HEADER OXIDOREDUCTASE 22-APR-17 5VKT TITLE CINNAMYL ALCOHOL DEHYDROGENASES (SBCAD4) FROM SORGHUM BICOLOR (L.) TITLE 2 MOENCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINNAMYL ALCOHOL DEHYDROGENASES (SBCAD4); COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.195; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 GENE: SORBI_002G195400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA KEYWDS CINNAMYL ALCOHOL DEHYDROGENASES, CAD, SINAPYL ALCHOHL DEHYDROGENASE, KEYWDS 2 SAD, SORGHUM, DEHYDROGENASE, NADP+, NADPH, P-COUMARALDEHYDE, KEYWDS 3 CONIFERALDEHYDE, SINAPALDEHYDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.WALKER,S.Y.JUN,C.KANG REVDAT 4 13-MAR-24 5VKT 1 LINK REVDAT 3 22-NOV-17 5VKT 1 REMARK REVDAT 2 16-AUG-17 5VKT 1 JRNL REVDAT 1 09-AUG-17 5VKT 0 JRNL AUTH S.Y.JUN,A.M.WALKER,H.KIM,J.RALPH,W.VERMERRIS,S.E.SATTLER, JRNL AUTH 2 C.KANG JRNL TITL THE ENZYME ACTIVITY AND SUBSTRATE SPECIFICITY OF TWO MAJOR JRNL TITL 2 CINNAMYL ALCOHOL DEHYDROGENASES IN SORGHUM (SORGHUM JRNL TITL 3 BICOLOR), SBCAD2 AND SBCAD4. JRNL REF PLANT PHYSIOL. V. 174 2128 2017 JRNL REFN ESSN 1532-2548 JRNL PMID 28606901 JRNL DOI 10.1104/PP.17.00576 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 67935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6971 - 4.4024 1.00 4959 150 0.1475 0.1573 REMARK 3 2 4.4024 - 3.4947 1.00 4863 148 0.1331 0.1422 REMARK 3 3 3.4947 - 3.0530 1.00 4863 147 0.1522 0.1808 REMARK 3 4 3.0530 - 2.7739 1.00 4818 147 0.1551 0.1655 REMARK 3 5 2.7739 - 2.5751 1.00 4830 147 0.1578 0.2086 REMARK 3 6 2.5751 - 2.4233 1.00 4838 146 0.1610 0.1929 REMARK 3 7 2.4233 - 2.3020 1.00 4836 146 0.1590 0.1920 REMARK 3 8 2.3020 - 2.2018 1.00 4816 147 0.1654 0.1935 REMARK 3 9 2.2018 - 2.1170 1.00 4812 145 0.1683 0.1913 REMARK 3 10 2.1170 - 2.0440 1.00 4832 147 0.1809 0.2058 REMARK 3 11 2.0440 - 1.9800 1.00 4779 145 0.1951 0.2273 REMARK 3 12 1.9800 - 1.9234 0.98 4730 144 0.2184 0.2674 REMARK 3 13 1.9234 - 1.8728 0.92 4412 133 0.2527 0.2729 REMARK 3 14 1.8728 - 1.8271 0.74 3547 108 0.2762 0.3232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5434 REMARK 3 ANGLE : 0.568 7381 REMARK 3 CHIRALITY : 0.046 850 REMARK 3 PLANARITY : 0.003 956 REMARK 3 DIHEDRAL : 9.837 3159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VKT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.827 REMARK 200 RESOLUTION RANGE LOW (A) : 45.