HEADER OXIDOREDUCTASE 22-APR-17 5VKR TITLE HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH ADENOSINE-5- TITLE 2 DIPHOSPHORIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE E CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796 KEYWDS OXIDOREDUCTASE, ALCOHOL DEHYDROGENASE, HORSE LIVER, ADPR, ADENOSINE- KEYWDS 2 5-DIPHOSPHORIBOSE, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR B.V.PLAPP,J.K.RUBACH,S.RAMASWAMY REVDAT 5 04-OCT-23 5VKR 1 REMARK REVDAT 4 11-DEC-19 5VKR 1 REMARK REVDAT 3 02-AUG-17 5VKR 1 JRNL REVDAT 2 05-JUL-17 5VKR 1 JRNL REVDAT 1 03-MAY-17 5VKR 0 JRNL AUTH B.V.PLAPP,B.R.SAVARIMUTHU,D.J.FERRARO,J.K.RUBACH,E.N.BROWN, JRNL AUTH 2 S.RAMASWAMY JRNL TITL HORSE LIVER ALCOHOL DEHYDROGENASE: ZINC COORDINATION AND JRNL TITL 2 CATALYSIS. JRNL REF BIOCHEMISTRY V. 56 3632 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28640600 JRNL DOI 10.1021/ACS.BIOCHEM.7B00446 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.ABDALLAH,J.F.BIELLMANN,B.NORDSTROM,C.I.BRANDEN REMARK 1 TITL THE CONFORMATION OF ADENOSINE DIPHOSPHORIBOSE AND REMARK 1 TITL 2 8-BROMOADENOSINE DIPHOSPHORIBOSE WHEN BOUND TO LIVER ALCOHOL REMARK 1 TITL 3 DEHYDROGENASE. REMARK 1 REF EUR. J. BIOCHEM. V. 50 475 1975 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 163741 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.EKLUND,B.NORDSTROM,E.ZEPPEZAUER,G.SODERLUND,I.OHLSSON, REMARK 1 AUTH 2 T.BOIWE,B.O.SODERBERG,O.TAPIA,C.I.BRANDEN,A.AKESON REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF HORSE LIVER ALCOHOL REMARK 1 TITL 2 DEHYDROGENASE AT 2-4 A RESOLUTION. REMARK 1 REF J. MOL. BIOL. V. 102 27 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 178875 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 30816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2129 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 3.20000 REMARK 3 B33 (A**2) : -3.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2876 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2809 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3895 ; 2.066 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6510 ; 1.086 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.311 ;24.330 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;16.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3172 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 4.164 ; 4.542 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1494 ; 4.113 ; 4.538 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1867 ; 5.564 ; 6.806 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1868 ; 5.580 ; 6.808 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 6.475 ; 5.439 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1382 ; 6.474 ; 5.440 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2029 ; 9.798 ; 7.788 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3070 ;11.440 ;37.007 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3067 ;11.431 ;36.995 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0093 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 7.640 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.68 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 8ADH REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN IN DIALYSIS BAG REMARK 280 DIALYZED AGAINST 50 MM TRIS-HCL, PH 8.4 AS THE CONCENTRATION OF REMARK 280 2-METHYL-2,4-PENTANEDIOL WAS RAISED TO 25 %. A CRYSTAL WAS REMARK 280 SOAKED WITH 2 MM ADENOSINE-5-DIPHOSPHORIBOSE IN THE FINAL OUTER REMARK 280 DIALYSATE FOR 1 HR. CRYSTAL FLASH VITRIFIED BY PLUNGING IT INTO REMARK 280 LIQUID N2., MICRODIALYSIS, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.68500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.68500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.68500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.13500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.68500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.13500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.47500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 37 CD ARG A 37 NE -0.105 REMARK 500 TRP A 314 CB TRP A 314 CG -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -3.13 -142.57 REMARK 500 ASN A 109 -7.41 -142.03 REMARK 500 SER A 144 78.78 51.93 REMARK 500 CYS A 174 -74.28 -152.60 REMARK 500 TYR A 286 10.90 -145.99 REMARK 500 LYS A 354 34.98 -93.