HEADER DE NOVO PROTEIN 19-APR-17 5VJU TITLE DE NOVO PHOTOSYNTHETIC REACTION CENTER PROTEIN VARIANT EQUIPPED WITH TITLE 2 HIS-TYR H-BOND, HEME B, AND CD(II) IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REACTION CENTER MAQUETTE LEU71HIS VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 GENE: DESIGNED; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJ414 KEYWDS MAQUETTE, PROTEIN DESIGN, CHARGE SEPARATION, ARTIFICIAL KEYWDS 2 PHOTOSYNTHESIS, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.M.ENNIST,S.E.STAYROOK,P.L.DUTTON,C.C.MOSER REVDAT 4 31-AUG-22 5VJU 1 JRNL REVDAT 3 16-MAR-22 5VJU 1 LINK REVDAT 2 15-JAN-20 5VJU 1 REMARK REVDAT 1 25-APR-18 5VJU 0 JRNL AUTH N.M.ENNIST,Z.ZHAO,S.E.STAYROOK,B.M.DISCHER,P.L.DUTTON, JRNL AUTH 2 C.C.MOSER JRNL TITL DE NOVO PROTEIN DESIGN OF PHOTOCHEMICAL REACTION CENTERS. JRNL REF NAT COMMUN V. 13 4937 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35999239 JRNL DOI 10.1038/S41467-022-32710-5 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 9587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1651 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1643 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2221 ; 1.782 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3782 ; 1.027 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 6.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;41.432 ;27.363 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;15.390 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 231 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1926 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 373 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5VJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION OCT 15, 2015 REMARK 200 BUILT=20151015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 71.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.705 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.35 REMARK 200 R MERGE FOR SHELL (I) : 0.10100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.03, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% W/V PEG 1500, 70 MM CDCL2, 100 MM REMARK 280 NA ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 12.93800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 105 O HOH A 301 1.57 REMARK 500 OD2 ASP A 63 O HOH A 302 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 4 OE1 REMARK 620 2 GLU A 4 OE2 52.6 REMARK 620 3 GLU A 133 OE1 23.6 45.9 REMARK 620 4 GLU A 133 OE2 22.3 44.9 1.8 REMARK 620 5 GLU A 136 OE1 24.0 42.4 3.6 2.8 REMARK 620 6 GLU A 136 OE2 24.4 40.6 5.3 4.5 1.8 REMARK 620 7 HOH A 377 O 27.6 43.1 4.7 5.4 3.8 4.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 208 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 GLU A 8 OE2 52.9 REMARK 620 3 HOH A 374 O 102.5 98.9 REMARK 620 4 HOH A 375 O 152.1 102.7 94.0 REMARK 620 5 HOH A 386 O 98.4 150.5 93.9 102.