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V TACSIMATE PH 7.0, 5% V/V 2 REMARK 280 -PROPANOL, 0.1 M IMIDAZOLE PH 7.0, 8% W/V POLYETHYLENE GLYCOL REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.14000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 11.41812 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -96.61564 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 MET A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 VAL A 361 REMARK 465 ALA A 362 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 MET B 3 REMARK 465 GLU B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 CYS B 7 REMARK 465 VAL B 361 REMARK 465 ALA B 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 293 O HOH A 503 1.32 REMARK 500 HH TYR B 95 O HOH B 506 1.47 REMARK 500 H HIS B 129 O HOH B 508 1.49 REMARK 500 HH12 ARG B 347 O HOH B 502 1.51 REMARK 500 HD22 ASN A 112 O HOH A 502 1.58 REMARK 500 HE21 GLN B 328 O HOH B 514 1.59 REMARK 500 O HOH B 772 O HOH B 773 1.95 REMARK 500 O HOH B 515 O HOH B 817 1.95 REMARK 500 O HOH B 751 O HOH B 820 1.97 REMARK 500 O HOH A 842 O HOH A 885 1.97 REMARK 500 O HOH A 515 O HOH A 619 1.97 REMARK 500 O HOH B 547 O HOH B 847 2.00 REMARK 500 O HOH A 512 O HOH A 856 2.02 REMARK 500 OD1 ASP A 125 O HOH A 501 2.04 REMARK 500 O GLY A 301 O HOH A 502 2.04 REMARK 500 NE2 HIS B 69 O HOH B 501 2.04 REMARK 500 O HOH A 616 O HOH A 857 2.05 REMARK 500 O HOH A 807 O HOH A 854 2.06 REMARK 500 NH1 ARG B 347 O HOH B 502 2.07 REMARK 500 O HOH A 521 O HOH A 653 2.07 REMARK 500 O HOH A 745 O HOH A 885 2.09 REMARK 500 O HOH A 759 O HOH A 850 2.09 REMARK 500 O HOH B 852 O HOH B 870 2.09 REMARK 500 O HOH A 730 O HOH A 799 2.10 REMARK 500 O HOH A 844 O HOH A 849 2.11 REMARK 500 O HOH A 719 O HOH A 879 2.11 REMARK 500 OG SER B 255 O HOH B 503 2.11 REMARK 500 O HOH B 712 O HOH B 834 2.12 REMARK 500 O HOH A 520 O HOH A 866 2.12 REMARK 500 O HOH B 827 O HOH B 926 2.12 REMARK 500 O HOH A 657 O HOH A 783 2.13 REMARK 500 N GLY A 293 O HOH A 503 2.13 REMARK 500 NZ LYS B 40 O HOH B 504 2.14 REMARK 500 O HOH B 705 O HOH B 799 2.15 REMARK 500 O HOH A 507 O HOH A 531 2.15 REMARK 500 O HOH B 838 O HOH B 859 2.16 REMARK 500 O HOH A 679 O HOH A 867 2.16 REMARK 500 O HOH A 505 O HOH A 772 2.16 REMARK 500 O HOH B 762 O HOH B 789 2.16 REMARK 500 O HOH B 716 O HOH B 770 2.17 REMARK 500 O HOH A 786 O HOH A 801 2.18 REMARK 500 O HOH A 843 O HOH A 927 2.19 REMARK 500 O HOH A 579 O HOH A 829 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 857 O HOH B 883 1554 2.11 REMARK 500 O HOH A 596 O HOH B 724 1554 2.16 REMARK 500 O HOH A 849 O HOH B 674 1554 2.16 REMARK 500 O HOH A 896 O HOH B 914 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 69 26.97 -152.69 REMARK 500 ARG A 101 -8.56 84.61 REMARK 500 HIS A 128 57.48 -145.37 REMARK 500 CYS A 165 -61.26 -132.54 REMARK 500 LEU A 179 58.30 -97.99 REMARK 500 ASN A 180 30.03 -152.49 REMARK 500 VAL A 302 -131.42 33.82 REMARK 500 ARG B 101 -9.02 77.64 REMARK 500 HIS B 128 58.23 -142.92 REMARK 500 CYS B 165 -72.65 -121.70 REMARK 500 ASN B 180 29.25 -157.72 REMARK 500 ASP B 236 90.69 -67.