 5 C D 8 ? C D 8 . ? 1_555 ? 60 AC9 5 G D 9 ? G D 9 . ? 1_555 ? 61 AC9 5 HOH S . ? HOH D 229 . ? 1_555 ? 62 AD1 10 G B 4 ? G B 4 . ? 4_464 ? 63 AD1 10 G B 5 ? G B 5 . ? 4_464 ? 64 AD1 10 G D 5 ? G D 5 . ? 1_555 ? 65 AD1 10 G D 6 ? G D 6 . ? 1_555 ? 66 AD1 10 A D 7 ? A D 7 . ? 1_555 ? 67 AD1 10 C D 8 ? C D 8 . ? 1_555 ? 68 AD1 10 G D 9 ? G D 9 . ? 1_555 ? 69 AD1 10 HOH S . ? HOH D 214 . ? 1_555 ? 70 AD1 10 HOH S . ? HOH D 219 . ? 1_555 ? 71 AD1 10 HOH S . ? HOH D 265 . ? 1_555 ? 72 AD2 5 C D 2 ? C D 2 . ? 1_555 ? 73 AD2 5 G D 3 ? G D 3 . ? 1_555 ? 74 AD2 5 G D 4 ? G D 4 . ? 1_555 ? 75 AD2 5 U D 14 ? U D 14 . ? 1_555 ? 76 AD2 5 HOH S . ? HOH D 233 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 3 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A G 3 ? ? P A G 4 ? ? 1.535 1.607 -0.072 0.012 Y 2 1 "O3'" C A 10 ? ? P C C 11 ? ? 1.534 1.607 -0.073 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B G 3 ? ? P B G 3 ? ? OP2 B G 3 ? ? 98.12 105.70 -7.58 0.90 N 2 1 "O5'" B A 7 ? ? P B A 7 ? ? OP1 B A 7 ? ? 99.76 105.70 -5.94 0.90 N 3 1 "O5'" C G 3 ? ? P C G 3 ? ? OP2 C G 3 ? ? 96.67 105.70 -9.03 0.90 N 4 1 "O5'" D C 16 ? ? P D C 16 ? ? OP2 D C 16 ? ? 97.11 105.70 -8.59 0.90 N # _pdbx_phasing_MR.entry_id 5VJ9 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 5.370 _pdbx_phasing_MR.d_res_low_rotation 34.120 _pdbx_phasing_MR.d_res_high_translation 5.370 _pdbx_phasing_MR.d_res_low_translation 34.120 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GAI C C N N 111 GAI N1 N N N 112 GAI N2 N N N 113 GAI N3 N N N 114 GAI HN1 H N N 115 GAI HN21 H N N 116 GAI HN22 H N N 117 GAI HN31 H N N 118 GAI HN32 H N N 119 HOH O O N N 120 HOH H1 H N N 121 HOH H2 H N N 122 K K K N N 123 MG MG MG N N 124 SPM N1 N N N 125 SPM C2 C N N 126 SPM C3 C N N 127 SPM C4 C N N 128 SPM N5 N N N 129 SPM C6 C N N 130 SPM C7 C N N 131 SPM C8 C N N 132 SPM C9 C N N 133 SPM N10 N N N 134 SPM C11 C N N 135 SPM C12 C N N 136 SPM C13 C N N 137 SPM N14 N N N 138 SPM HN11 H N N 139 SPM HN12 H N N 140 SPM H21 H N N 141 SPM H22 H N N 142 SPM H31 H N N 143 SPM H32 H N N 144 SPM H41 H N N 145 SPM H42 H N N 146 SPM HN5 H N N 147 SPM H61 H N N 148 SPM H62 H N N 149 SPM H71 H N N 150 SPM H72 H N N 151 SPM H81 H N N 152 SPM H82 H N N 153 SPM H91 H N N 154 SPM H92 H N N 155 SPM HN0 H N N 156 SPM H111 H N N 157 SPM H112 H N N 158 SPM H121 H N N 159 SPM H122 H N N 160 SPM H131 H N N 161 SPM H132 H N N 162 SPM HN41 H N N 163 SPM HN42 H N N 164 U OP3 O N N 165 U P P N N 166 U OP1 O N N 167 U OP2 O N N 168 U "O5'" O N N 169 U "C5'" C N N 170 U "C4'" C N R 171 U "O4'" O N N 172 U "C3'" C N S 173 U "O3'" O