data_5VKM # _entry.id 5VKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5VKM WWPDB D_1000227578 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5VKJ unspecified PDB . 5VKK unspecified PDB . 5VL3 unspecified EMDB . EMD-8704 'other EM volume' EMDB . EMD-8705 'other EM volume' SASBDB . SASDC76 'associated SAS data' SASBDB . SASDC86 'associated SAS data' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VKM _pdbx_database_status.recvd_initial_deposition_date 2017-04-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Julien, J.P.' 1 0000-0001-7602-3995 'Ereno-Orbea, J.' 2 0000-0001-8982-1857 'Sicard, T.' 3 0000-0001-5921-7034 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 764 _citation.page_last 764 _citation.title 'Molecular basis of human CD22 function and therapeutic targeting.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-017-00836-6 _citation.pdbx_database_id_PubMed 28970495 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ereno-Orbea, J.' 1 ? primary 'Sicard, T.' 2 ? primary 'Cui, H.' 3 ? primary 'Mazhab-Jafari, M.T.' 4 ? primary 'Benlekbir, S.' 5 ? primary 'Guarne, A.' 6 ? primary 'Rubinstein, J.L.' 7 ? primary 'Julien, J.P.' 8 ? # _cell.entry_id 5VKM _cell.length_a 124.283 _cell.length_b 57.912 _cell.length_c 48.081 _cell.angle_alpha 90.00 _cell.angle_beta 106.99 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VKM _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell receptor CD22' 36660.293 1 ? N67A,N112A,N135A,N164A,N231A 'Extracellular domain residues 20-330' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 3 branched man 'N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose' 471.411 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 69 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'B-lymphocyte cell adhesion molecule,BL-CAM,Sialic acid-binding Ig-like lectin 2,Siglec-2,T-cell surface antigen Leu-14' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETGDSSKWVFEHPETLYAWEGACVWIPCTYRALDGDLESFILFHNPEYNKATSKFDGTRLYESTKDGKVPSEQKRVQFLG DKNKNCTLSIHPVHLADSGQLGLRMESKTEKWMERIHLAVSERPFPPHIQLPPEIQESQEVTLTCLLAFSCYGYPIQLQW LLEGVPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKFLSADTVQLNVKHTPKLEIKVTPSDAIVR EGDSVTMTCEVSSSNPEYTTVSWLKDGTSLKKQNTFTLNLREVTKDQSGKYCCQVSNDVGPGRSEEVFLQVQYAGGTKHH HHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGDSSKWVFEHPETLYAWEGACVWIPCTYRALDGDLESFILFHNPEYNKATSKFDGTRLYESTKDGKVPSEQKRVQFLG DKNKNCTLSIHPVHLADSGQLGLRMESKTEKWMERIHLAVSERPFPPHIQLPPEIQESQEVTLTCLLAFSCYGYPIQLQW LLEGVPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKFLSADTVQLNVKHTPKLEIKVTPSDAIVR EGDSVTMTCEVSSSNPEYTTVSWLKDGTSLKKQNTFTLNLREVTKDQSGKYCCQVSNDVGPGRSEEVFLQVQYAGGTKHH HHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 ASP n 1 5 SER n 1 6 SER n 1 7 LYS n 1 8 TRP n 1 9 VAL n 1 10 PHE n 1 11 GLU n 1 12 HIS n 1 13 PRO n 1 14 GLU n 1 15 THR n 1 16 LEU n 1 17 TYR n 1 18 ALA n 1 19 TRP n 1 20 GLU n 1 21 GLY n 1 22 ALA n 1 23 CYS n 1 24 VAL n 1 25 TRP n 1 26 ILE n 1 27 PRO n 1 28 CYS n 1 29 THR n 1 30 TYR n 1 31 ARG n 1 32 ALA n 1 33 LEU n 1 34 ASP n 1 35 GLY n 1 36 ASP n 1 37 LEU n 1 38 GLU n 1 39 SER n 1 40 PHE n 1 41 ILE n 1 42 LEU n 1 43 PHE n 1 44 HIS n 1 45 ASN n 1 46 PRO n 1 47 GLU n 1 48 TYR n 1 49 ASN n 1 50 LYS n 1 51 ALA n 1 52 THR n 1 53 SER n 1 54 LYS n 1 55 PHE n 1 56 ASP n 1 57 GLY n 1 58 THR n 1 59 ARG n 1 60 LEU n 1 61 TYR n 1 62 GLU n 1 63 SER n 1 64 THR n 1 65 LYS n 1 66 ASP n 1 67 GLY n 1 68 LYS n 1 69 VAL n 1 70 PRO n 1 71 SER n 1 72 GLU n 1 73 GLN n 1 74 LYS n 1 75 ARG n 1 76 VAL n 1 77 GLN n 1 78 PHE n 1 79 LEU n 1 80 GLY n 1 81 ASP n 1 82 LYS n 1 83 ASN n 1 84 LYS n 1 85 ASN n 1 86 CYS n 1 87 THR n 1 88 LEU n 1 89 SER n 1 90 ILE n 1 91 HIS n 1 92 PRO n 1 93 VAL n 1 94 HIS n 1 95 LEU n 1 96 ALA n 1 97 ASP n 1 98 SER n 1 99 GLY n 1 100 GLN n 1 101 LEU n 1 102 GLY n 1 103 LEU n 1 104 ARG n 1 105 MET n 1 106 GLU n 1 107 SER n 1 108 LYS n 1 109 THR n 1 110 GLU n 1 111 LYS n 1 112 TRP n 1 113 MET n 1 114 GLU n 1 115 ARG n 1 116 ILE n 1 117 HIS n 1 118 LEU n 1 119 ALA n 1 120 VAL n 1 121 SER n 1 122 GLU n 1 123 ARG n 1 124 PRO n 1 125 PHE n 1 126 PRO n 1 127 PRO n 1 128 HIS n 1 129 ILE n 1 130 GLN n 1 131 LEU n 1 132 PRO n 1 