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 930 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 951 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 952 DISTANCE = 7.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 HIS A 69 NE2 108.3 REMARK 620 3 CYS A 165 SG 129.5 109.8 REMARK 620 4 FMT A 404 O1 101.3 103.2 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 106 SG 106.4 REMARK 620 3 CYS A 114 SG 121.5 103.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 47 SG REMARK 620 2 HIS B 69 NE2 102.0 REMARK 620 3 GLU B 70 OE1 108.0 120.7 REMARK 620 4 CYS B 165 SG 119.9 105.3 102.1 REMARK 620 5 HOH B 501 O 90.1 61.6 159.8 59.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 100 SG REMARK 620 2 CYS B 103 SG 108.0 REMARK 620 3 CYS B 106 SG 117.4 102.7 REMARK 620 4 CYS B 114 SG 105.7 120.0 103.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 DBREF 5VKT A 1 362 UNP C5XC49 C5XC49_SORBI 1 362 DBREF 5VKT B 1 362 UNP C5XC49 C5XC49_SORBI 1 362 SEQRES 1 A 362 MET ASP MET GLU GLN GLY CYS LYS THR ALA HIS GLY TRP SEQRES 2 A 362 ALA ALA ARG ASP ALA SER GLY HIS LEU SER PRO TYR SER SEQRES 3 A 362 PHE SER ALA ARG ILE GLN GLY ASP ALA ASP VAL THR ILE SEQRES 4 A 362 LYS VAL LEU PHE CYS GLY ILE CYS HIS THR ASP LEU HIS SEQRES 5 A 362 VAL ILE LYS ASN GLU TRP GLY ASN ALA MET TYR PRO VAL SEQRES 6 A 362 VAL PRO GLY HIS GLU VAL VAL GLY VAL VAL THR ASP VAL SEQRES 7 A 362 GLY HIS GLY VAL THR LYS PHE LYS ALA GLY ASP THR VAL SEQRES 8 A 362 GLY VAL GLY TYR PHE VAL ASP SER CYS ARG THR CYS GLU SEQRES 9 A 362 SER CYS SER THR GLY HIS GLU ASN TYR CYS PRO ASP LEU SEQRES 10 A 362 VAL LEU THR SER ASN GLY VAL ASP HIS HIS HIS HIS GLY SEQRES 11 A 362 ALA THR THR LYS GLY GLY PHE SER ASP VAL LEU VAL VAL SEQRES 12 A 362 SER GLN ASP PHE VAL VAL ARG VAL PRO GLU SER LEU PRO SEQRES 13 A 362 LEU ASP GLY ALA ALA PRO LEU LEU CYS ALA GLY VAL THR SEQRES 14 A 362 VAL TYR SER PRO MET ALA GLN TYR ALA LEU ASN GLU PRO SEQRES 15 A 362 GLY LYS HIS LEU GLY VAL VAL GLY LEU GLY GLY LEU GLY SEQRES 16 A 362 HIS MET ALA VAL LYS PHE ALA LYS ALA PHE GLY MET THR SEQRES 17 A 362 VAL THR VAL ILE SER SER SER PRO GLY LYS ARG ASP GLU SEQRES 18 A 362 ALA LEU GLY ARG LEU GLY ALA ASP ALA PHE LEU VAL SER SEQRES 19 A 362 HIS ASP ALA ALA GLN MET LYS ALA ALA ALA ALA THR LEU SEQRES 20 A 362 ASP GLY ILE ILE ASP THR VAL SER ALA GLY HIS GLN ILE SEQRES 21 A 362 VAL PRO LEU LEU ALA LEU LEU LYS PRO MET GLY GLN MET SEQRES 22 A 362 VAL VAL VAL GLY ALA PRO SER THR PRO LEU GLU LEU PRO SEQRES 23 A 362 ALA TYR ALA ILE ILE THR GLY GLY LYS ARG VAL ALA GLY SEQRES 24 A 362 ASN GLY VAL GLY SER VAL ALA ASP CYS GLN ALA MET LEU SEQRES 25 A 362 ASP PHE ALA GLY GLU HIS GLY VAL