N N 174 U "C2'" C N R 175 U "O2'" O N N 176 U "C1'" C N R 177 U N1 N N N 178 U C2 C N N 179 U O2 O N N 180 U N3 N N N 181 U C4 C N N 182 U O4 O N N 183 U C5 C N N 184 U C6 C N N 185 U HOP3 H N N 186 U HOP2 H N N 187 U "H5'" H N N 188 U "H5''" H N N 189 U "H4'" H N N 190 U "H3'" H N N 191 U "HO3'" H N N 192 U "H2'" H N N 193 U "HO2'" H N N 194 U "H1'" H N N 195 U H3 H N N 196 U H5 H N N 197 U H6 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GAI C N1 doub N N 116 GAI C N2 sing N N 117 GAI C N3 sing N N 118 GAI N1 HN1 sing N N 119 GAI N2 HN21 sing N N 120 GAI N2 HN22 sing N N 121 GAI N3 HN31 sing N N 122 GAI N3 HN32 sing N N 123 HOH O H1 sing N N 124 HOH O H2 sing N N 125 SPM N1 C2 sing N N 126 SPM N1 HN11 sing N N 127 SPM N1 HN12 sing N N 128 SPM C2 C3 sing N N 129 SPM C2 H21 sing N N 130 SPM C2 H22 sing N N 131 SPM C3 C4 sing N N 132 SPM C3 H31 sing N N 133 SPM C3 H32 sing N N 134 SPM C4 N5 sing N N 135 SPM C4 H41 sing N N 136 SPM C4 H42 sing N N 137 SPM N5 C6 sing N N 138 SPM N5 HN5 sing N N 139 SPM C6 C7 sing N N 140 SPM C6 H61 sing N N 141 SPM C6 H62 sing N N 142 SPM C7 C8 sing N N 143 SPM C7 H71 sing N N 144 SPM C7 H72 sing N N 145 SPM C8 C9 sing N N 146 SPM C8 H81 sing N N 147 SPM C8 H82 sing N N 148 SPM C9 N10 sing N N 149 SPM C9 H91 sing N N 150 SPM C9 H92 sing N N 151 SPM N10 C11 sing N N 152 SPM N10 HN0 sing N N 153 SPM C11 C12 sing N N 154 SPM C11 H111 sing N N 155 SPM C11 H112 sing N N 156 SPM C12 C13 sing N N 157 SPM C12 H121 sing N N 158 SPM C12 H122 sing N N 159 SPM C13 N14 sing N N 160 SPM C13 H131 sing N N 161 SPM C13 H132 sing N N 162 SPM N14 HN41 sing N N 163 SPM N14 HN42 sing N N 164 U OP3 P sing N N 165 U OP3 HOP3 sing N N 166 U P OP1 doub N N 167 U P OP2 sing N N 168 U P "O5'" sing N N 169 U OP2 HOP2 sing N N 170 U "O5'" "C5'" sing N N 171 U "C5'" "C4'" sing N N 172 U "C5'" "H5'" sing N N 173 U "C5'" "H5''" sing N N 174 U "C4'" "O4'" sing N N 175 U "C4'" "C3'" sing N N 176 U "C4'" "H4'" sing N N 177 U "O4'" "C1'" sing N N 178 U "C3'" "O3'" sing N N 179 U "C3'" "C2'" sing N N 180 U "C3'" "H3'" sing N N 181 U "O3'" "HO3'" sing N N 182 U "C2'" "O2'" sing N N 183 U "C2'" "C1'" sing N N 184 U "C2'" "H2'" sing N N 185 U "O2'" "HO2'" sing N N 186 U "C1'" N1 sing N N 187 U "C1'" "H1'" sing N N 188 U N1 C2 sing N N 189 U N1 C6 sing N N 190 U C2 O2 doub N N 191 U C2 N3 sing N N 192 U N3 C4 sing N N 193 U N3 H3 sing N N 194 U C4 O4 doub N N 195 U C4 C5 sing N N 196 U C5 C6 doub N N 197 U C5 H5 sing N N 198 U C6 H6 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5VJ9 'double helix' 5VJ9 'a-form double helix' 5VJ9 'hairpin loop' 5VJ9 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 16 1_555 -0.081 -0.145 0.007 -5.167 -1.625 -0.798 1 A_G1:C16_A A 1 ? A 16 ? 