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HEM A 201 NA 90.6 REMARK 620 3 HEM A 201 NB 88.2 88.6 REMARK 620 4 HEM A 201 NC 89.0 179.0 90.5 REMARK 620 5 HEM A 201 ND 92.2 91.2 179.6 89.8 REMARK 620 6 HIS A 110 NE2 178.7 90.6 91.2 89.8 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 34 OE1 REMARK 620 2 GLU A 34 OE2 53.0 REMARK 620 3 GLU A 64 OE1 97.6 150.6 REMARK 620 4 HIS A 67 ND1 110.8 104.7 86.6 REMARK 620 5 GLU A 135 OE1 122.5 74.1 130.7 102.3 REMARK 620 6 HOH A 334 O 87.2 96.9 77.5 157.6 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 207 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 43 OE2 REMARK 620 2 GLU A 46 OE1 96.6 REMARK 620 3 GLU A 46 OE2 132.1 54.3 REMARK 620 4 GLU A 69 OE1 95.7 101.9 61.4 REMARK 620 5 GLU A 69 OE2 93.1 104.8 65.1 3.6 REMARK 620 6 GLU A 72 OE2 91.0 109.3 69.6 8.3 4.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE2 REMARK 620 2 GLU A 140 OE1 53.8 REMARK 620 3 GLU A 140 OE2 57.5 6.9 REMARK 620 4 GLU A 143 OE1 46.3 11.3 11.6 REMARK 620 5 HOH A 349 O 54.9 2.3 8.4 13.6 REMARK 620 6 HOH A 380 O 45.2 8.7 14.2 9.6 9.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE2 REMARK 620 2 GLU A 135 OE2 128.3 REMARK 620 3 HIS A 138 ND1 95.2 82.8 REMARK 620 4 GLU A 161 OE1 83.6 144.1 113.5 REMARK 620 5 GLU A 161 OE2 137.4 91.7 105.1 54.0 REMARK 620 6 HOH A 334 O 77.8 72.7 140.8 104.0 105.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 GLU A 80 OE2 52.2 REMARK 620 3 GLN A 97 OE1 78.1 29.2 REMARK 620 4 HOH A 339 O 81.3 36.0 8.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VJT RELATED DB: PDB REMARK 900 RELATED ID: 5VJS RELATED DB: PDB DBREF 5VJU A 1 196 PDB 5VJU 5VJU 1 196 SEQRES 1 A 196 GLY SER PRO GLU LEU ARG GLN GLU HIS GLN GLN LEU ALA SEQRES 2 A 196 GLN GLU PHE GLN GLN LEU LEU GLN GLU ILE GLN GLN LEU SEQRES 3 A 196 GLY ARG GLU LEU LEU LYS GLY GLU LEU GLN GLY ILE LYS SEQRES 4 A 196 GLN LEU ARG GLU ALA SER GLU LYS ALA ARG ASN PRO GLU SEQRES 5 A 196 LYS LYS SER VAL LEU GLN LYS ILE LEU GLU ASP GLU GLU SEQRES 6 A 196 LYS HIS ILE GLU LEU HIS GLU THR LEU GLN GLN THR GLY SEQRES 7 A 196 GLN GLU ALA GLN GLN LEU LEU GLN GLU LEU GLN GLN THR SEQRES 8 A 196 GLY GLN GLU LEU TRP GLN LEU GLY GLY SER GLY GLY PRO SEQRES 9 A 196 GLU LEU ARG GLN LYS HIS GLN GLN LEU ALA GLN LYS ILE SEQRES 10 A 196 GLN GLN LEU LEU GLN LYS HIS GLN GLN LEU GLY ALA LYS SEQRES 11 A 196 ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU LEU LEU GLU SEQRES 12 A 196 THR ILE LEU GLY GLY SER GLY GLY ASP GLU LEU ARG GLU SEQRES 13 A 196 LEU LEU LYS GLY GLU LEU GLN GLY ILE LYS GLN TYR ARG SEQRES 14 A 196 GLU LEU GLN GLN LEU GLY GLN LYS ALA GLN GLN LEU VAL SEQRES 15 A 196 GLN LYS LEU GLN GLN THR GLY GLN LYS LEU TRP GLN LEU SEQRES 16 A 196 GLY HET HEM A 201 43 HET CD A 202 1 HET CD A 203 1 HET CD A 204 1 HET CD A 205 1 HET CD A 206 1 HET CD A 207 1 HET CD A 208 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CD CADMIUM ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CD 