THR ALA ASP ILE GLU SEQRES 26 A 362 VAL VAL GLN MET ASP TYR VAL ASN THR ALA ILE GLU ARG SEQRES 27 A 362 LEU GLU LYS ASN ASP VAL ARG TYR ARG PHE VAL ILE ASP SEQRES 28 A 362 VAL ALA GLY SER LYS MET GLU GLU THR VAL ALA SEQRES 1 B 362 MET ASP MET GLU GLN GLY CYS LYS THR ALA HIS GLY TRP SEQRES 2 B 362 ALA ALA ARG ASP ALA SER GLY HIS LEU SER PRO TYR SER SEQRES 3 B 362 PHE SER ALA ARG ILE GLN GLY ASP ALA ASP VAL THR ILE SEQRES 4 B 362 LYS VAL LEU PHE CYS GLY ILE CYS HIS THR ASP LEU HIS SEQRES 5 B 362 VAL ILE LYS ASN GLU TRP GLY ASN ALA MET TYR PRO VAL SEQRES 6 B 362 VAL PRO GLY HIS GLU VAL VAL GLY VAL VAL THR ASP VAL SEQRES 7 B 362 GLY HIS GLY VAL THR LYS PHE LYS ALA GLY ASP THR VAL SEQRES 8 B 362 GLY VAL GLY TYR PHE VAL ASP SER CYS ARG THR CYS GLU SEQRES 9 B 362 SER CYS SER THR GLY HIS GLU ASN TYR CYS PRO ASP LEU SEQRES 10 B 362 VAL LEU THR SER ASN GLY VAL ASP HIS HIS HIS HIS GLY SEQRES 11 B 362 ALA THR THR LYS GLY GLY PHE SER ASP VAL LEU VAL VAL SEQRES 12 B 362 SER GLN ASP PHE VAL VAL ARG VAL PRO GLU SER LEU PRO SEQRES 13 B 362 LEU ASP GLY ALA ALA PRO LEU LEU CYS ALA GLY VAL THR SEQRES 14 B 362 VAL TYR SER PRO MET ALA GLN TYR ALA LEU ASN GLU PRO SEQRES 15 B 362 GLY LYS HIS LEU GLY VAL VAL GLY LEU GLY GLY LEU GLY SEQRES 16 B 362 HIS MET ALA VAL LYS PHE ALA LYS ALA PHE GLY MET THR SEQRES 17 B 362 VAL THR VAL ILE SER SER SER PRO GLY LYS ARG ASP GLU SEQRES 18 B 362 ALA LEU GLY ARG LEU GLY ALA ASP ALA PHE LEU VAL SER SEQRES 19 B 362 HIS ASP ALA ALA GLN MET LYS ALA ALA ALA ALA THR LEU SEQRES 20 B 362 ASP GLY ILE ILE ASP THR VAL SER ALA GLY HIS GLN ILE SEQRES 21 B 362 VAL PRO LEU LEU ALA LEU LEU LYS PRO MET GLY GLN MET SEQRES 22 B 362 VAL VAL VAL GLY ALA PRO SER THR PRO LEU GLU LEU PRO SEQRES 23 B 362 ALA TYR ALA ILE ILE THR GLY GLY LYS ARG VAL ALA GLY SEQRES 24 B 362 ASN GLY VAL GLY SER VAL ALA ASP CYS GLN ALA MET LEU SEQRES 25 B 362 ASP PHE ALA GLY GLU HIS GLY VAL THR ALA ASP ILE GLU SEQRES 26 B 362 VAL VAL GLN MET ASP TYR VAL ASN THR ALA ILE GLU ARG SEQRES 27 B 362 LEU GLU LYS ASN ASP VAL ARG TYR ARG PHE VAL ILE ASP SEQRES 28 B 362 VAL ALA GLY SER LYS MET GLU GLU THR VAL ALA HET ZN A 401 1 HET ZN A 402 1 HET GOL A 403 11 HET FMT A 404 3 HET NAP A 405 73 HET MLT A 406 13 HET ZN B 401 1 HET ZN B 402 1 HET ACT B 403 7 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MLT D-MALATE HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 FMT C H2 O2 FORMUL 7 NAP C21 H28 N7 O17 P3 FORMUL 8 MLT C4 H6 O5 FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *884(H2 O) HELIX 1 AA1 CYS A 47 LYS A 55 1 9 HELIX 2 AA2 CYS A 103 THR A 108 1 6 HELIX 3 AA3 HIS A 110 CYS A 114 5 5 HELIX 4 AA4 ASP A 125 HIS A 129 5 5 HELIX 5 AA5 ASP A 146 VAL A 148 5 3 HELIX 6 AA6 PRO A 156 ALA