HEADER TRANSCRIPTION 19-APR-17 5VJI TITLE CRYSTAL STRUCTURE OF THE CLOCK TRANSCRIPTION DOMAIN EXON19 IN COMPLEX TITLE 2 WITH A REPRESSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 516-560; COMPND 5 SYNONYM: MCLOCK; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CLOCK-INTERACTING PACEMAKER; COMPND 10 CHAIN: C, F; COMPND 11 FRAGMENT: UNP RESIDUES 352-414; COMPND 12 SYNONYM: CLOCK-INTERACTING CIRCADIAN PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CLOCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: CIPC, KIAA1737; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CIRCADIAN RHYTHM, CLOCK PROTEIN, TRANSCRIPTION ACTIVATION, REPRESSOR, KEYWDS 2 COILED COIL, CIPC, CIRCADIAN CLOCK, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.HOU,L.SU,J.PEI,N.V.GRISHIN,H.ZHANG REVDAT 6 06-NOV-24 5VJI 1 REMARK REVDAT 5 01-JAN-20 5VJI 1 REMARK REVDAT 4 06-SEP-17 5VJI 1 REMARK REVDAT 3 16-AUG-17 5VJI 1 JRNL REVDAT 2 19-JUL-17 5VJI 1 JRNL REVDAT 1 07-JUN-17 5VJI 0 JRNL AUTH Z.HOU,L.SU,J.PEI,N.V.GRISHIN,H.ZHANG JRNL TITL CRYSTAL STRUCTURE OF THE CLOCK TRANSACTIVATION DOMAIN EXON19 JRNL TITL 2 IN COMPLEX WITH A REPRESSOR. JRNL REF STRUCTURE V. 25 1187 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28669630 JRNL DOI 10.1016/J.STR.2017.05.023 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 22684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0431 - 4.5810 0.98 2870 158 0.2481 0.3169 REMARK 3 2 4.5810 - 3.6386 1.00 2912 174 0.1741 0.2549 REMARK 3 3 3.6386 - 3.1793 1.00 2872 196 0.1958 0.2383 REMARK 3 4 3.1793 - 2.8890 0.99 2887 172 0.2129 0.2769 REMARK 3 5 2.8890 - 2.6821 0.99 2887 143 0.2273 0.2864 REMARK 3 6 2.6821 - 2.5241 0.99 2941 139 0.2124 0.2671 REMARK 3 7 2.5241 - 2.3977 0.99 2873 144 0.2042 0.2782 REMARK 3 8 2.3977 - 2.2934 0.99 2960 125 0.1997 0.2998 REMARK 3 9 2.2934 - 2.2051 0.99 2841 158 0.2145 0.2841 REMARK 3 10 2.2051 - 2.1291 0.99 2959 142 0.2187 0.2961 REMARK 3 11 2.1291 - 2.0625 0.98 2865 132 0.2342 0.3181 REMARK 3 12 2.0625 - 2.0036 0.88 2520 150 0.2291 0.3226 REMARK 3 13 2.0036 - 1.9509 0.75 2224 130 0.2376 0.3186 REMARK 3 14 1.9509 - 1.9033 0.65 1898 79 0.2714 0.4149 REMARK 3 15 1.9033 - 1.8600 0.52 1488 86 0.2972 0.2767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2461 REMARK 3 ANGLE : 1.169 3289 REMARK 3 CHIRALITY : 0.057 377 REMARK 3 PLANARITY : 0.007 432 REMARK 3 DIHEDRAL : 16.542 1591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1:50) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2629 26.8424 90.0955 REMARK 3 T TENSOR REMARK 3 T11: 0.0027 T22: 0.0431 REMARK 3 T33: 0.1825 T12: -0.0105 REMARK 3 T13: -0.0027 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.6426 L22: 2.7621 REMARK 3 L33: 4.8788 L12: -1.2077 REMARK 3 L13: -2.0323 L23: 3.4010 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0508 S13: -0.0764 REMARK 3 S21: 0.0580 S22: -0.1087 S23: 0.1301 REMARK 3 S31: 0.0662 S32: -0.2039 S33: 0.1693 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 7:48) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1813 29.2753 73.3161 REMARK 3 T TENSOR REMARK 3 T11: -0.0240 T22: 0.1385 REMARK 3 T33: 0.1560 T12: -0.0136 REMARK 3 T13: 0.0083 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.1175 L22: 1.2442 REMARK 3 L33: 1.4286 L12: -0.0146 REMARK 3 L13: 1.2271 L23: -0.2582 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0484 