133 PRO n 1 134 GLU n 1 135 ILE n 1 136 GLN n 1 137 GLU n 1 138 SER n 1 139 GLN n 1 140 GLU n 1 141 VAL n 1 142 THR n 1 143 LEU n 1 144 THR n 1 145 CYS n 1 146 LEU n 1 147 LEU n 1 148 ALA n 1 149 PHE n 1 150 SER n 1 151 CYS n 1 152 TYR n 1 153 GLY n 1 154 TYR n 1 155 PRO n 1 156 ILE n 1 157 GLN n 1 158 LEU n 1 159 GLN n 1 160 TRP n 1 161 LEU n 1 162 LEU n 1 163 GLU n 1 164 GLY n 1 165 VAL n 1 166 PRO n 1 167 MET n 1 168 ARG n 1 169 GLN n 1 170 ALA n 1 171 ALA n 1 172 VAL n 1 173 THR n 1 174 SER n 1 175 THR n 1 176 SER n 1 177 LEU n 1 178 THR n 1 179 ILE n 1 180 LYS n 1 181 SER n 1 182 VAL n 1 183 PHE n 1 184 THR n 1 185 ARG n 1 186 SER n 1 187 GLU n 1 188 LEU n 1 189 LYS n 1 190 PHE n 1 191 SER n 1 192 PRO n 1 193 GLN n 1 194 TRP n 1 195 SER n 1 196 HIS n 1 197 HIS n 1 198 GLY n 1 199 LYS n 1 200 ILE n 1 201 VAL n 1 202 THR n 1 203 CYS n 1 204 GLN n 1 205 LEU n 1 206 GLN n 1 207 ASP n 1 208 ALA n 1 209 ASP n 1 210 GLY n 1 211 LYS n 1 212 PHE n 1 213 LEU n 1 214 SER n 1 215 ALA n 1 216 ASP n 1 217 THR n 1 218 VAL n 1 219 GLN n 1 220 LEU n 1 221 ASN n 1 222 VAL n 1 223 LYS n 1 224 HIS n 1 225 THR n 1 226 PRO n 1 227 LYS n 1 228 LEU n 1 229 GLU n 1 230 ILE n 1 231 LYS n 1 232 VAL n 1 233 THR n 1 234 PRO n 1 235 SER n 1 236 ASP n 1 237 ALA n 1 238 ILE n 1 239 VAL n 1 240 ARG n 1 241 GLU n 1 242 GLY n 1 243 ASP n 1 244 SER n 1 245 VAL n 1 246 THR n 1 247 MET n 1 248 THR n 1 249 CYS n 1 250 GLU n 1 251 VAL n 1 252 SER n 1 253 SER n 1 254 SER n 1 255 ASN n 1 256 PRO n 1 257 GLU n 1 258 TYR n 1 259 THR n 1 260 THR n 1 261 VAL n 1 262 SER n 1 263 TRP n 1 264 LEU n 1 265 LYS n 1 266 ASP n 1 267 GLY n 1 268 THR n 1 269 SER n 1 270 LEU n 1 271 LYS n 1 272 LYS n 1 273 GLN n 1 274 ASN n 1 275 THR n 1 276 PHE n 1 277 THR n 1 278 LEU n 1 279 ASN n 1 280 LEU n 1 281 ARG n 1 282 GLU n 1 283 VAL n 1 284 THR n 1 285 LYS n 1 286 ASP n 1 287 GLN n 1 288 SER n 1 289 GLY n 1 290 LYS n 1 291 TYR n 1 292 CYS n 1 293 CYS n 1 294 GLN n 1 295 VAL n 1 296 SER n 1 297 ASN n 1 298 ASP n 1 299 VAL n 1 300 GLY n 1 301 PRO n 1 302 GLY n 1 303 ARG n 1 304 SER n 1 305 GLU n 1 306 GLU n 1 307 VAL n 1 308 PHE n 1 309 LEU n 1 310 GLN n 1 311 VAL n 1 312 GLN n 1 313 TYR n 1 314 ALA n 1 315 GLY n 1 316 GLY n 1 317 THR n 1 318 LYS n 1 319 HIS n 1 320 HIS n 1 321 HIS n 1 322 HIS n 1 323 HIS n 1 324 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 324 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CD22, SIGLEC2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD22_HUMAN _struct_ref.pdbx_db_accession P20273 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DSSKWVFEHPETLYAWEGACVWIPCTYRALDGDLESFILFHNPEYNKNTSKFDGTRLYESTKDGKVPSEQKRVQFLGDKN KNCTLSIHPVHLNDSGQLGLRMESKTEKWMERIHLNVSERPFPPHIQLPPEIQESQEVTLTCLLNFSCYGYPIQLQWLLE GVPMRQAAVTSTSLTIKSVFTRSELKFSPQWSHHGKIVTCQLQDADGKFLSNDTVQLNVKHTPKLEIKVTPSDAIVREGD SVTMTCEVSSSNPEYTTVSWLKDGTSLKKQNTFTLNLREVTKDQSGKYCCQVSNDVGPGRSEEVFLQVQYA ; _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VKM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 314 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20273 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 330 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 330 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VKM GLU A 1 ? UNP P20273 ? ? 'expression tag' 17 1 1 5VKM THR A 2 ? UNP P20273 ? ? 'expression tag' 18 2 1 5VKM GLY A 3 ? UNP P20273 ? ? 'expression tag' 19 3 1 5VKM ALA A 51 ? UNP P20273 ASN 67 'engineered mutation' 67 4 1 5VKM ALA A 96 ? UNP P20273 ASN 112 'engineered mutation' 112 5 1 5VKM ALA A 119 ? UNP P20273 ASN 135 'engineered mutation' 135 6 1 5VKM ALA A 148 ? UNP P20273 ASN 164 'engineered mutation' 164 7 1 5VKM ALA A 215 ? UNP P20273 ASN 231 'engineered mutation' 231 8 1 5VKM GLY A 315 ? UNP P20273 ? ? 'expression tag' 331 9 1 5VKM GLY A 316 ? UNP P20273 ? ? 'expression tag' 332 10 1 5VKM THR A 317 ? UNP P20273 ? ? 'expression tag' 333 11 1 5VKM LYS A 318 ? UNP P20273 ? ? 'expression tag' 334 12 1 5VKM HIS A 319 ? UNP P20273 ? ? 'expression tag' 335 13 1 5VKM HIS A 320 ? UNP P20273 ? ? 'expression tag' 336 14 1 5VKM HIS A 321 ? UNP P20273 ? ? 'expression tag' 337 15 1 5VKM HIS A 322 ? UNP P20273 ? ? 