19 1 1 A C 2 1_555 A G 15 1_555 0.392 -0.107 -0.053 3.402 -4.807 1.392 2 A_C2:G15_A A 2 ? A 15 ? 19 1 1 A G 3 1_555 A U 14 1_555 -2.465 -0.592 -0.108 -3.176 -8.445 -4.817 3 A_G3:U14_A A 3 ? A 14 ? 28 1 1 A G 4 1_555 A C 13 1_555 -0.212 -0.163 -0.199 -6.200 -4.697 -0.580 4 A_G4:C13_A A 4 ? A 13 ? 19 1 1 A G 5 1_555 A C 12 1_555 -0.033 -0.122 -0.115 -6.516 -5.751 -0.936 5 A_G5:C12_A A 5 ? A 12 ? 19 1 1 A G 6 1_555 A C 11 1_555 -0.082 -0.117 0.002 -0.151 1.229 -2.747 6 A_G6:C11_A A 6 ? A 11 ? 19 1 1 B C 8 1_555 A G 9 1_555 0.208 -0.137 -0.151 8.304 -16.137 0.475 7 B_C8:G9_A B 8 ? A 9 ? 19 1 1 B G 9 1_555 A C 8 1_555 -0.089 -0.122 -0.053 -4.229 -10.409 -2.624 8 B_G9:C8_A B 9 ? A 8 ? 19 1 1 B C 11 1_555 B G 6 1_555 0.009 -0.093 -0.225 6.792 -1.690 -1.377 9 B_C11:G6_B B 11 ? B 6 ? 19 1 1 B C 12 1_555 B G 5 1_555 0.084 -0.093 -0.244 5.569 -7.032 -1.406 10 B_C12:G5_B B 12 ? B 5 ? 19 1 1 B C 13 1_555 B G 4 1_555 0.078 -0.095 -0.147 3.996 -4.439 -0.511 11 B_C13:G4_B B 13 ? B 4 ? 19 1 1 B U 14 1_555 B G 3 1_555 2.404 -0.692 -0.048 4.123 -12.920 -5.104 12 B_U14:G3_B B 14 ? B 3 ? 28 1 1 B G 15 1_555 B C 2 1_555 -0.293 -0.198 -0.179 -5.705 -6.898 1.062 13 B_G15:C2_B B 15 ? B 2 ? 19 1 1 B C 16 1_555 B G 1 1_555 0.339 -0.159 -0.013 3.987 -1.902 0.417 14 B_C16:G1_B B 16 ? B 1 ? 19 1 1 C G 1 1_555 C C 16 1_555 -0.212 -0.143 0.052 -4.020 -3.066 -1.401 15 C_G1:C16_C C 1 ? C 16 ? 19 1 1 C C 2 1_555 C G 15 1_555 0.150 -0.162 -0.145 7.745 -9.133 -1.768 16 C_C2:G15_C C 2 ? C 15 ? 19 1 1 C G 3 1_555 C U 14 1_555 -2.453 -0.613 0.052 -0.136 -9.716 -2.896 17 C_G3:U14_C C 3 ? C 14 ? 28 1 1 C G 4 1_555 C C 13 1_555 -0.224 -0.141 -0.210 -6.668 -6.471 0.591 18 C_G4:C13_C C 4 ? C 13 ? 19 1 1 C G 5 1_555 C C 12 1_555 -0.138 -0.169 -0.228 -8.314 -6.791 -2.367 19 C_G5:C12_C C 5 ? C 12 ? 19 1 1 C G 6 1_555 C C 11 1_555 -0.058 -0.113 -0.130 -0.983 0.016 -2.136 20 C_G6:C11_C C 6 ? C 11 ? 19 1 1 D C 8 1_555 C G 9 1_555 0.112 -0.147 -0.042 3.431 -10.556 -1.788 21 D_C8:G9_C D 8 ? C 9 ? 19 1 1 D G 9 1_555 C C 8 1_555 -0.117 -0.085 0.171 2.094 -5.974 -2.724 22 D_G9:C8_C D 9 ? C 8 ? 19 1 1 D C 11 1_555 D G 6 1_555 0.059 -0.126 -0.234 7.071 -2.810 -3.342 23 D_C11:G6_D D 11 ? D 6 ? 19 1 1 D C 12 1_555 D G 5 1_555 0.143 -0.124 -0.269 7.977 -5.216 -1.260 24 D_C12:G5_D D 12 ? D 5 ? 19 1 1 D C 13 1_555 D G 4 1_555 0.214 -0.043 -0.122 5.202 -8.698 1.775 25 D_C13:G4_D D 13 ? D 4 ? 19 1 1 D U 14 1_555 D G 3 1_555 2.338 -0.613 -0.042 -1.037 -10.208 -3.486 26 D_U14:G3_D D 14 ? D 3 ? 