7(CD 2+) FORMUL 10 HOH *88(H2 O) HELIX 1 AA1 GLY A 1 ALA A 48 1 48 HELIX 2 AA2 ASN A 50 GLY A 99 1 50 HELIX 3 AA3 GLY A 100 GLY A 102 5 3 HELIX 4 AA4 GLY A 103 LEU A 146 1 44 HELIX 5 AA5 GLU A 153 LEU A 192 1 40 LINK OE1 GLU A 4 CD CD A 204 1555 2656 2.61 LINK OE2 GLU A 4 CD CD A 204 1555 2656 2.27 LINK OE1 GLU A 8 CD CD A 208 1555 1555 2.52 LINK OE2 GLU A 8 CD CD A 208 1555 1555 2.35 LINK NE2 HIS A 9 FE HEM A 201 1555 1555 2.21 LINK OE1 GLU A 34 CD CD A 202 1555 1555 2.43 LINK OE2 GLU A 34 CD CD A 202 1555 1555 2.41 LINK OE2 GLU A 43 CD CD A 207 1555 1555 2.02 LINK OE1 GLU A 46 CD CD A 207 1555 1555 2.34 LINK OE2 GLU A 46 CD CD A 207 1555 1555 2.53 LINK OE2 GLU A 52 CD CD A 206 1555 2645 2.63 LINK OE1 GLU A 64 CD CD A 202 1555 1555 2.27 LINK OE2 GLU A 64 CD CD A 203 1555 1555 2.19 LINK ND1 HIS A 67 CD CD A 202 1555 1555 2.31 LINK OE1 GLU A 69 CD CD A 207 1555 2545 2.27 LINK OE2 GLU A 69 CD CD A 207 1555 2545 2.53 LINK OE2 GLU A 72 CD CD A 207 1555 2545 2.32 LINK OE1 GLU A 80 CD CD A 205 1555 2546 2.62 LINK OE2 GLU A 80 CD CD A 205 1555 2546 2.43 LINK OE1 GLN A 97 CD CD A 205 1555 1555 2.33 LINK NE2 HIS A 110 FE HEM A 201 1555 1555 2.15 LINK OE1 GLU A 133 CD CD A 204 1555 1555 2.55 LINK OE2 GLU A 133 CD CD A 204 1555 1555 2.31 LINK OE1 GLU A 135 CD CD A 202 1555 1555 2.30 LINK OE2 GLU A 135 CD CD A 203 1555 1555 2.22 LINK OE1 GLU A 136 CD CD A 204 1555 1555 2.38 LINK OE2 GLU A 136 CD CD A 204 1555 1555 2.45 LINK ND1 HIS A 138 CD CD A 203 1555 1555 2.40 LINK OE1 GLU A 140 CD CD A 206 1555 1555 2.41 LINK OE2 GLU A 140 CD CD A 206 1555 1555 2.43 LINK OE1 GLU A 143 CD CD A 206 1555 1555 2.54 LINK OE1 GLU A 161 CD CD A 203 1555 1555 1.90 LINK OE2 GLU A 161 CD CD A 203 1555 1555 2.60 LINK CD CD A 202 O HOH A 334 1555 1555 2.03 LINK CD CD A 203 O HOH A 334 1555 1555 2.58 LINK CD CD A 204 O HOH A 377 1555 1555 2.32 LINK CD CD A 205 O HOH A 339 1555 2556 2.41 LINK CD CD A 206 O HOH A 349 1555 2655 2.53 LINK CD CD A 206 O HOH A 380 1555 2645 2.48 LINK CD CD A 208 O HOH A 374 1555 2656 2.28 LINK CD CD A 208 O HOH A 375 1555 1555 2.56 LINK CD CD A 208 O HOH A 386 1555 1555 2.57 SITE 1 AC1 19 GLN A 7 HIS A 9 GLN A 10 PHE A 16 SITE 2 AC1 19 LEU A 85 GLY A 92 GLN A 93 LEU A 95 SITE 3 AC1 19 TRP A 96 ARG A 107 HIS A 110 GLN A 111 SITE 4 AC1 19 ALA A 114 LEU A 185 GLN A 186 GLY A 189 SITE 5 AC1 19 GLN A 190 LEU A 192 TRP A 193 SITE 1 AC2 6 GLU A 34 GLU A 64 HIS A 67 GLU A 135 SITE 2 AC2 6 CD A 203 HOH A 334 SITE 1 AC3 6 GLU A 64 GLU A 135 HIS A 138 GLU A 161 SITE 2 AC3 6 CD A 202 HOH A 334 SITE 1 AC4 3 GLU A 133 GLU A 136 HOH A 377 SITE 1 AC5 2 GLU A 94 GLN A 97 SITE 1 AC6 2 GLU A 140 GLU A 143 SITE 1 AC7 2 GLU A 43 GLU A 46 SITE 1 AC8 3 GLU A 8 HOH A 375 HOH A 386 CRYST1 44.485 25.876 73.708 90.00 103.64 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022479 0.000000 0.005455 0.00000 SCALE2 0.000000 0.038646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013961 0.00000