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 111.8 REMARK 620 3 CYS A 174 SG 133.5 109.9 REMARK 620 4 HOH A 502 O 91.5 103.6 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 108.2 REMARK 620 3 CYS A 103 SG 111.5 107.2 REMARK 620 4 CYS A 111 SG 101.9 120.8 107.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ADH RELATED DB: PDB REMARK 900 APO-ENZYME STRUCTURE WITH SAME SPACE GROUP, DETERMINED AT 278 K. REMARK 900 RELATED ID: 1YE3 RELATED DB: PDB REMARK 900 APO-ENZYME STRUCTURE WITH SAME SPACE GROUP, DETERMINED AT 100 K REMARK 900 RELATED ID: 5ADH RELATED DB: PDB REMARK 900 APO-ENZYME COMPLEXED WITH ADPR (ADENOSINE-5-DIPHOSPHORIBOSE) REMARK 900 DETERMINED AT 2.9 A AND 278 K. COORDINATES ONLY. REMARK 900 RELATED ID: 5VJ5 RELATED DB: PDB REMARK 900 RELATED ID: 5VJG RELATED DB: PDB REMARK 900 RELATED ID: 5VL0 RELATED DB: PDB DBREF 5VKR A 1 374 UNP P00327 ADH1E_HORSE 2 375 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 A 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 A 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE HET ZN A 401 1 HET ZN A 402 1 HET APR A 403 36 HETNAM ZN ZINC ION HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 APR C15 H23 N5 O14 P2 FORMUL 5 HOH *45(H2 O) HELIX 1 AA1 CYS A 46 SER A 54 1 9 HELIX 2 AA2 CYS A 100 HIS A 105 1 6 HELIX 3 AA3 PRO A 165 CYS A 170 1 6 HELIX 4 AA4 LEU A 171 GLY A 173 5 3 HELIX 5 AA5 CYS A 174 LYS A 185 1 12 HELIX 6 AA6 GLY A 201 ALA A 214 1 14 HELIX 7 AA7 ASN A 225 ASP A 227 5 3 HELIX 8 AA8 LYS A 228 GLY A 236 1 9 HELIX 9 AA9 ASN A 242 TYR A 246 5 5 HELIX 10 AB1 PRO A 249 SER A 258 1 10 HELIX 11 AB2 ARG A 271 CYS A 282 1 12 HELIX 12 AB3 PRO A 305 SER A 310 1 6 HELIX 13 AB4 ILE A 318 PHE A 322 5 5 HELIX 14 AB5 LYS A 323 ALA A 337 1 15 HELIX 15 AB6 LEU A 342 PRO A 344 5 3 HELIX 16 AB7 LYS A 354 SER A 364 1 11 SHEET 1 AA1 4 ILE A 7 VAL A 13 0 SHEET 2 AA1 4 SER A 22 VAL A 28 -1 O VAL A 26 N CYS A 9 SHEET 3 AA1 4 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 4 AA1 4 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 AA2 5 TYR A 149 ASP A 153 0 SHEET 2 AA2 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 AA2 5 ALA A 69 ILE A 76 -1 O ILE A 72 N LYS A 39 SHEET 4 AA2 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 AA2 5 VAL A 157 LYS A 159 -1 O ALA A 158 N ILE A 90 SHEET 1 AA3 4 TYR A 149 ASP A 153 0 SHEET 2 AA3 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 AA3 4 ARG A 369 THR A 373 -1 O LEU A 372 N THR A 43 SHEET 4 AA3 4 ILE A 346 PRO A 351 1 N LEU A 350 O THR A 373 SHEET 1 AA4 6 GLU A 239 VAL A 241 0 SHEET 2 AA4 6 ARG A 218 VAL A 222 1 N GLY A 221 O GLU A 239 SHEET 3 AA4 6 THR A 194 PHE A 198 1 N CYS A 195 O ILE A 220 SHEET 4 AA4 6 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 AA4 6 VAL A 288 ILE A 291 1 O VAL A 290 N GLU A 267 SHEET 6 AA4 6 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 LINK SG CYS A 46 ZN ZN A 401 1555 1555 2.36 LINK NE2 HIS A 67 ZN ZN A 401 1555 1555 2.10 LINK SG CYS A 97 ZN ZN A 402 1555 1555 2.38 LINK SG CYS A 100 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 103 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 111 ZN ZN A 402 1555 1555 2.42 LINK SG CYS A 174 ZN ZN A 401 1555 1555 2.27 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.34 CISPEP 1 LEU A 61 PRO A 62 0 -0.90 SITE 1 AC1 4 CYS A 46 HIS A 67 CYS A 174 HOH A 502 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 14 ARG A 47 GLY A 201 GLY A 202 VAL A 203 SITE 2 AC3 14 ASP A 223 ILE A 224 LYS A 228 VAL A 268 SITE 3 AC3 14 ILE A 269 GLY A 270 ARG A 271 GLY A 293 SITE 4 AC3 14 ARG A 369 HOH A 503 CRYST1 55.370 74.270 180.950 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018060 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005526 0.00000