HEADER OXIDOREDUCTASE 21-APR-17 5VKB TITLE ETHYLENE FORMING ENZYME IN COMPLEX WITH MANGANESE, 2-OXOGLUTARATE AND TITLE 2 ARGININAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT ETHYLENE/SUCCINATE-FORMING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETHYLENE-FORMING ENZYME,2-OXOGLUTARATE DIOXYGENASE COMPND 5 (ETHYLENE-FORMING),2-OXOGLUTARATE/L-ARGININE COMPND 6 MONOOXYGENASE/DECARBOXYLASE (SUCCINATE-FORMING); COMPND 7 EC: 1.13.12.19,1.14.11.34; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SAVASTANOI PV. PHASEOLICOLA; SOURCE 3 ORGANISM_TAXID: 319; SOURCE 4 GENE: EFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS 2-OXOGLUTARATE, ARGININAMIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FELLNER,S.MARTINEZ,J.HU,R.P.HAUSINGER REVDAT 4 15-NOV-23 5VKB 1 REMARK REVDAT 3 04-OCT-23 5VKB 1 LINK REVDAT 2 13-SEP-17 5VKB 1 JRNL REVDAT 1 16-AUG-17 5VKB 0 JRNL AUTH S.MARTINEZ,M.FELLNER,C.Q.HERR,A.RITCHIE,J.HU,R.P.HAUSINGER JRNL TITL STRUCTURES AND MECHANISMS OF THE NON-HEME FE(II)- AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT ETHYLENE-FORMING ENZYME: SUBSTRATE JRNL TITL 3 BINDING CREATES A TWIST. JRNL REF J. AM. CHEM. SOC. V. 139 11980 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28780854 JRNL DOI 10.1021/JACS.7B06186 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 122596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 6473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7015 - 3.5377 0.95 7445 404 0.1471 0.1501 REMARK 3 2 3.5377 - 2.8083 1.00 7798 394 0.1427 0.1640 REMARK 3 3 2.8083 - 2.4533 1.00 7718 507 0.1384 0.1580 REMARK 3 4 2.4533 - 2.2291 1.00 7835 378 0.1298 0.1435 REMARK 3 5 2.2291 - 2.0693 1.00 7859 404 0.1270 0.1475 REMARK 3 6 2.0693 - 1.9473 1.00 7801 406 0.1285 0.1450 REMARK 3 7 1.9473 - 1.8498 1.00 7790 429 0.1239 0.1484 REMARK 3 8 1.8498 - 1.7693 1.00 7775 468 0.1296 0.1499 REMARK 3 9 1.7693 - 1.7011 1.00 7711 475 0.1317 0.1619 REMARK 3 10 1.7011 - 1.6424 1.00 7863 377 0.1298 0.1489 REMARK 3 11 1.6424 - 1.5911 1.00 7797 434 0.1268 0.1383 REMARK 3 12 1.5911 - 1.5456 1.00 7802 416 0.1235 0.1345 REMARK 3 13 1.5456 - 1.5049 1.00 7756 441 0.1298 0.1589 REMARK 3 14 1.5049 - 1.4682 1.00 7785 421 0.1354 0.1439 REMARK 3 15 1.4682 - 1.4348 1.00 7869 377 0.1388 0.1790 REMARK 3 16 1.4348 - 1.4043 1.00 7751 496 0.1479 0.1762 REMARK 3 17 1.4043 - 1.3762 1.00 7686 440 0.1514 0.1805 REMARK 3 18 1.3762 - 1.3502 1.00 7913 361 0.1590 0.1770 REMARK 3 19 1.3502 - 1.3261 1.00 7923 371 0.1625 0.1638 REMARK 3 20 1.3261 - 1.3036 1.00 7790 373 0.1675 0.1709 REMARK 3 21 1.3036 - 1.2826 1.00 7740 449 0.1774 0.2117 REMARK 3 22 1.2826 - 1.2629 1.00 7867 420 0.1884 0.1918 REMARK 3 23 1.2629 - 1.2443 1.00 7758 388 0.1973 0.2067 REMARK 3 24 1.2443 - 1.2268 1.00 7924 363 0.2024 0.2154 REMARK 3 25 1.2268 - 1.2102 1.00 7760 385 0.2098 