S13: 0.1185 REMARK 3 S21: -0.2412 S22: -0.0426 S23: -0.1305 REMARK 3 S31: -0.0359 S32: 0.5070 S33: -0.1205 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 2:63) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4023 33.3106 77.9561 REMARK 3 T TENSOR REMARK 3 T11: -0.0812 T22: 0.0628 REMARK 3 T33: 0.1673 T12: -0.0433 REMARK 3 T13: -0.0631 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.4624 L22: 1.5939 REMARK 3 L33: 3.7174 L12: 0.2131 REMARK 3 L13: -0.0630 L23: 1.9463 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.0058 S13: -0.0684 REMARK 3 S21: -0.3040 S22: -0.1017 S23: 0.0902 REMARK 3 S31: -0.2273 S32: -0.2793 S33: 0.2243 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 8:49) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4838 48.9959 78.3312 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.0659 REMARK 3 T33: 0.1778 T12: -0.1036 REMARK 3 T13: -0.0290 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.6346 L22: 0.8603 REMARK 3 L33: 0.6743 L12: 0.3294 REMARK 3 L13: -0.1134 L23: 0.5254 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: 0.0107 S13: 0.0068 REMARK 3 S21: -0.2878 S22: 0.0611 S23: -0.0343 REMARK 3 S31: -0.2758 S32: 0.2134 S33: -0.0945 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:49) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2715 49.4131 61.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.5150 T22: 0.1198 REMARK 3 T33: 0.2062 T12: 0.1100 REMARK 3 T13: 0.0256 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.9856 L22: 1.7302 REMARK 3 L33: 4.1739 L12: 0.3876 REMARK 3 L13: 0.3959 L23: 2.5847 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: 0.2367 S13: 0.0930 REMARK 3 S21: 0.3562 S22: 0.1232 S23: 0.0985 REMARK 3 S31: -0.3566 S32: -0.0681 S33: 0.1160 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN F AND RESSEQ 2:63) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7135 43.8436 75.2434 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.1241 REMARK 3 T33: 0.1494 T12: 0.0164 REMARK 3 T13: -0.0038 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 0.9945 L22: 0.9285 REMARK 3 L33: 3.4122 L12: -0.5740 REMARK 3 L13: -1.3282 L23: 1.6389 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: -0.0898 S13: 0.0491 REMARK 3 S21: 0.1059 S22: -0.0757 S23: 0.1227 REMARK 3 S31: -0.0603 S32: -0.3289 S33: 0.2054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH7.3 27% PEG2000MME 1% REMARK 280 BEAT-DDM, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.16950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.18150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.79250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.18150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.16950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.79250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 51 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 MSE B 3 REMARK 465 ASP B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 49 REMARK 465 HIS B 50 REMARK 465 GLY B 51 REMARK 465 GLY C 1 REMARK 465 ARG C 50 REMARK 465 ALA C 51 REMARK 465 PRO C 52 REMARK 465 GLN C 53 REMARK 465 ALA C 54 REMARK 465 SER C 64 REMARK 465 GLY D 1 REMARK 465 ALA D 2 REMARK 465 MSE D 3 REMARK 465 ASP D 4 REMARK 465 PRO D 5 REMARK 465 GLU D 6 REMARK 465 PHE D 7 REMARK 465 HIS D 50 REMARK 465 GLY D 51 REMARK 