'expression tag' 338 16 1 5VKM HIS A 323 ? UNP P20273 ? ? 'expression tag' 339 17 1 5VKM HIS A 324 ? UNP P20273 ? ? 'expression tag' 340 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' ? 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VKM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 4000, 0.2 M lithium chloride and 0.1 M Tris pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VKM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 36.8860 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16865 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.8 _reflns.pdbx_Rmerge_I_obs 0.106 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.20 2.28 ? 1.6 ? ? ? ? ? 99.8 ? ? ? ? 0.5495 ? ? ? ? ? ? ? ? 3.8 ? ? ? ? ? 0.3331 ? 1 1 0.597 ? 2.790 2.940 ? 8.400 ? ? ? ? 1183 99.700 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 3.803 ? ? ? ? 0.192 ? ? 2 1 0.983 ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5VKM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16680 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.886 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.2147 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2103 _refine.ls_R_factor_R_free 0.2540 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.01 _refine.ls_number_reflns_R_free 1669 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 5VKJ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.35 _refine.pdbx_overall_phase_error 31.58 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2436 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 99 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 2604 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 36.886 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 2603 'X-RAY DIFFRACTION' ? f_angle_d 0.608 ? ? 3542 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 10.569 ? ? 1557 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 412 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 437 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2000 2.2647 1229 0.3367 100.00 0.3718 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.2647 2.3378 1256 0.3323 100.00 0.3945 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.3378 2.4214 1248 0.3141 100.00 0.3784 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.4214 2.5183 1238 0.2855 100.00 0.3612 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.5183 2.6329 1240 0.2653 100.00 0.3121 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.6329 2.7716 1249 0.2472 100.00 0.3285 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.7716 2.9452 1236 0.2635 100.00 0.3071 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.9452 3.1725 1250 0.2433 100.00 0.3161 . . 139 . . . . 'X-RAY DIFFRACTION' . 3.1725 3.4915 1257 0.2130 100.00 0.2634 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.4915 3.9963 1263 0.1927 100.00 0.2149 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.9963 5.0328 1256 0.1578 99.00 0.1942 . . 139 . . . . 'X-RAY DIFFRACTION' . 5.0328 36.8915 1289 0.1576 99.00 0.1907 . . 144 . . . . # _struct.entry_id 5VKM _struct.title 'Crystal structure of human CD22 Ig domains 1-3 in complex with alpha 2-6 sialyllactose' _struct.pdbx_descriptor 'B-cell receptor CD22' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VKM _struct_keywords.text 'Siglec, Sialic acid, carbohydrate binding protein, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 94 ? SER A 98 ? HIS A 110 SER A 114 5 ? 5 HELX_P HELX_P2 AA2 GLN A 193 ? HIS A 197 ? GLN A 209 HIS A 213 5 ? 5 HELX_P HELX_P3 AA3 THR A 284 ? SER A 288 ? THR A 300 SER A 304 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 151 SG ? ? A CYS 39 A CYS 167 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 86 SG ? ? A CYS 44 A CYS 102 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? A CYS 145 SG ? ? ? 1_555 A CYS 203 SG ? ? A CYS 161 A CYS 219 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? A CYS 249 SG ? ? ? 1_555 A CYS 293 SG ? ? A CYS 265 A CYS 309 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale one ? A ASN 85 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 101 B NAG 1 1_555 ? ? ? ? ? ? ? 