0.2463 REMARK 3 26 1.2102 - 1.1945 1.00 7865 409 0.2181 0.2389 REMARK 3 27 1.1945 - 1.1795 1.00 7734 456 0.2272 0.2470 REMARK 3 28 1.1795 - 1.1653 0.99 7772 402 0.2394 0.2494 REMARK 3 29 1.1653 - 1.1518 0.98 7562 434 0.2604 0.2833 REMARK 3 30 1.1518 - 1.1388 0.90 7056 409 0.2723 0.2925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3002 REMARK 3 ANGLE : 0.957 4089 REMARK 3 CHIRALITY : 0.075 429 REMARK 3 PLANARITY : 0.007 549 REMARK 3 DIHEDRAL : 14.613 1112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.139 REMARK 200 RESOLUTION RANGE LOW (A) : 48.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5V2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 UL 72 MG/ML SELENOMETHIONINE REMARK 280 CONTAINING EFE (9 MM MANGANESE CHLORIDE, 25 MM HEPES PH 8.0, 1 REMARK 280 MM TCEP) WAS MIXED WITH 0.5 UL RESERVOIR SOLUTION OF 10 MM REMARK 280 ARGININAMIDE, 0.2 UL OF 100 MM 2-OXOGLUTARATE. THE SITTING DROP REMARK 280 RESERVOIR OF 200 UL CONTAINED 20% W/V POLYETHYLENE GLYCOL 6,000, REMARK 280 0.1 M TRIS PH 8.0 , 0.2 M LITHIUM CHLORIDE. THE CRYSTAL WAS REMARK 280 SOAKED FOR ABOUT A MINUTE IN 25% W/V POLYETHYLENE GLYCOL 400, 75% REMARK 280 RESERVOIR SOLUTION BEFORE FREEZING IT., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.24100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.90550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.87150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.90550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.24100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.87150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 739 O HOH A 821 1.96 REMARK 500 O HOH A 949 O HOH A 960 1.96 REMARK 500 O HOH A 721 O HOH A 806 2.03 REMARK 500 O HOH A 595 O HOH A 919 2.04 REMARK 500 O HOH A 694 O HOH A 790 2.07 REMARK 500 O HOH A 872 O HOH A 960 2.07 REMARK 500 O HOH A 816 O HOH A 860 2.09 REMARK 500 O HOH A 878 O HOH A 888 2.09 REMARK 500 O HOH A 591 O HOH A 903 2.16 REMARK 500 O HOH A 681 O HOH A 957 2.16 REMARK 500 O HOH A 764 O HOH A 939 2.18 REMARK 500 O HOH A 543 O HOH A 849 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 64 OH TYR A 342 3555 2.01 REMARK 500 O HOH A 701 O HOH A 935 4445 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 167 49.54 -81.84 REMARK 500 GLU A 225 49.84 -141.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 191 TYR A 192 -147.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 189 NE2 REMARK 620 2 ASP A 191 OD1 86.0 REMARK 620 3 ASP A 191 OD2 127.5 54.3 REMARK 620 4 HIS A 268 NE2 85.9 111.5 80.2 REMARK 620 5 AKG A 402 O1 105.2 95.5 110.8 151.6 REMARK 620 6 AKG A 402 O5 102.4 166.7 124.0 79.7 72.4 REMARK 620 7 HOH A 501 O 168.7 104.5 58.8 86.3 78.4 68.