A 161 1 6 HELIX 7 AA7 PRO A 162 LEU A 164 5 3 HELIX 8 AA8 CYS A 165 TYR A 177 1 13 HELIX 9 AA9 GLY A 192 PHE A 205 1 14 HELIX 10 AB1 SER A 215 GLY A 217 5 3 HELIX 11 AB2 LYS A 218 GLY A 224 1 7 HELIX 12 AB3 ASP A 236 ALA A 243 1 8 HELIX 13 AB4 ILE A 260 LEU A 266 1 7 HELIX 14 AB5 ALA A 287 THR A 292 1 6 HELIX 15 AB6 SER A 304 GLY A 319 1 16 HELIX 16 AB7 GLN A 328 ASP A 330 5 3 HELIX 17 AB8 TYR A 331 LYS A 341 1 11 HELIX 18 AB9 CYS B 47 LYS B 55 1 9 HELIX 19 AC1 CYS B 103 THR B 108 1 6 HELIX 20 AC2 HIS B 110 CYS B 114 5 5 HELIX 21 AC3 ASP B 125 HIS B 129 5 5 HELIX 22 AC4 ASP B 146 VAL B 148 5 3 HELIX 23 AC5 PRO B 156 ALA B 161 1 6 HELIX 24 AC6 PRO B 162 LEU B 164 5 3 HELIX 25 AC7 CYS B 165 TYR B 177 1 13 HELIX 26 AC8 GLY B 192 PHE B 205 1 14 HELIX 27 AC9 SER B 215 GLY B 217 5 3 HELIX 28 AD1 LYS B 218 GLY B 224 1 7 HELIX 29 AD2 ASP B 236 ALA B 243 1 8 HELIX 30 AD3 ILE B 260 LEU B 266 1 7 HELIX 31 AD4 PRO B 286 THR B 292 1 7 HELIX 32 AD5 SER B 304 HIS B 318 1 15 HELIX 33 AD6 GLN B 328 ASP B 330 5 3 HELIX 34 AD7 TYR B 331 LYS B 341 1 11 SHEET 1 AA1 2 THR A 9 ALA A 15 0 SHEET 2 AA1 2 LEU A 22 SER A 28 -1 O TYR A 25 N GLY A 12 SHEET 1 AA2 5 VAL A 140 SER A 144 0 SHEET 2 AA2 5 ASP A 36 GLY A 45 -1 N ILE A 39 O LEU A 141 SHEET 3 AA2 5 VAL A 71 VAL A 78 -1 O ASP A 77 N THR A 38 SHEET 4 AA2 5 THR A 90 VAL A 93 -1 O VAL A 91 N GLY A 73 SHEET 5 AA2 5 VAL A 149 ARG A 150 -1 O VAL A 149 N GLY A 92 SHEET 1 AA3 4 VAL A 140 SER A 144 0 SHEET 2 AA3 4 ASP A 36 GLY A 45 -1 N ILE A 39 O LEU A 141 SHEET 3 AA3 4 ARG A 347 ASP A 351 -1 O ILE A 350 N CYS A 44 SHEET 4 AA3 4 ILE A 324 VAL A 327 1 N VAL A 327 O ASP A 351 SHEET 1 AA4 2 PHE A 96 ASP A 98 0 SHEET 2 AA4 2 VAL A 118 LEU A 119 -1 O VAL A 118 N ASP A 98 SHEET 1 AA5 6 ALA A 230 VAL A 233 0 SHEET 2 AA5 6 THR A 208 SER A 213 1 N VAL A 211 O LEU A 232 SHEET 3 AA5 6 HIS A 185 VAL A 189 1 N VAL A 188 O ILE A 212 SHEET 4 AA5 6 LEU A 247 ASP A 252 1 O ILE A 251 N VAL A 189 SHEET 5 AA5 6 LEU A 267 VAL A 275 1 O VAL A 274 N ILE A 250 SHEET 6 AA5 6 ARG A 296 GLY A 299 1 O ARG A 296 N MET A 273 SHEET 1 AA6 2 THR B 9 ALA B 15 0 SHEET 2 AA6 2 LEU B 22 SER B 28 -1 O PHE B 27 N ALA B 10 SHEET 1 AA7 5 VAL B 140 SER B 144 0 SHEET 2 AA7 5 ASP B 36 GLY B 45 -1 N ILE B 39 O LEU B 141 SHEET 3 AA7 5 VAL B 71 VAL B 78 -1 O ASP B 77 N THR B 38 SHEET 4 AA7 5 THR B 90 VAL B 93 -1 O VAL B 91 N GLY B 73 SHEET 5 AA7 5 VAL B 149 ARG B 150 -1 O VAL B 149 N GLY B 92 SHEET 1 AA8 4 VAL B 140 SER B 144 0 SHEET 2 AA8 4 ASP B 36 GLY B 45 -1 N ILE B 39 O LEU B 141 SHEET 3 AA8 4 ARG B 347 ASP B 351 -1 O ILE B 350 N CYS B 44 SHEET 4 AA8 4 ILE B 324 VAL B 327 1 N VAL B 327 O ASP B 351 SHEET 1 AA9 2 PHE B 96 ASP B 98 0 SHEET 2 AA9 2 VAL B 118 LEU B 119 -1 O VAL B 