465 HIS E 50 REMARK 465 GLY E 51 REMARK 465 GLY F 1 REMARK 465 SER F 49 REMARK 465 ARG F 50 REMARK 465 ALA F 51 REMARK 465 PRO F 52 REMARK 465 GLN F 53 REMARK 465 ALA F 54 REMARK 465 SER F 64 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 7 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP C 55 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 55 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 31 NH2 ARG A 34 2.04 REMARK 500 O HOH B 111 O HOH F 125 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 115 O HOH F 122 1655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 47 51.92 -102.00 REMARK 500 GLN E 47 1.03 -68.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VJI A 7 51 UNP O08785 CLOCK_MOUSE 516 560 DBREF 5VJI B 7 51 UNP O08785 CLOCK_MOUSE 516 560 DBREF 5VJI C 2 64 UNP Q8R0W1 CIPC_MOUSE 352 414 DBREF 5VJI D 7 51 UNP O08785 CLOCK_MOUSE 516 560 DBREF 5VJI E 7 51 UNP O08785 CLOCK_MOUSE 516 560 DBREF 5VJI F 2 64 UNP Q8R0W1 CIPC_MOUSE 352 414 SEQADV 5VJI GLY A 1 UNP O08785 EXPRESSION TAG SEQADV 5VJI ALA A 2 UNP O08785 EXPRESSION TAG SEQADV 5VJI MSE A 3 UNP O08785 EXPRESSION TAG SEQADV 5VJI ASP A 4 UNP O08785 EXPRESSION TAG SEQADV 5VJI PRO A 5 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLU A 6 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLY B 1 UNP O08785 EXPRESSION TAG SEQADV 5VJI ALA B 2 UNP O08785 EXPRESSION TAG SEQADV 5VJI MSE B 3 UNP O08785 EXPRESSION TAG SEQADV 5VJI ASP B 4 UNP O08785 EXPRESSION TAG SEQADV 5VJI PRO B 5 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLU B 6 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLY C 1 UNP Q8R0W1 EXPRESSION TAG SEQADV 5VJI GLY D 1 UNP O08785 EXPRESSION TAG SEQADV 5VJI ALA D 2 UNP O08785 EXPRESSION TAG SEQADV 5VJI MSE D 3 UNP O08785 EXPRESSION TAG SEQADV 5VJI ASP D 4 UNP O08785 EXPRESSION TAG SEQADV 5VJI PRO D 5 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLU D 6 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLY E 1 UNP O08785 EXPRESSION TAG SEQADV 5VJI ALA E 2 UNP O08785 EXPRESSION TAG SEQADV 5VJI MSE E 3 UNP O08785 EXPRESSION TAG SEQADV 5VJI ASP E 4 UNP O08785 EXPRESSION TAG SEQADV 5VJI PRO E 5 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLU E 6 UNP O08785 EXPRESSION TAG SEQADV 5VJI GLY F 1 UNP Q8R0W1 EXPRESSION TAG SEQRES 1 A 51 GLY ALA MSE ASP PRO GLU PHE SER ALA GLN LEU GLY ALA SEQRES 2 A 51 MSE GLN HIS LEU LYS ASP GLN LEU GLU GLN ARG THR ARG SEQRES 3 A 51 MSE ILE GLU ALA ASN ILE HIS ARG GLN GLN GLU GLU LEU SEQRES 4 A 51 ARG LYS ILE GLN GLU GLN LEU GLN MSE VAL HIS GLY SEQRES 1 B 51 GLY ALA MSE ASP PRO GLU PHE SER ALA GLN LEU GLY ALA SEQRES 2 B 51 MSE GLN HIS LEU LYS ASP GLN LEU GLU GLN ARG THR ARG SEQRES 3 B 51 MSE ILE GLU ALA ASN ILE HIS ARG GLN GLN GLU GLU LEU SEQRES 4 B 51 ARG LYS ILE GLN GLU GLN LEU GLN MSE VAL HIS GLY SEQRES 1 C 64 GLY ASN THR LEU VAL VAL LEU HIS LYS SER GLY LEU LEU SEQRES 2 C 64 GLU ILE THR LEU LYS THR LYS GLU LEU ILE ARG GLN ASN SEQRES 3 C 64 GLN ALA THR GLN ALA GLU LEU ASP GLN LEU LYS GLU GLN SEQRES 4 C 64 THR GLN MSE PHE ILE GLU ALA THR LYS SER ARG ALA PRO SEQRES 5 C 64 GLN ALA TRP ALA LYS LEU GLN ALA SER LEU THR SER SEQRES 1 D 51 GLY ALA MSE ASP PRO GLU PHE SER ALA GLN LEU GLY ALA SEQRES 2 D 51 MSE GLN HIS LEU LYS ASP GLN LEU GLU GLN ARG THR ARG SEQRES 3 D 51 MSE ILE GLU ALA ASN ILE HIS ARG GLN GLN GLU GLU LEU SEQRES 4 D 51 