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AAR A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VKA RELATED DB: PDB DBREF 5VKB A 1 350 UNP P32021 EFE_PSESH 1 350 SEQADV 5VKB SER A -1 UNP P32021 EXPRESSION TAG SEQADV 5VKB HIS A 0 UNP P32021 EXPRESSION TAG SEQRES 1 A 352 SER HIS MSE THR ASN LEU GLN THR PHE GLU LEU PRO THR SEQRES 2 A 352 GLU VAL THR GLY CYS ALA ALA ASP ILE SER LEU GLY ARG SEQRES 3 A 352 ALA LEU ILE GLN ALA TRP GLN LYS ASP GLY ILE PHE GLN SEQRES 4 A 352 ILE LYS THR ASP SER GLU GLN ASP ARG LYS THR GLN GLU SEQRES 5 A 352 ALA MSE ALA ALA SER LYS GLN PHE CYS LYS GLU PRO LEU SEQRES 6 A 352 THR PHE LYS SER SER CYS VAL SER ASP LEU THR TYR SER SEQRES 7 A 352 GLY TYR VAL ALA SER GLY GLU GLU VAL THR ALA GLY LYS SEQRES 8 A 352 PRO ASP PHE PRO GLU ILE PHE THR VAL CYS LYS ASP LEU SEQRES 9 A 352 SER VAL GLY ASP GLN ARG VAL LYS ALA GLY TRP PRO CYS SEQRES 10 A 352 HIS GLY PRO VAL PRO TRP PRO ASN ASN THR TYR GLN LYS SEQRES 11 A 352 SER MSE LYS THR PHE MSE GLU GLU LEU GLY LEU ALA GLY SEQRES 12 A 352 GLU ARG LEU LEU LYS LEU THR ALA LEU GLY PHE GLU LEU SEQRES 13 A 352 PRO ILE ASN THR PHE THR ASP LEU THR ARG ASP GLY TRP SEQRES 14 A 352 HIS HIS MSE ARG VAL LEU ARG PHE PRO PRO GLN THR SER SEQRES 15 A 352 THR LEU SER ARG GLY ILE GLY ALA HIS THR ASP TYR GLY SEQRES 16 A 352 LEU LEU VAL ILE ALA ALA GLN ASP ASP VAL GLY GLY LEU SEQRES 17 A 352 TYR ILE ARG PRO PRO VAL GLU GLY GLU LYS ARG ASN ARG SEQRES 18 A 352 ASN TRP LEU PRO GLY GLU SER SER ALA GLY MSE PHE GLU SEQRES 19 A 352 HIS ASP GLU PRO TRP THR PHE VAL THR PRO THR PRO GLY SEQRES 20 A 352 VAL TRP THR VAL PHE PRO GLY ASP ILE LEU GLN PHE MSE SEQRES 21 A 352 THR GLY GLY GLN LEU LEU SER THR PRO HIS LYS VAL LYS SEQRES 22 A 352 LEU ASN THR ARG GLU ARG PHE ALA CYS ALA TYR PHE HIS SEQRES 23 A 352 GLU PRO ASN PHE GLU ALA SER ALA TYR PRO LEU PHE GLU SEQRES 24 A 352 PRO SER ALA ASN GLU ARG ILE HIS TYR GLY GLU HIS PHE SEQRES 25 A 352 THR ASN MSE PHE MSE ARG CYS TYR PRO ASP ARG ILE THR SEQRES 26 A 352 THR GLN ARG ILE ASN LYS GLU ASN ARG LEU ALA HIS LEU SEQRES 27 A 352 GLU ASP LEU LYS LYS TYR SER ASP THR ARG ALA THR GLY SEQRES 28 A 352 SER MODRES 5VKB MSE A 52 MET MODIFIED RESIDUE MODRES 5VKB MSE A 130 MET MODIFIED RESIDUE MODRES 5VKB MSE A 134 MET MODIFIED RESIDUE MODRES 5VKB MSE A 170 MET MODIFIED RESIDUE MODRES 5VKB MSE A 230 MET MODIFIED RESIDUE MODRES 5VKB MSE A 258 MET MODIFIED RESIDUE MODRES 5VKB MSE A 313 MET MODIFIED RESIDUE MODRES 5VKB MSE A 315 MET MODIFIED RESIDUE HET MSE A 52 17 HET MSE A 130 17 HET MSE A 134 17 HET MSE A 170 17 HET MSE A 230 17 HET MSE A 258 17 HET MSE A 313 17 HET MSE A 315 17 HET MN A 401 1 HET AKG A 402 14 HET AAR A 403 56 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM AAR ARGININEAMIDE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 MN MN 2+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 AAR C6 H16 N5 O 1+ FORMUL 5 HOH *472(H2 O) HELIX 1 AA1 CYS A 16 GLY A 34 1 19 HELIX 2 AA2 ASP A 41 LYS