1.440 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale4 covale one ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale5 covale one ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale6 covale one ? C GAL . O6 ? ? ? 1_555 C SIA . C2 ? ? C GAL 1 C SIA 2 1_555 ? ? ? ? ? ? ? 1.374 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 91 A . ? HIS 107 A PRO 92 A ? PRO 108 A 1 0.12 2 THR 233 A . ? THR 249 A PRO 234 A ? PRO 250 A 1 1.89 3 ASN 255 A . ? ASN 271 A PRO 256 A ? PRO 272 A 1 0.37 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 5 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 8 ? GLU A 11 ? TRP A 24 GLU A 27 AA1 2 THR A 29 ? ALA A 32 ? THR A 45 ALA A 48 AA2 1 THR A 15 ? TRP A 19 ? THR A 31 TRP A 35 AA2 2 LYS A 111 ? SER A 121 ? LYS A 127 SER A 137 AA2 3 GLY A 99 ? SER A 107 ? GLY A 115 SER A 123 AA2 4 LEU A 37 ? ASN A 49 ? LEU A 53 ASN A 65 AA2 5 LYS A 54 ? GLU A 62 ? LYS A 70 GLU A 78 AA3 1 VAL A 24 ? ILE A 26 ? VAL A 40 ILE A 42 AA3 2 LEU A 88 ? ILE A 90 ? LEU A 104 ILE A 106 AA3 3 VAL A 76 ? PHE A 78 ? VAL A 92 PHE A 94 AA4 1 HIS A 128 ? GLN A 130 ? HIS A 144 GLN A 146 AA4 2 VAL A 141 ? LEU A 147 ? VAL A 157 LEU A 163 AA4 3 VAL A 182 ? PHE A 190 ? VAL A 198 PHE A 206 AA4 4 ALA A 171 ? LEU A 177 ? ALA A 187 LEU A 193 AA5 1 ILE A 135 ? GLN A 136 ? ILE A 151 GLN A 152 AA5 2 VAL A 222 ? THR A 233 ? VAL A 238 THR A 249 AA5 3 VAL A 245 ? ASN A 255 ? VAL A 261 ASN A 271 AA5 4 THR A 277 ? LEU A 280 ? THR A 293 LEU A 296 AA6 1 VAL A 165 ? PRO A 166 ? VAL A 181 PRO A 182 AA6 2 ILE A 156 ? LEU A 162 ? ILE A 172 LEU A 178 AA6 3 ILE A 200 ? ASP A 207 ? ILE A 216 ASP A 223 AA6 4 PHE A 212 ? GLN A 219 ? PHE A 228 GLN A 235 AA7 1 ILE A 238 ? ARG A 240 ? ILE A 254 ARG A 256 AA7 2 VAL A 307 ? GLN A 312 ? VAL A 323 GLN A 328 AA7 3 GLY A 289 ? SER A 296 ? GLY A 305 SER A 312 AA7 4 THR A 260 ? LYS A 265 ? THR A 276 LYS A 281 AA7 5 THR A 268 ? SER A 269 ? THR A 284 SER A 285 AA8 1 ILE A 238 ? ARG A 240 ? ILE A 254 ARG A 256 AA8 2 VAL A 307 ? GLN A 312 ? VAL A 323 GLN A 328 AA8 3 GLY A 289 ? SER A 296 ? GLY A 305 SER A 312 AA8 4 PRO A 301 ? ARG A 303 ? PRO A 317 ARG A 319 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 11 ? N GLU A 27 O THR A 29 ? O THR A 45 AA2 1 2 N LEU A 16 ? N LEU A 32 O ALA A 119 ? O ALA A 135 AA2 2 3 O TRP A 112 ? O TRP A 128 N MET A 105 ? N MET A 121 AA2 3 4 O GLN A 100 ? O GLN A 116 N ASN A 45 ? N ASN A 61 AA2 4 5 N GLU A 47 ? N GLU A 63 O ASP A 56 ? O ASP A 72 AA3 1 2 N ILE A 26 ? N ILE A 42 O LEU A 88 ? O LEU A 104 AA3 2 3 O SER A 89 ? O SER A 105 N GLN A 77 ? N GLN A 93 AA4 1 2 N GLN A 130 ? N GLN A 146 O THR A 144 ? O THR A 160 AA4 2 3 N CYS A 145 ? N CYS A 161 O SER A 186 ? O SER A 202 AA4 3 4 O ARG A 185 ? O ARG A 201 N SER A 174 ? N SER A 190 AA5 1 2 N ILE A 135 ? N ILE A 151 O LYS A 223 ? O LYS A 239 AA5 2 3 N LYS A 227 ? N LYS A 243 O SER A 252 ? O SER A 268 AA5 3 4 N MET A 247 ? N MET A 263 O LEU A 278 ? O LEU A 294 AA6 1 2 O VAL A 165 ? O VAL A 181 N LEU A 162 ? N LEU A 178 AA6 2 3 N GLN A 159 ? N GLN A 175 O GLN A 204 ? O GLN A 220 AA6 3 4 N LEU A 205 ? N LEU A 221 O SER A 214 ? O SER A 230 AA7 1 2 N VAL A 239 ? N VAL A 255 O GLN A 312 ? O GLN A 328 AA7 2 3 O VAL A 307 ? O VAL A 323 N TYR A 291 ? N TYR A 307 AA7 3 4 O GLN A 294 ? O GLN A 310 N SER A 262 ? N SER A 278 AA7 4 5 N LYS A 265 ? N LYS A 281 O THR A 268 ? O THR A 284 AA8 1 2 N VAL A 239 ? N VAL A 255 O GLN A 312 ? O GLN A 328 AA8 2 3 O VAL A 307 ? O VAL A 323 N TYR A 291 ? N TYR A 307 AA8 3 4 N VAL A 295 ? N VAL A 311 O GLY A 302 ? O GLY A 318 # _atom_sites.entry_id 5VKM _atom_sites.fract_transf_matrix[1][1] 0.008046 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002459 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017268 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021748 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 17 ? ? ? A . n A 1 2 THR 2 18 ? ? ? A . n A 1 3 GLY 3 19 ? ? ? A . n A 1 4 ASP 4 20 ? ? ? A . n A 1 5 SER 5 21 ? ? ? A . n A 1 6 SER 6 22 ? ? ? A . n A 1 7 LYS 7 23 23 LYS LYS A . n A 1 8 TRP 8 24 24 TRP TRP A . n A 1 9 VAL 9 25 25 VAL VAL A . n A 1 10 PHE 10 26 26 PHE PHE A . n A 1 11 GLU 11 27 27 GLU GLU A . n A 1 12 HIS 12 28 28 HIS HIS A . n A 1 13 