28 1 1 D G 15 1_555 D C 2 1_555 -0.110 -0.210 -0.100 -4.908 -6.693 0.070 27 D_G15:C2_D D 15 ? D 2 ? 19 1 1 D C 16 1_555 D G 1 1_555 0.381 -0.087 0.034 5.180 -3.494 2.402 28 D_C16:G1_D D 16 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 16 1_555 A C 2 1_555 A G 15 1_555 -0.422 -2.177 3.159 0.605 0.615 28.746 -4.515 0.979 3.103 1.238 -1.218 28.758 1 AA_G1C2:G15C16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A C 2 1_555 A G 15 1_555 A G 3 1_555 A U 14 1_555 0.548 -2.569 3.372 -0.443 8.399 19.067 -10.237 -1.680 2.052 23.906 1.262 20.824 2 AA_C2G3:U14G15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A G 3 1_555 A U 14 1_555 A G 4 1_555 A C 13 1_555 0.174 -1.737 3.387 0.802 4.134 40.630 -2.949 -0.161 3.206 5.935 -1.152 40.839 3 AA_G3G4:C13U14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A G 4 1_555 A C 13 1_555 A G 5 1_555 A C 12 1_555 0.159 -1.910 3.341 1.338 3.130 31.155 -4.122 -0.043 3.142 5.807 -2.482 31.336 4 AA_G4G5:C12C13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A G 5 1_555 A C 12 1_555 A G 6 1_555 A C 11 1_555 0.191 -2.223 3.135 -0.007 1.012 28.332 -4.760 -0.392 3.056 2.067 0.015 28.350 5 AA_G5G6:C11C12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A G 6 1_555 A C 11 1_555 B C 8 1_555 A G 9 1_555 -3.657 0.226 3.103 -1.427 -1.427 109.139 0.155 2.227 3.133 -0.876 0.875 109.151 6 AB_G6C8:G9C11_AA A 6 ? A 11 ? B 8 ? A 9 ? 1 B C 8 1_555 A G 9 1_555 B G 9 1_555 A C 8 1_555 -0.377 -1.323 3.700 -0.414 7.725 36.589 -3.177 0.529 3.365 12.137 0.651 37.370 7 BB_C8G9:C8G9_AA B 8 ? A 9 ? B 9 ? A 8 ? 1 B G 9 1_555 A C 8 1_555 B C 11 1_555 B G 6 1_555 3.731 0.133 3.099 2.421 -2.926 110.049 0.115 -2.248 3.151 -1.785 -1.477 110.093 8 BB_G9C11:G6C8_BA B 9 ? A 8 ? B 11 ? B 6 ? 1 B C 11 1_555 B G 6 1_555 B C 12 1_555 B G 5 1_555 -0.752 -2.066 3.329 -1.483 5.690 30.049 -5.001 1.141 2.930 10.845 2.825 30.606 9 BB_C11C12:G5G6_BB B 11 ? B 6 ? B 12 ? B 5 ? 1 B C 12 1_555 B G 5 1_555 B C 13 1_555 B G 4 1_555 -0.291 -1.879 3.394 -1.651 6.790 29.389 -4.956 0.231 2.909 13.150 3.197 30.190 10 BB_C12C13:G4G5_BB B 12 ? B 5 ? B 13 ? B 4 ? 1 B C 13 1_555 B G 4 1_555 B U 14 1_555 B G 3 1_555 -0.115 -1.671 3.324 -0.957 6.229 40.202 -3.081 0.062 3.044 8.994 1.382 40.673 11 BB_C13U14:G3G4_BB B 13 ? B 4 ? B 14 ? B 3 ? 1 B U 14 1_555 B G 3 1_555 B G 15 1_555 B C 2 1_555 -0.022 -2.245 3.544 2.589 6.203 22.601 -7.560 0.916 2.816 15.395 -6.425 23.567 12 BB_U14G15:C2G3_BB B 14 ? B 3 ? B 15 ? B 2 ? 1 B G 15 1_555 B C 2 1_555 B C 16 1_555 B G 1 1_555 0.518 -1.742 3.165 -0.288 1.854 30.856 -3.610 -1.025 3.053 3.480 0.540 30.912 13 BB_G15C16:G1C2_BB B 15 ? B 2 ? B 16 ? B 1 ? 