A 60 1 20 HELIX 3 AA3 PRO A 62 CYS A 69 1 8 HELIX 4 AA4 ASP A 106 ALA A 111 1 6 HELIX 5 AA5 ASN A 123 PHE A 152 1 30 HELIX 6 AA6 PHE A 159 THR A 163 5 5 HELIX 7 AA7 GLY A 252 THR A 259 1 8 HELIX 8 AA8 TYR A 306 TYR A 318 1 13 HELIX 9 AA9 ARG A 321 GLU A 330 1 10 HELIX 10 AB1 ASN A 331 SER A 343 1 13 SHEET 1 AA1 8 THR A 6 PHE A 7 0 SHEET 2 AA1 8 PHE A 36 LYS A 39 1 O GLN A 37 N PHE A 7 SHEET 3 AA1 8 VAL A 246 PRO A 251 -1 O TRP A 247 N ILE A 38 SHEET 4 AA1 8 LEU A 195 GLN A 200 -1 N ALA A 198 O THR A 248 SHEET 5 AA1 8 ARG A 277 HIS A 284 -1 O TYR A 282 N ILE A 197 SHEET 6 AA1 8 HIS A 169 PHE A 175 -1 N HIS A 169 O PHE A 283 SHEET 7 AA1 8 GLU A 94 VAL A 98 -1 N VAL A 98 O MSE A 170 SHEET 8 AA1 8 GLY A 77 VAL A 79 -1 N GLY A 77 O THR A 97 SHEET 1 AA2 2 VAL A 85 THR A 86 0 SHEET 2 AA2 2 LYS A 89 PRO A 90 -1 O LYS A 89 N THR A 86 SHEET 1 AA3 4 ARG A 184 HIS A 189 0 SHEET 2 AA3 4 HIS A 268 LYS A 271 -1 O VAL A 270 N GLY A 185 SHEET 3 AA3 4 LEU A 206 ILE A 208 -1 N TYR A 207 O LYS A 269 SHEET 4 AA3 4 THR A 238 PHE A 239 -1 O THR A 238 N ILE A 208 SHEET 1 AA4 2 SER A 291 ALA A 292 0 SHEET 2 AA4 2 ILE A 304 HIS A 305 -1 O ILE A 304 N ALA A 292 LINK C ALA A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ALA A 53 1555 1555 1.33 LINK C SER A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ALYS A 131 1555 1555 1.34 LINK C MSE A 130 N BLYS A 131 1555 1555 1.34 LINK C PHE A 133 N MSE A 134 1555 1555 1.32 LINK C MSE A 134 N GLU A 135 1555 1555 1.33 LINK C HIS A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ARG A 171 1555 1555 1.33 LINK C GLY A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N PHE A 231 1555 1555 1.34 LINK C PHE A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N THR A 259 1555 1555 1.34 LINK C ASN A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N PHE A 314 1555 1555 1.33 LINK C PHE A 314 N MSE A 315 1555 1555 1.32 LINK C MSE A 315 N ARG A 316 1555 1555 1.34 LINK NE2 HIS A 189 MN MN A 401 1555 1555 2.20 LINK OD1 ASP A 191 MN MN A 401 1555 1555 2.46 LINK OD2 ASP A 191 MN MN A 401 1555 1555 2.30 LINK NE2 HIS A 268 MN MN A 401 1555 1555 2.17 LINK MN MN A 401 O1 AKG A 402 1555 1555 2.09 LINK MN MN A 401 O5 AKG A 402 1555 1555 2.37 LINK MN MN A 401 O HOH A 501 1555 1555 2.11 CISPEP 1 GLU A 235 PRO A 236 0 1.12 SITE 1 AC1 5 HIS A 189 ASP A 191 HIS A 268 AKG A 402 SITE 2 AC1 5 HOH A 501 SITE 1 AC2 13 ARG A 171 LEU A 173 PHE A 175 HIS A 189 SITE 2 AC2 13 ASP A 191 HIS A 268 VAL A 270 ARG A 277 SITE 3 AC2 13 ALA A 279 MN A 401 AAR A 403 HOH A 501 SITE 4 AC2 13 HOH A 598 SITE 1 AC3 13 GLU A 84 VAL A 85 THR A 86 ARG A 171 SITE 2 AC3 13 HIS A 189 ASP A 191 TYR A 192 PHE A 314 SITE 3 AC3 13 ARG A 316 CYS A 317 AKG A 402 HOH A 521 SITE 4 AC3 13 HOH A 607 CRYST1 48.482 81.743 87.811 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011388 0.00000