PRO 13 29 29 PRO PRO A . n A 1 14 GLU 14 30 30 GLU GLU A . n A 1 15 THR 15 31 31 THR THR A . n A 1 16 LEU 16 32 32 LEU LEU A . n A 1 17 TYR 17 33 33 TYR TYR A . n A 1 18 ALA 18 34 34 ALA ALA A . n A 1 19 TRP 19 35 35 TRP TRP A . n A 1 20 GLU 20 36 36 GLU GLU A . n A 1 21 GLY 21 37 37 GLY GLY A . n A 1 22 ALA 22 38 38 ALA ALA A . n A 1 23 CYS 23 39 39 CYS CYS A . n A 1 24 VAL 24 40 40 VAL VAL A . n A 1 25 TRP 25 41 41 TRP TRP A . n A 1 26 ILE 26 42 42 ILE ILE A . n A 1 27 PRO 27 43 43 PRO PRO A . n A 1 28 CYS 28 44 44 CYS CYS A . n A 1 29 THR 29 45 45 THR THR A . n A 1 30 TYR 30 46 46 TYR TYR A . n A 1 31 ARG 31 47 47 ARG ARG A . n A 1 32 ALA 32 48 48 ALA ALA A . n A 1 33 LEU 33 49 49 LEU LEU A . n A 1 34 ASP 34 50 50 ASP ASP A . n A 1 35 GLY 35 51 51 GLY GLY A . n A 1 36 ASP 36 52 52 ASP ASP A . n A 1 37 LEU 37 53 53 LEU LEU A . n A 1 38 GLU 38 54 54 GLU GLU A . n A 1 39 SER 39 55 55 SER SER A . n A 1 40 PHE 40 56 56 PHE PHE A . n A 1 41 ILE 41 57 57 ILE ILE A . n A 1 42 LEU 42 58 58 LEU LEU A . n A 1 43 PHE 43 59 59 PHE PHE A . n A 1 44 HIS 44 60 60 HIS HIS A . n A 1 45 ASN 45 61 61 ASN ASN A . n A 1 46 PRO 46 62 62 PRO PRO A . n A 1 47 GLU 47 63 63 GLU GLU A . n A 1 48 TYR 48 64 64 TYR TYR A . n A 1 49 ASN 49 65 65 ASN ASN A . n A 1 50 LYS 50 66 66 LYS LYS A . n A 1 51 ALA 51 67 67 ALA ALA A . n A 1 52 THR 52 68 68 THR THR A . n A 1 53 SER 53 69 69 SER SER A . n A 1 54 LYS 54 70 70 LYS LYS A . n A 1 55 PHE 55 71 71 PHE PHE A . n A 1 56 ASP 56 72 72 ASP ASP A . n A 1 57 GLY 57 73 73 GLY GLY A . n A 1 58 THR 58 74 74 THR THR A . n A 1 59 ARG 59 75 75 ARG ARG A . n A 1 60 LEU 60 76 76 LEU LEU A . n A 1 61 TYR 61 77 77 TYR TYR A . n A 1 62 GLU 62 78 78 GLU GLU A . n A 1 63 SER 63 79 79 SER SER A . n A 1 64 THR 64 80 80 THR THR A . n A 1 65 LYS 65 81 81 LYS LYS A . n A 1 66 ASP 66 82 82 ASP ASP A . n A 1 67 GLY 67 83 83 GLY GLY A . n A 1 68 LYS 68 84 ? ? ? A . n A 1 69 VAL 69 85 ? ? ? A . n A 1 70 PRO 70 86 86 PRO PRO A . n A 1 71 SER 71 87 87 SER SER A . n A 1 72 GLU 72 88 88 GLU GLU A . n A 1 73 GLN 73 89 89 GLN GLN A . n A 1 74 LYS 74 90 90 LYS LYS A . n A 1 75 ARG 75 91 91 ARG ARG A . n A 1 76 VAL 76 92 92 VAL VAL A . n A 1 77 GLN 77 93 93 GLN GLN A . n A 1 78 PHE 78 94 94 PHE PHE A . n A 1 79 LEU 79 95 95 LEU LEU A . n A 1 80 GLY 80 96 96 GLY GLY A . n A 1 81 ASP 81 97 97 ASP ASP A . n A 1 82 LYS 82 98 98 LYS LYS A . n A 1 83 ASN 83 99 99 ASN ASN A . n A 1 84 LYS 84 100 100 LYS LYS A . n A 1 85 ASN 85 101 101 ASN ASN A . n A 1 86 CYS 86 102 102 CYS CYS A . n A 1 87 THR 87 103 103 THR THR A . n A 1 88 LEU 88 104 104 LEU LEU A . n A 1 89 SER 89 105 105 SER SER A . n A 1 90 ILE 90 106 106 ILE ILE A . n A 1 91 HIS 91 107 107 HIS HIS A . n A 1 92 PRO 92 108 108 PRO PRO A . n A 1 93 VAL 93 109 109 VAL VAL A . n A 1 94 HIS 94 110 110 HIS HIS A . n A 1 95 LEU 95 111 111 LEU LEU A . n A 1 96 ALA 96 112 112 ALA ALA A . n A 1 97 ASP 97 113 113 ASP ASP A . n A 1 98 SER 98 114 114 SER SER A . n A 1 99 GLY 99 115 115 GLY GLY A . n A 1 100 GLN 100 116 116 GLN GLN A . n A 1 101 LEU 101 117 117 LEU LEU A . n A 1 102 GLY 102 118 118 GLY GLY A . n A 1 103 LEU 103 119 119 LEU LEU A . n A 1 104 ARG 104 120 120 ARG ARG A . n A 1 105 MET 105 121 121 MET MET A . n A 1 106 GLU 106 122 122 GLU GLU A . n A 1 107 SER 107 123 123 SER SER A . n A 1 108 LYS 108 124 124 LYS LYS A . n A 1 109 THR 109 125 125 THR THR A . n A 1 110 GLU 110 126 126 GLU GLU A . n A 1 111 LYS 111 127 127 LYS LYS A . n A 1 112 TRP 112 128 128 TRP TRP A . n A 1 113 MET 113 129 129 MET MET A . n A 1 114 GLU 114 130 130 GLU GLU A . n A 1 115 ARG 115 131 131 ARG ARG A . n A 1 116 ILE 116 132 132 ILE ILE A . n A 1 117 HIS 117 133 133 HIS HIS A . n A 1 118 LEU 118 134 134 LEU LEU A . n A 1 119 ALA 119 135 135 ALA ALA A . n A 1 120 VAL 120 136 136 VAL VAL A . n A 1 121 SER 121 137 137 SER SER A . n A 1 122 GLU 122 138 138 GLU GLU A . n A 1 123 ARG 123 139 139 ARG ARG A . n A 1 124 PRO 124 140 140 PRO PRO A . n A 1 125 PHE 125 141 141 PHE PHE A . n A 1 126 PRO 126 142 142 PRO PRO A . n A 1 127 PRO 127 143 143 PRO PRO A . n A 1 128 HIS 128 144 144 HIS HIS A . n A 1 129 ILE 129 145 145 ILE ILE A . n A 1 130 GLN 130 146 146 GLN GLN A . n A 1 131 LEU 131 147 