1 C G 1 1_555 C C 16 1_555 C C 2 1_555 C G 15 1_555 -0.556 -1.866 3.059 0.062 1.186 31.198 -3.675 1.045 2.986 2.204 -0.115 31.220 14 CC_G1C2:G15C16_CC C 1 ? C 16 ? C 2 ? C 15 ? 1 C C 2 1_555 C G 15 1_555 C G 3 1_555 C U 14 1_555 0.421 -2.124 3.370 -3.269 8.620 22.536 -7.495 -1.929 2.327 20.966 7.950 24.326 15 CC_C2G3:U14G15_CC C 2 ? C 15 ? C 3 ? C 14 ? 1 C G 3 1_555 C U 14 1_555 C G 4 1_555 C C 13 1_555 0.267 -1.726 3.492 1.909 5.857 39.926 -3.182 -0.165 3.226 8.516 -2.776 40.380 16 CC_G3G4:C13U14_CC C 3 ? C 14 ? C 4 ? C 13 ? 1 C G 4 1_555 C C 13 1_555 C G 5 1_555 C C 12 1_555 0.063 -1.831 3.368 2.055 4.874 31.405 -4.218 0.256 3.054 8.925 -3.762 31.836 17 CC_G4G5:C12C13_CC C 4 ? C 13 ? C 5 ? C 12 ? 1 C G 5 1_555 C C 12 1_555 C G 6 1_555 C C 11 1_555 0.087 -2.041 3.133 -0.085 3.155 29.255 -4.643 -0.188 2.901 6.223 0.168 29.421 18 CC_G5G6:C11C12_CC C 5 ? C 12 ? C 6 ? C 11 ? 1 C G 6 1_555 C C 11 1_555 D C 8 1_555 C G 9 1_555 -3.572 0.147 3.079 -5.810 -1.102 107.044 0.105 2.147 3.210 -0.685 3.611 107.157 19 CD_G6C8:G9C11_CC C 6 ? C 11 ? D 8 ? C 9 ? 1 D C 8 1_555 C G 9 1_555 D G 9 1_555 C C 8 1_555 -0.277 -0.942 3.445 -2.258 5.798 36.197 -2.315 0.121 3.271 9.247 3.601 36.710 20 DD_C8G9:C8G9_CC D 8 ? C 9 ? D 9 ? C 8 ? 1 D G 9 1_555 C C 8 1_555 D C 11 1_555 D G 6 1_555 3.463 -0.057 3.231 7.557 -3.977 105.897 0.018 -2.063 3.399 -2.489 -4.730 106.137 21 DD_G9C11:G6C8_DC D 9 ? C 8 ? D 11 ? D 6 ? 1 D C 11 1_555 D G 6 1_555 D C 12 1_555 D G 5 1_555 -0.039 -1.960 3.344 -1.190 2.991 29.684 -4.422 -0.170 3.135 5.817 2.315 29.854 22 DD_C11C12:G5G6_DD D 11 ? D 6 ? D 12 ? D 5 ? 1 D C 12 1_555 D G 5 1_555 D C 13 1_555 D G 4 1_555 -0.001 -2.012 3.387 -1.864 5.771 31.592 -4.646 -0.325 2.977 10.480 3.384 32.154 23 DD_C12C13:G4G5_DD D 12 ? D 5 ? D 13 ? D 4 ? 1 D C 13 1_555 D G 4 1_555 D U 14 1_555 D G 3 1_555 -0.431 -1.659 3.429 0.515 5.188 39.629 -3.033 0.690 3.190 7.613 -0.755 39.957 24 DD_C13U14:G3G4_DD D 13 ? D 4 ? D 14 ? D 3 ? 1 D U 14 1_555 D G 3 1_555 D G 15 1_555 D C 2 1_555 -0.010 -1.839 3.243 2.750 8.243 23.101 -6.566 0.778 2.433 19.711 -6.575 24.660 25 DD_U14G15:C2G3_DD D 14 ? D 3 ? D 15 ? D 2 ? 1 D G 15 1_555 D C 2 1_555 D C 16 1_555 D G 1 1_555 0.489 -1.929 3.092 -0.043 1.880 32.030 -3.804 -0.893 2.976 3.404 0.079 32.084 26 DD_G15C16:G1C2_DD D 15 ? D 2 ? D 16 ? D 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM022778 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5VJ9 _atom_sites.fract_transf_matrix[1][1] 0.019900 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013830 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K MG N NA O P # loop_