118 N ASP B 98 SHEET 1 AB1 6 ALA B 230 VAL B 233 0 SHEET 2 AB1 6 THR B 208 SER B 213 1 N VAL B 211 O LEU B 232 SHEET 3 AB1 6 HIS B 185 VAL B 189 1 N VAL B 188 O ILE B 212 SHEET 4 AB1 6 LEU B 247 ASP B 252 1 O ILE B 251 N GLY B 187 SHEET 5 AB1 6 LEU B 267 VAL B 275 1 O VAL B 274 N ASP B 252 SHEET 6 AB1 6 ARG B 296 GLY B 299 1 O ALA B 298 N VAL B 275 LINK SG CYS A 47 ZN ZN A 401 1555 1555 2.36 LINK NE2 HIS A 69 ZN ZN A 401 1555 1555 2.04 LINK SG CYS A 103 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 106 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 114 ZN ZN A 402 1555 1555 2.39 LINK SG CYS A 165 ZN ZN A 401 1555 1555 2.29 LINK ZN ZN A 401 O1 FMT A 404 1555 1555 2.14 LINK SG CYS B 47 ZN ZN B 402 1555 1555 2.28 LINK NE2 HIS B 69 ZN ZN B 402 1555 1555 2.07 LINK OE1 GLU B 70 ZN ZN B 402 1555 1555 2.02 LINK SG CYS B 100 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 103 ZN ZN B 401 1555 1555 2.28 LINK SG CYS B 106 ZN ZN B 401 1555 1555 2.38 LINK SG CYS B 114 ZN ZN B 401 1555 1555 2.28 LINK SG CYS B 165 ZN ZN B 402 1555 1555 2.42 LINK ZN ZN B 402 O HOH B 501 1555 1555 1.92 CISPEP 1 TYR A 63 PRO A 64 0 -3.51 CISPEP 2 ARG A 345 TYR A 346 0 4.29 CISPEP 3 ARG A 345 TYR A 346 0 4.57 CISPEP 4 TYR B 63 PRO B 64 0 -4.45 CISPEP 5 ARG B 345 TYR B 346 0 2.35 SITE 1 AC1 5 CYS A 47 HIS A 69 CYS A 165 FMT A 404 SITE 2 AC1 5 NAP A 405 SITE 1 AC2 4 CYS A 100 CYS A 103 CYS A 106 CYS A 114 SITE 1 AC3 6 GLY A 94 PHE A 96 PHE A 147 GLY A 303 SITE 2 AC3 6 CYS A 308 HOH A 562 SITE 1 AC4 9 CYS A 47 THR A 49 HIS A 69 TYR A 95 SITE 2 AC4 9 CYS A 165 ZN A 401 NAP A 405 HOH A 575 SITE 3 AC4 9 HOH A 616 SITE 1 AC5 41 CYS A 47 HIS A 48 THR A 49 HIS A 52 SITE 2 AC5 41 TRP A 58 CYS A 165 THR A 169 GLY A 190 SITE 3 AC5 41 LEU A 191 GLY A 192 GLY A 193 LEU A 194 SITE 4 AC5 41 SER A 213 SER A 214 SER A 215 LYS A 218 SITE 5 AC5 41 THR A 253 VAL A 254 SER A 255 ALA A 256 SITE 6 AC5 41 VAL A 276 GLY A 277 ALA A 278 ASN A 300 SITE 7 AC5 41 GLY A 301 VAL A 302 LEU A 339 ASN A 342 SITE 8 AC5 41 ARG A 347 ZN A 401 FMT A 404 HOH A 560 SITE 9 AC5 41 HOH A 575 HOH A 585 HOH A 590 HOH A 605 SITE 10 AC5 41 HOH A 621 HOH A 638 HOH A 668 HOH A 753 SITE 11 AC5 41 ILE B 291 SITE 1 AC6 9 SER A 99 ARG A 101 CYS A 106 GLU A 111 SITE 2 AC6 9 ASP A 146 VAL A 305 HOH A 533 HOH A 550 SITE 3 AC6 9 HOH A 745 SITE 1 AC7 4 CYS B 100 CYS B 103 CYS B 106 CYS B 114 SITE 1 AC8 5 CYS B 47 HIS B 69 GLU B 70 CYS B 165 SITE 2 AC8 5 HOH B 501 SITE 1 AC9 4 SER B 213 SER B 214 HOH B 515 HOH B 711 CRYST1 55.597 74.280 97.288 90.00 96.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017987 0.000000 0.002126 0.00000 SCALE2 0.000000 0.013463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010350 0.00000