147 LEU LEU A . n A 1 132 PRO 132 148 148 PRO PRO A . n A 1 133 PRO 133 149 149 PRO PRO A . n A 1 134 GLU 134 150 150 GLU GLU A . n A 1 135 ILE 135 151 151 ILE ILE A . n A 1 136 GLN 136 152 152 GLN GLN A . n A 1 137 GLU 137 153 153 GLU GLU A . n A 1 138 SER 138 154 154 SER SER A . n A 1 139 GLN 139 155 155 GLN GLN A . n A 1 140 GLU 140 156 156 GLU GLU A . n A 1 141 VAL 141 157 157 VAL VAL A . n A 1 142 THR 142 158 158 THR THR A . n A 1 143 LEU 143 159 159 LEU LEU A . n A 1 144 THR 144 160 160 THR THR A . n A 1 145 CYS 145 161 161 CYS CYS A . n A 1 146 LEU 146 162 162 LEU LEU A . n A 1 147 LEU 147 163 163 LEU LEU A . n A 1 148 ALA 148 164 164 ALA ALA A . n A 1 149 PHE 149 165 165 PHE PHE A . n A 1 150 SER 150 166 166 SER SER A . n A 1 151 CYS 151 167 167 CYS CYS A . n A 1 152 TYR 152 168 168 TYR TYR A . n A 1 153 GLY 153 169 169 GLY GLY A . n A 1 154 TYR 154 170 170 TYR TYR A . n A 1 155 PRO 155 171 171 PRO PRO A . n A 1 156 ILE 156 172 172 ILE ILE A . n A 1 157 GLN 157 173 173 GLN GLN A . n A 1 158 LEU 158 174 174 LEU LEU A . n A 1 159 GLN 159 175 175 GLN GLN A . n A 1 160 TRP 160 176 176 TRP TRP A . n A 1 161 LEU 161 177 177 LEU LEU A . n A 1 162 LEU 162 178 178 LEU LEU A . n A 1 163 GLU 163 179 179 GLU GLU A . n A 1 164 GLY 164 180 180 GLY GLY A . n A 1 165 VAL 165 181 181 VAL VAL A . n A 1 166 PRO 166 182 182 PRO PRO A . n A 1 167 MET 167 183 183 MET MET A . n A 1 168 ARG 168 184 184 ARG ARG A . n A 1 169 GLN 169 185 185 GLN GLN A . n A 1 170 ALA 170 186 186 ALA ALA A . n A 1 171 ALA 171 187 187 ALA ALA A . n A 1 172 VAL 172 188 188 VAL VAL A . n A 1 173 THR 173 189 189 THR THR A . n A 1 174 SER 174 190 190 SER SER A . n A 1 175 THR 175 191 191 THR THR A . n A 1 176 SER 176 192 192 SER SER A . n A 1 177 LEU 177 193 193 LEU LEU A . n A 1 178 THR 178 194 194 THR THR A . n A 1 179 ILE 179 195 195 ILE ILE A . n A 1 180 LYS 180 196 196 LYS LYS A . n A 1 181 SER 181 197 197 SER SER A . n A 1 182 VAL 182 198 198 VAL VAL A . n A 1 183 PHE 183 199 199 PHE PHE A . n A 1 184 THR 184 200 200 THR THR A . n A 1 185 ARG 185 201 201 ARG ARG A . n A 1 186 SER 186 202 202 SER SER A . n A 1 187 GLU 187 203 203 GLU GLU A . n A 1 188 LEU 188 204 204 LEU LEU A . n A 1 189 LYS 189 205 205 LYS LYS A . n A 1 190 PHE 190 206 206 PHE PHE A . n A 1 191 SER 191 207 207 SER SER A . n A 1 192 PRO 192 208 208 PRO PRO A . n A 1 193 GLN 193 209 209 GLN GLN A . n A 1 194 TRP 194 210 210 TRP TRP A . n A 1 195 SER 195 211 211 SER SER A . n A 1 196 HIS 196 212 212 HIS HIS A . n A 1 197 HIS 197 213 213 HIS HIS A . n A 1 198 GLY 198 214 214 GLY GLY A . n A 1 199 LYS 199 215 215 LYS LYS A . n A 1 200 ILE 200 216 216 ILE ILE A . n A 1 201 VAL 201 217 217 VAL VAL A . n A 1 202 THR 202 218 218 THR THR A . n A 1 203 CYS 203 219 219 CYS CYS A . n A 1 204 GLN 204 220 220 GLN GLN A . n A 1 205 LEU 205 221 221 LEU LEU A . n A 1 206 GLN 206 222 222 GLN GLN A . n A 1 207 ASP 207 223 223 ASP ASP A . n A 1 208 ALA 208 224 224 ALA ALA A . n A 1 209 ASP 209 225 225 ASP ASP A . n A 1 210 GLY 210 226 226 GLY GLY A . n A 1 211 LYS 211 227 227 LYS LYS A . n A 1 212 PHE 212 228 228 PHE PHE A . n A 1 213 LEU 213 229 229 LEU LEU A . n A 1 214 SER 214 230 230 SER SER A . n A 1 215 ALA 215 231 231 ALA ALA A . n A 1 216 ASP 216 232 232 ASP ASP A . n A 1 217 THR 217 233 233 THR THR A . n A 1 218 VAL 218 234 234 VAL VAL A . n A 1 219 GLN 219 235 235 GLN GLN A . n A 1 220 LEU 220 236 236 LEU LEU A . n A 1 221 ASN 221 237 237 ASN ASN A . n A 1 222 VAL 222 238 238 VAL VAL A . n A 1 223 LYS 223 239 239 LYS LYS A . n A 1 224 HIS 224 240 240 HIS HIS A . n A 1 225 THR 225 241 241 THR THR A . n A 1 226 PRO 226 242 242 PRO PRO A . n A 1 227 LYS 227 243 243 LYS LYS A . n A 1 228 LEU 228 244 244 LEU LEU A . n A 1 229 GLU 229 245 245 GLU GLU A . n A 1 230 ILE 230 246 246 ILE ILE A . n A 1 231 LYS 231 247 247 LYS LYS A . n A 1 232 VAL 232 248 248 VAL VAL A . n A 1 233 THR 233 249 249 THR THR A . n A 1 234 PRO 234 250 250 PRO PRO A . n A 1 235 SER 235 251 251 SER SER A . n A 1 236 ASP 236 252 252 ASP ASP A . n A 1 237 ALA 237 253 253 ALA ALA A . n A 1 238 ILE 238 254 254 ILE ILE A . n A 1 239 VAL 239 255 255 VAL VAL A . n A 1 240 ARG 240 256 256 ARG ARG A . n A 1 241 