ARG LYS ILE GLN GLU GLN LEU GLN MSE VAL HIS GLY SEQRES 1 E 51 GLY ALA MSE ASP PRO GLU PHE SER ALA GLN LEU GLY ALA SEQRES 2 E 51 MSE GLN HIS LEU LYS ASP GLN LEU GLU GLN ARG THR ARG SEQRES 3 E 51 MSE ILE GLU ALA ASN ILE HIS ARG GLN GLN GLU GLU LEU SEQRES 4 E 51 ARG LYS ILE GLN GLU GLN LEU GLN MSE VAL HIS GLY SEQRES 1 F 64 GLY ASN THR LEU VAL VAL LEU HIS LYS SER GLY LEU LEU SEQRES 2 F 64 GLU ILE THR LEU LYS THR LYS GLU LEU ILE ARG GLN ASN SEQRES 3 F 64 GLN ALA THR GLN ALA GLU LEU ASP GLN LEU LYS GLU GLN SEQRES 4 F 64 THR GLN MSE PHE ILE GLU ALA THR LYS SER ARG ALA PRO SEQRES 5 F 64 GLN ALA TRP ALA LYS LEU GLN ALA SER LEU THR SER MODRES 5VJI MSE A 14 MET MODIFIED RESIDUE MODRES 5VJI MSE A 27 MET MODIFIED RESIDUE MODRES 5VJI MSE A 48 MET MODIFIED RESIDUE MODRES 5VJI MSE B 14 MET MODIFIED RESIDUE MODRES 5VJI MSE B 27 MET MODIFIED RESIDUE MODRES 5VJI MSE B 48 MET MODIFIED RESIDUE MODRES 5VJI MSE C 42 MET MODIFIED RESIDUE MODRES 5VJI MSE D 14 MET MODIFIED RESIDUE MODRES 5VJI MSE D 27 MET MODIFIED RESIDUE MODRES 5VJI MSE D 48 MET MODIFIED RESIDUE MODRES 5VJI MSE E 14 MET MODIFIED RESIDUE MODRES 5VJI MSE E 27 MET MODIFIED RESIDUE MODRES 5VJI MSE E 48 MET MODIFIED RESIDUE MODRES 5VJI MSE F 42 MET MODIFIED RESIDUE HET MSE A 3 8 HET MSE A 14 8 HET MSE A 27 8 HET MSE A 48 13 HET MSE B 14 13 HET MSE B 27 8 HET MSE B 48 8 HET MSE C 42 8 HET MSE D 14 8 HET MSE D 27 8 HET MSE D 48 8 HET MSE E 3 8 HET MSE E 14 8 HET MSE E 27 8 HET MSE E 48 8 HET MSE F 42 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 7 HOH *118(H2 O) HELIX 1 AA1 ASP A 4 GLN A 47 1 44 HELIX 2 AA2 SER B 8 GLN B 47 1 40 HELIX 3 AA3 THR C 3 SER C 10 1 8 HELIX 4 AA4 GLY C 11 THR C 47 1 37 HELIX 5 AA5 LYS C 48 SER C 49 5 2 HELIX 6 AA6 TRP C 55 TRP C 55 5 1 HELIX 7 AA7 ALA C 56 THR C 63 1 8 HELIX 8 AA8 ALA D 9 VAL D 49 1 41 HELIX 9 AA9 ASP E 4 GLN E 47 1 44 HELIX 10 AB1 THR F 3 SER F 10 1 8 HELIX 11 AB2 GLY F 11 LYS F 48 1 38 HELIX 12 AB3 ALA F 56 THR F 63 1 8 LINK C ALA A 2 N MSE A 3 1555 1555 1.32 LINK C MSE A 3 N ASP A 4 1555 1555 1.33 LINK C ALA A 13 N MSE A 14 1555 1555 1.34 LINK C MSE A 14 N GLN A 15 1555 1555 1.34 LINK C ARG A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ILE A 28 1555 1555 1.33 LINK C GLN A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N VAL A 49 1555 1555 1.34 LINK C ALA B 13 N MSE B 14 1555 1555 1.33 LINK C MSE B 14 N GLN B 15 1555 1555 1.35 LINK C ARG B 26 N MSE B 27 1555 1555 1.34 LINK C MSE B 27 N ILE B 28 1555 1555 1.33 LINK C GLN B 47 N MSE B 48 1555 1555 1.33 LINK C GLN C 41 N MSE C 42 1555 1555 1.32 LINK C MSE C 42 N PHE C 43 1555 1555 1.33 LINK C ALA D 13 N MSE D 14 1555 1555 1.33 LINK C MSE D 14 N GLN D 15 1555 1555 1.33 LINK C ARG D 26 N MSE D 27 1555 1555 1.33 LINK C MSE D 27 N ILE D 28 1555 1555 1.34 LINK C GLN D 47 N MSE D 48 1555 1555 1.33 LINK C MSE D 48 N VAL D 49 1555 1555 1.33 LINK C ALA E 2 N MSE E 3 1555 1555 1.32 LINK C MSE E 3 N ASP E 4 1555 1555 1.33 LINK C ALA E 13 N MSE E 14 1555 1555 1.34 LINK C MSE E 14 N GLN E 15 1555 1555 1.34 LINK C ARG E 26 N MSE E 27 1555 1555 1.32 LINK C MSE E 27 N ILE E 28 1555 1555 1.33 LINK C GLN E 47 N MSE E 48 1555 1555 1.33 LINK C MSE E 48 N VAL E 49 1555 1555 1.33 LINK C GLN F 41 N MSE F 42 1555 1555 1.33 LINK C MSE F 42 N PHE F 43 1555 1555 1.34 CRYST1 24.339 77.585 150.363 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006651 0.00000