GLU 241 257 257 GLU GLU A . n A 1 242 GLY 242 258 258 GLY GLY A . n A 1 243 ASP 243 259 259 ASP ASP A . n A 1 244 SER 244 260 260 SER SER A . n A 1 245 VAL 245 261 261 VAL VAL A . n A 1 246 THR 246 262 262 THR THR A . n A 1 247 MET 247 263 263 MET MET A . n A 1 248 THR 248 264 264 THR THR A . n A 1 249 CYS 249 265 265 CYS CYS A . n A 1 250 GLU 250 266 266 GLU GLU A . n A 1 251 VAL 251 267 267 VAL VAL A . n A 1 252 SER 252 268 268 SER SER A . n A 1 253 SER 253 269 269 SER SER A . n A 1 254 SER 254 270 270 SER SER A . n A 1 255 ASN 255 271 271 ASN ASN A . n A 1 256 PRO 256 272 272 PRO PRO A . n A 1 257 GLU 257 273 273 GLU GLU A . n A 1 258 TYR 258 274 274 TYR TYR A . n A 1 259 THR 259 275 275 THR THR A . n A 1 260 THR 260 276 276 THR THR A . n A 1 261 VAL 261 277 277 VAL VAL A . n A 1 262 SER 262 278 278 SER SER A . n A 1 263 TRP 263 279 279 TRP TRP A . n A 1 264 LEU 264 280 280 LEU LEU A . n A 1 265 LYS 265 281 281 LYS LYS A . n A 1 266 ASP 266 282 282 ASP ASP A . n A 1 267 GLY 267 283 283 GLY GLY A . n A 1 268 THR 268 284 284 THR THR A . n A 1 269 SER 269 285 285 SER SER A . n A 1 270 LEU 270 286 286 LEU LEU A . n A 1 271 LYS 271 287 287 LYS LYS A . n A 1 272 LYS 272 288 288 LYS LYS A . n A 1 273 GLN 273 289 289 GLN GLN A . n A 1 274 ASN 274 290 290 ASN ASN A . n A 1 275 THR 275 291 291 THR THR A . n A 1 276 PHE 276 292 292 PHE PHE A . n A 1 277 THR 277 293 293 THR THR A . n A 1 278 LEU 278 294 294 LEU LEU A . n A 1 279 ASN 279 295 295 ASN ASN A . n A 1 280 LEU 280 296 296 LEU LEU A . n A 1 281 ARG 281 297 297 ARG ARG A . n A 1 282 GLU 282 298 298 GLU GLU A . n A 1 283 VAL 283 299 299 VAL VAL A . n A 1 284 THR 284 300 300 THR THR A . n A 1 285 LYS 285 301 301 LYS LYS A . n A 1 286 ASP 286 302 302 ASP ASP A . n A 1 287 GLN 287 303 303 GLN GLN A . n A 1 288 SER 288 304 304 SER SER A . n A 1 289 GLY 289 305 305 GLY GLY A . n A 1 290 LYS 290 306 306 LYS LYS A . n A 1 291 TYR 291 307 307 TYR TYR A . n A 1 292 CYS 292 308 308 CYS CYS A . n A 1 293 CYS 293 309 309 CYS CYS A . n A 1 294 GLN 294 310 310 GLN GLN A . n A 1 295 VAL 295 311 311 VAL VAL A . n A 1 296 SER 296 312 312 SER SER A . n A 1 297 ASN 297 313 313 ASN ASN A . n A 1 298 ASP 298 314 314 ASP ASP A . n A 1 299 VAL 299 315 315 VAL VAL A . n A 1 300 GLY 300 316 316 GLY GLY A . n A 1 301 PRO 301 317 317 PRO PRO A . n A 1 302 GLY 302 318 318 GLY GLY A . n A 1 303 ARG 303 319 319 ARG ARG A . n A 1 304 SER 304 320 320 SER SER A . n A 1 305 GLU 305 321 321 GLU GLU A . n A 1 306 GLU 306 322 322 GLU GLU A . n A 1 307 VAL 307 323 323 VAL VAL A . n A 1 308 PHE 308 324 324 PHE PHE A . n A 1 309 LEU 309 325 325 LEU LEU A . n A 1 310 GLN 310 326 326 GLN GLN A . n A 1 311 VAL 311 327 327 VAL VAL A . n A 1 312 GLN 312 328 328 GLN GLN A . n A 1 313 TYR 313 329 329 TYR TYR A . n A 1 314 ALA 314 330 330 ALA ALA A . n A 1 315 GLY 315 331 ? ? ? A . n A 1 316 GLY 316 332 ? ? ? A . n A 1 317 THR 317 333 ? ? ? A . n A 1 318 LYS 318 334 ? ? ? A . n A 1 319 HIS 319 335 ? ? ? A . n A 1 320 HIS 320 336 ? ? ? A . n A 1 321 HIS 321 337 ? ? ? A . n A 1 322 HIS 322 338 ? ? ? A . n A 1 323 HIS 323 339 ? ? ? A . n A 1 324 HIS 324 340 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 408 1 GOL GOL A . E 5 HOH 1 501 28 HOH HOH A . E 5 HOH 2 502 69 HOH HOH A . E 5 HOH 3 503 64 HOH HOH A . E 5 HOH 4 504 65 HOH HOH A . E 5 HOH 5 505 27 HOH HOH A . E 5 HOH 6 506 16 HOH HOH A . E 5 HOH 7 507 43 HOH HOH A . E 5 HOH 8 508 40 HOH HOH A . E 5 HOH 9 509 10 HOH HOH A . E 5 HOH 10 510 14 HOH HOH A . E 5 HOH 11 511 7 HOH HOH A . E 5 HOH 12 512 35 HOH HOH A . E 5 HOH 13 513 48 HOH HOH A . E 5 HOH 14 514 9 HOH HOH A . E 5 HOH 15 515 22 HOH HOH A . E 5 HOH 16 516 11 HOH HOH A . E 5 HOH 17 517 39 HOH HOH A . E 5 HOH 18 518 36 HOH HOH A . E 5 HOH 19 519 4 HOH HOH A . E 5 HOH 20 520 18 HOH HOH A . E 5 HOH 21 521 41 HOH HOH A . E 5 HOH 22 522 5 HOH HOH A . E 5 HOH 23 523 6 HOH HOH A . E 5 HOH 24 524 24 HOH HOH A . E 5 HOH 25 525 1 HOH HOH A . E 5 HOH 26 526 12 HOH HOH A . E 5 HOH 27 527 33 HOH HOH A . E 5 HOH 28 528 15 HOH HOH A . E 5 HOH 29 529 56 HOH HOH A . E 5 HOH 30 530 46 HOH HOH A . E 5 HOH 31 531 32 HOH HOH A . E 5 HOH 32 532 2 HOH HOH A . E 5 HOH 33 533 21 HOH HOH A . E 5 HOH 34 534 44 HOH HOH A . E 5 HOH 35 535 3 HOH HOH A . E 5 HOH 36 536 51 HOH HOH A . E 5 HOH 37 537 50 HOH HOH A . E 5 HOH 38 538 52 HOH HOH A . E 5 HOH 39 539 25 HOH HOH A . E 5 HOH 40 540 13 HOH HOH A . E 5 HOH 41 541 38 HOH HOH A . E 5 HOH 42 542 47 HOH HOH A . E 5 HOH 43 543 34 HOH HOH A . E 5 HOH 44 544 19 HOH HOH A . E 5 HOH 45 545 54 HOH HOH A . E 5 HOH 46 546 20 HOH HOH A . E 5 HOH 47 547 29 HOH HOH A . E 5 HOH 48 548 17 HOH HOH A . E 5 HOH 49 549 49 HOH HOH A . E 5 HOH 50 550 37 HOH HOH A . E 5 HOH 51 551 23 HOH HOH A . E 5 HOH 52 552 30 HOH HOH A . E 5 HOH 53 553 8 HOH HOH A . E 5 HOH 54 554 67 HOH HOH A . E 5 HOH 55 555 45 HOH HOH A . E 5 HOH 56 556 57 HOH HOH A . E 5 HOH 57 557 53 HOH HOH A . E 5 HOH 58 558 61 HOH HOH A . E 5 HOH 59 559 58 HOH HOH A . E 5 HOH 60 560 31 HOH HOH A . E 5 HOH 61 561 42 HOH HOH A . E 5 HOH 62 562 60 HOH HOH A . E 5 HOH 63 563 68 HOH HOH A . E 5 HOH 64 564 63 HOH HOH A . E 5 HOH 65 565 70 HOH HOH A . E 5 HOH 66 566 26 HOH HOH A . E 5 HOH 67 567 59 HOH HOH A . E 5 HOH 68 568 55 HOH HOH A . E 5 HOH 69 569 62 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-04 2 'Structure model' 1 1 2017-10-25 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp 4 3 'Structure model' pdbx_database_related 5 4 'Structure model' atom_site 6 4 'Structure model' chem_comp 7 4 'Structure model' entity 8 4 'Structure model' pdbx_branch_scheme 9 4 'Structure model' pdbx_chem_comp_identifier 10 4 'Structure model' pdbx_entity_branch 11 4 'Structure model' pdbx_entity_branch_descriptor 12 4 'Structure model' pdbx_entity_branch_link 13 4 'Structure model' pdbx_entity_branch_list 14 4 'Structure model' pdbx_entity_nonpoly 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' pdbx_struct_assembly_gen 17 4 'Structure model' pdbx_validate_close_contact 18 4 'Structure model' struct_asym 19 4 'Structure model' struct_conn 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.name' 7 3 'Structure model' '_chem_comp.type' 8 3 'Structure model' '_pdbx_database_related.db_id' 9 4 'Structure model' '_atom_site.auth_asym_id' 10 4 'Structure model' '_atom_site.auth_seq_id' 11 4 'Structure model' '_atom_site.label_asym_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_chem_comp.name' 14 4 'Structure model' '_chem_comp.type' 15 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 16 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 17 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 18 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 19 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 C GAL 1 ? ? O6 C SIA 2 ? ? 1.95 2 1 OD2 A ASP 50 ? ? OG1 A THR 125 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 30 ? ? 72.11 -22.48 2 1 GLU A 88 ? ? 68.71 -11.81 3 1 GLN A 89 ? ? -110.86 74.74 4 1 ASN A 99 ? ? -120.47 -82.08 5 1 SER A 166 ? ? -166.72 118.42 6 1 PRO A 272 ? ? -79.22 -164.69 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 17 ? A GLU 1 2 1 Y 1 A THR 18 ? A THR 2 3 1 Y 1 A GLY 19 ? A GLY 3 4 1 Y 1 A ASP 20 ? A ASP 4 5 1 Y 1 A SER 21 ? A SER 5 6 1 Y 1 A SER 22 ? A SER 6 7 1 Y 1 A LYS 84 ? A LYS 68 8 1 Y 1 A VAL 85 ? A VAL 69 9 1 Y 1 A GLY 331 ? A GLY 315 10 1 Y 1 A GLY 332 ? A GLY 316 11 1 Y 1 A THR 333 ? A THR 317 12 1 Y 1 A LYS 334 ? A LYS 318 13 1 Y 1 A HIS 335 ? A HIS 319 14 1 Y 1 A HIS 336 ? A HIS 320 15 1 Y 1 A HIS 337 ? A HIS 321 16 1 Y 1 A HIS 338 ? A HIS 322 17 1 Y 1 A HIS 339 ? A HIS 323 18 1 Y 1 A HIS 340 ? A HIS 324 # _pdbx_audit_support.funding_organization 'CIHR, Banting' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1331 n B 2 NAG 2 B NAG 2 A NAG 1332 n B 2 BMA 3 B BMA 3 A BMA 1333 n B 2 MAN 4 B MAN 4 A MAN 1336 n B 2 MAN 5 B MAN 5 A MAN 1337 n C 3 GAL 1 C GAL 1 B GAL 401 n C 3 SIA 2 C SIA 2 B SIA 402 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 3 DNeup5Aca2-6DGalpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,2,1/[a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2/a6-b2' WURCS PDB2Glycan 1.1.0 6 3 '[][b-D-Galp]{[(6+2)][a-D-Neup5Ac]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 3 2 SIA C2 O2 1 GAL O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 3 GAL 1 n 3 SIA 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #