HEADER HYDROLASE 25-APR-17 5VLE TITLE ULTRAHIGH RESOLUTION X-RAY CRYSTAL STRUCTURE OF RUTHENOCENE CONJUGATED TITLE 2 PENICILLOATE AND PENILLOATE PRODUCTS IN COMPLEX WITH CTX-M-14 E166A TITLE 3 BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-284; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CTX-M-14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, ORGANOMETALLIC, RUTHENOCENE, CTX-M-14, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.LEWANDOWSKI,Y.CHEN REVDAT 5 06-NOV-24 5VLE 1 LINK REVDAT 4 11-DEC-19 5VLE 1 SEQRES REVDAT 3 17-JAN-18 5VLE 1 JRNL REVDAT 2 15-NOV-17 5VLE 1 JRNL REVDAT 1 08-NOV-17 5VLE 0 JRNL AUTH E.M.LEWANDOWSKI,K.G.LETHBRIDGE,R.SANISHVILI,J.SKIBA, JRNL AUTH 2 K.KOWALSKI,Y.CHEN JRNL TITL MECHANISMS OF PROTON RELAY AND PRODUCT RELEASE BY CLASS A JRNL TITL 2 BETA-LACTAMASE AT ULTRAHIGH RESOLUTION. JRNL REF FEBS J. V. 285 87 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29095570 JRNL DOI 10.1111/FEBS.14315 REMARK 2 REMARK 2 RESOLUTION. 0.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.109 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.102 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 320421 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 170 REMARK 3 SOLVENT ATOMS : 667 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 4594.4 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 3758.1 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 225 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.035 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.033 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.112 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.099 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.070 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.032 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 374335 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM PHOSPHATE, PH 7.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.20900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PCA B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 467 O HOH B 710 2.05 REMARK 500 C17 JSC A 902 O HOH A 1086 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 237 CB SER A 237 OG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 75 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 MET A 75 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 THR B 55 C - N - CA ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -144.04 50.50 REMARK 500 VAL A 103 -136.87 -121.75 REMARK 500 ASN A 106 63.77 -154.81 REMARK 500 ASN A 106 52.29 -143.61 REMARK 500 SER A 220 -125.44 -104.05 REMARK 500 ASP B 53 13.48 -143.46 REMARK 500 CYS B 69 -142.52 50.68 REMARK 500 VAL B 103 -135.20 -118.20 REMARK 500 ASN B 106 67.06 -151.64 REMARK 500 SER B 220 -127.49 -107.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1321 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1323 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1325 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1326 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1327 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1328 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH B 738 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 739 DISTANCE = 6.54 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 JSE B 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 905 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 238 O REMARK 620 2 HOH A1051 O 84.1 REMARK 620 3 HOH A1062 O 72.5 104.4 REMARK 620 4 HOH A1065 O 82.0 82.8 152.4 REMARK 620 5 HOH A1141 O 80.4 150.1 95.0 69.9 REMARK 620 6 HOH A1155 O 151.6 74.8 94.4 113.2 126.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 238 O REMARK 620 2 HOH B 444 O 84.5 REMARK 620 3 HOH B 485 O 152.0 77.4 REMARK 620 4 HOH B 497 O 72.6 106.0 91.9 REMARK 620 5 HOH B 500 O 84.6 80.6 112.8 155.3 REMARK 620 6 HOH B 632 O 80.7 152.0 124.1 92.1 74.5 REMARK 620 7 HOH B 675 O 127.6 147.5 74.2 90.6 96.1 50.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSC A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSE A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RU A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JSE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 304 DBREF 5VLE A 25 290 UNP H6UQI0 H6UQI0_ECOLX 22 284 DBREF 5VLE B 25 290 UNP H6UQI0 H6UQI0_ECOLX 22 284 SEQADV 5VLE ALA A 166 UNP H6UQI0 GLU 162 ENGINEERED MUTATION SEQADV 5VLE ALA B 166 UNP H6UQI0 GLU 162 ENGINEERED MUTATION SEQRES 1 A 263 PCA THR SER ALA VAL GLN GLN LYS LEU ALA ALA LEU GLU SEQRES 2 A 263 LYS SER SER GLY GLY ARG LEU GLY VAL ALA LEU ILE ASP SEQRES 3 A 263 THR ALA ASP ASN THR GLN VAL LEU TYR ARG GLY ASP GLU SEQRES 4 A 263 ARG PHE PRO MET CYS SER THR SER LYS VAL MET ALA ALA SEQRES 5 A 263 ALA ALA VAL LEU LYS GLN SER GLU THR GLN LYS GLN LEU SEQRES 6 A 263 LEU ASN GLN PRO VAL GLU ILE LYS PRO ALA ASP LEU VAL SEQRES 7 A 263 ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN GLY THR SEQRES 8 A 263 MET THR LEU ALA GLU LEU SER ALA ALA ALA LEU GLN TYR SEQRES 9 A 263 SER ASP ASN THR ALA MET ASN LYS LEU ILE ALA GLN LEU SEQRES 10 A 263 GLY GLY PRO GLY GLY VAL THR ALA PHE ALA ARG ALA ILE SEQRES 11 A 263 GLY ASP GLU THR PHE ARG LEU ASP ARG THR ALA PRO THR SEQRES 12 A 263 LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 A 263 THR PRO ARG ALA MET ALA GLN THR LEU ARG GLN LEU THR SEQRES 14 A 263 LEU GLY HIS ALA LEU GLY GLU THR GLN ARG ALA GLN LEU SEQRES 15 A 263 VAL THR TRP LEU LYS GLY ASN THR THR GLY ALA ALA SER SEQRES 16 A 263 ILE ARG ALA GLY LEU PRO THR SER TRP THR VAL GLY ASP SEQRES 17 A 263 LYS THR GLY SER GLY ASP TYR GLY THR THR ASN ASP ILE SEQRES 18 A 263 ALA VAL ILE TRP PRO GLN GLY ARG ALA PRO LEU VAL LEU SEQRES 19 A 263 VAL THR TYR PHE THR GLN PRO GLN GLN ASN ALA GLU SER SEQRES 20 A 263 ARG ARG ASP VAL LEU ALA SER ALA ALA ARG ILE ILE ALA SEQRES 21 A 263 GLU GLY LEU SEQRES 1 B 263 PCA THR SER ALA VAL GLN GLN LYS LEU ALA ALA LEU GLU SEQRES 2 B 263 LYS SER SER GLY GLY ARG LEU GLY VAL ALA LEU ILE ASP SEQRES 3 B 263 THR ALA ASP ASN THR GLN VAL LEU TYR ARG GLY ASP GLU SEQRES 4 B 263 ARG PHE PRO MET CYS SER THR SER LYS VAL MET ALA ALA SEQRES 5 B 263 ALA ALA VAL LEU LYS GLN SER GLU THR GLN LYS GLN LEU SEQRES 6 B 263 LEU ASN GLN PRO VAL GLU ILE LYS PRO ALA ASP LEU VAL SEQRES 7 B 263 ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN GLY THR SEQRES 8 B 263 MET THR LEU ALA GLU LEU SER ALA ALA ALA LEU GLN TYR SEQRES 9 B 263 SER ASP ASN THR ALA MET ASN LYS LEU ILE ALA GLN LEU SEQRES 10 B 263 GLY GLY PRO GLY GLY VAL THR ALA PHE ALA ARG ALA ILE SEQRES 11 B 263 GLY ASP GLU THR PHE ARG LEU ASP ARG THR ALA PRO THR SEQRES 12 B 263 LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP THR THR SEQRES 13 B 263 THR PRO ARG ALA MET ALA GLN THR LEU ARG GLN LEU THR SEQRES 14 B 263 LEU GLY HIS ALA LEU GLY GLU THR GLN ARG ALA GLN LEU SEQRES 15 B 263 VAL THR TRP LEU LYS GLY ASN THR THR GLY ALA ALA SER SEQRES 16 B 263 ILE ARG ALA GLY LEU PRO THR SER TRP THR VAL GLY ASP SEQRES 17 B 263 LYS THR GLY SER GLY ASP TYR GLY THR THR ASN ASP ILE SEQRES 18 B 263 ALA VAL ILE TRP PRO GLN GLY ARG ALA PRO LEU VAL LEU SEQRES 19 B 263 VAL THR TYR PHE THR GLN PRO GLN GLN ASN ALA GLU SER SEQRES 20 B 263 ARG ARG ASP VAL LEU ALA SER ALA ALA ARG ILE ILE ALA SEQRES 21 B 263 GLU GLY LEU MODRES 5VLE PCA A 25 GLN MODIFIED RESIDUE HET PCA A 25 8 HET JSD A 901 29 HET JSC A 902 32 HET JSD A 903 29 HET JSE A 904 32 HET K A 905 1 HET RU A 906 1 HET JSD B 301 29 HET JSE B 302 11 HET K B 303 1 HET PO4 B 304 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM JSD [(1,2,3,4,5-ETA)-1-(4-{[(4-CARBOXY-5,5-DIMETHYL-1,3- HETNAM 2 JSD THIAZOLIDIN-2-YL)METHYL]AMINO}-4-OXOBUTANOYL) HETNAM 3 JSD CYCLOPENTADIENYL][(1,2,3,4,5-ETA)- HETNAM 4 JSD CYCLOPENTADIENYL]RUTHENIUM HETNAM JSC [(1,2,3,4,5-ETA)-1-(4-{[CARBOXY(4-CARBOXY-5,5-DIMETHYL- HETNAM 2 JSC 1,3-THIAZOLIDIN-2-YL)METHYL]AMINO}-4-OXOBUTANOYL) HETNAM 3 JSC CYCLOPENTADIENYL][(1,2,3,4,5-ETA)- HETNAM 4 JSC CYCLOPENTADIENYL]RUTHENIUM HETNAM JSE [(1,2,3,4,5-ETA)-1-(4-{[CARBOXY(4-CARBOXY-5,5-DIMETHYL- HETNAM 2 JSE 1,3-THIAZOLIDIN-2-YL)METHYL]AMINO}-4-OXOBUTANOYL) HETNAM 3 JSE CYCLOPENTADIENYL][(1,2,3,4,5-ETA)- HETNAM 4 JSE CYCLOPENTADIENYL]RUTHENIUM HETNAM K POTASSIUM ION HETNAM RU RUTHENIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 PCA C5 H7 N O3 FORMUL 3 JSD 3(C21 H17 N2 O4 RU S) FORMUL 4 JSC C22 H17 N2 O6 RU S FORMUL 6 JSE 2(C22 H17 N2 O6 RU S) FORMUL 7 K 2(K 1+) FORMUL 8 RU RU 3+ FORMUL 12 PO4 O4 P 3- FORMUL 13 HOH *667(H2 O) HELIX 1 AA1 SER A 27 SER A 39 1 13 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 SER A 72 GLU A 85 1 14 HELIX 4 AA4 GLN A 89 ASN A 92 5 4 HELIX 5 AA5 LYS A 98 LEU A 102 5 5 HELIX 6 AA6 ILE A 108 VAL A 113 5 6 HELIX 7 AA7 LEU A 119 SER A 130 1 12 HELIX 8 AA8 ASP A 131 LEU A 142 1 12 HELIX 9 AA9 GLY A 144 ILE A 155 1 12 HELIX 10 AB1 PRO A 167 THR A 171 5 5 HELIX 11 AB2 THR A 182 LEU A 195 1 14 HELIX 12 AB3 GLY A 200 GLY A 213 1 14 HELIX 13 AB4 SER A 220 LEU A 225 5 6 HELIX 14 AB5 ARG A 275 GLY A 289 1 15 HELIX 15 AB6 VAL B 29 GLY B 41 1 13 HELIX 16 AB7 CYS B 69 THR B 71 5 3 HELIX 17 AB8 SER B 72 GLU B 85 1 14 HELIX 18 AB9 GLN B 89 ASN B 92 5 4 HELIX 19 AC1 LYS B 98 LEU B 102 5 5 HELIX 20 AC2 ILE B 108 HIS B 112 5 5 HELIX 21 AC3 LEU B 119 SER B 130 1 12 HELIX 22 AC4 ASP B 131 LEU B 142 1 12 HELIX 23 AC5 GLY B 144 ILE B 155 1 12 HELIX 24 AC6 PRO B 167 THR B 171 5 5 HELIX 25 AC7 THR B 182 LEU B 195 1 14 HELIX 26 AC8 GLY B 200 GLY B 213 1 14 HELIX 27 AC9 SER B 220 LEU B 225 5 6 HELIX 28 AD1 ARG B 275 GLU B 288 1 14 SHEET 1 AA1 5 THR A 55 TYR A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N ASP A 50 O THR A 55 SHEET 3 AA1 5 LEU A 259 THR A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 AA1 5 THR A 243 TRP A 251 -1 N ASP A 246 O THR A 263 SHEET 5 AA1 5 THR A 230 GLY A 238 -1 N GLY A 236 O ASN A 245 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 97 0 SHEET 2 AA3 2 GLY A 115 THR A 118 -1 O GLY A 115 N ILE A 97 SHEET 1 AA4 5 THR B 55 TYR B 60 0 SHEET 2 AA4 5 ARG B 43 ASP B 50 -1 N ASP B 50 O THR B 55 SHEET 3 AA4 5 LEU B 259 THR B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 AA4 5 THR B 243 TRP B 251 -1 N ILE B 250 O LEU B 259 SHEET 5 AA4 5 THR B 230 GLY B 238 -1 N THR B 230 O TRP B 251 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 PRO B 94 ILE B 97 0 SHEET 2 AA6 2 GLY B 115 THR B 118 -1 O GLY B 115 N ILE B 97 LINK C PCA A 25 N THR A 26 1555 1555 1.31 LINK O GLY A 238 K K A 905 1555 1555 2.64 LINK K K A 905 O HOH A1051 1555 1555 2.85 LINK K K A 905 O HOH A1062 1555 1555 2.73 LINK K K A 905 O HOH A1065 1555 1555 2.72 LINK K K A 905 O HOH A1141 1555 1555 2.99 LINK K K A 905 O HOH A1155 1555 1555 2.56 LINK O GLY B 238 K K B 303 1555 1555 2.64 LINK K K B 303 O HOH B 444 1555 1555 2.80 LINK K K B 303 O HOH B 485 1555 1555 2.63 LINK K K B 303 O HOH B 497 1555 1555 2.68 LINK K K B 303 O HOH B 500 1555 1555 2.69 LINK K K B 303 O BHOH B 632 1555 1555 2.83 LINK K K B 303 O HOH B 675 1555 1555 3.09 CISPEP 1 ALA A 166 PRO A 167 0 7.39 CISPEP 2 ALA B 166 PRO B 167 0 6.31 SITE 1 AC1 18 SER A 70 ASN A 104 SER A 130 ASN A 132 SITE 2 AC1 18 PRO A 167 ASN A 170 LYS A 234 THR A 235 SITE 3 AC1 18 GLY A 236 SER A 237 GLY A 238 ASP A 240 SITE 4 AC1 18 ARG A 256 ARG A 276 HOH A1020 HOH A1024 SITE 5 AC1 18 HOH A1065 HOH A1141 SITE 1 AC2 17 GLN A 31 LYS A 32 ALA A 35 LYS A 82 SITE 2 AC2 17 GLU A 85 THR A 86 ALA A 154 ILE A 155 SITE 3 AC2 17 GLN A 192 HIS A 197 ALA A 198 HOH A1079 SITE 4 AC2 17 HOH A1086 GLY B 143 GLY B 146 GLY B 147 SITE 5 AC2 17 HOH B 545 SITE 1 AC3 15 ILE A 49 ASN A 54 GLN A 56 LEU A 59 SITE 2 AC3 15 ARG A 184 GLN A 188 ARG A 191 JSE A 904 SITE 3 AC3 15 HOH A1074 HOH A1151 GLN B 83 GLN B 87 SITE 4 AC3 15 GLN B 93 GLN B 141 HOH B 575 SITE 1 AC4 18 ASN A 54 GLN A 56 ARG A 184 GLN A 188 SITE 2 AC4 18 ARG A 191 JSD A 903 HOH A1286 GLN B 83 SITE 3 AC4 18 GLN B 87 GLN B 93 ALA B 140 GLN B 141 SITE 4 AC4 18 LEU B 142 GLY B 143 ALA B 150 HOH B 506 SITE 5 AC4 18 HOH B 516 HOH B 575 SITE 1 AC5 6 GLY A 238 HOH A1051 HOH A1062 HOH A1065 SITE 2 AC5 6 HOH A1141 HOH A1155 SITE 1 AC6 1 PCA A 25 SITE 1 AC7 17 ASN B 104 SER B 130 ASN B 132 PRO B 167 SITE 2 AC7 17 ASN B 170 LYS B 234 THR B 235 GLY B 236 SITE 3 AC7 17 SER B 237 ASP B 240 ARG B 256 ARG B 276 SITE 4 AC7 17 HOH B 411 HOH B 443 HOH B 456 HOH B 500 SITE 5 AC7 17 HOH B 632 SITE 1 AC8 4 ILE B 108 GLU B 121 TYR B 129 HOH B 538 SITE 1 AC9 7 GLY B 238 HOH B 444 HOH B 485 HOH B 497 SITE 2 AC9 7 HOH B 500 HOH B 632 HOH B 675 SITE 1 AD1 6 ARG A 153 GLU A 158 HOH A1172 HOH A1323 SITE 2 AD1 6 HIS B 197 ARG B 204 CRYST1 44.745 106.418 47.611 90.00 102.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022349 0.000000 0.004906 0.00000 SCALE2 0.000000 0.009397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021504 0.00000 HETATM 1 N PCA A 25 -18.767 25.509 -3.039 0.49 13.16 N ANISOU 1 N PCA A 25 1779 1743 1478 516 446 100 N HETATM 2 CA PCA A 25 -19.442 24.509 -2.244 0.64 13.28 C ANISOU 2 CA PCA A 25 1795 1851 1400 769 600 258 C HETATM 3 CB PCA A 25 -20.655 24.176 -3.111 0.45 13.82 C ANISOU 3 CB PCA A 25 2063 1563 1624 400 376 286 C HETATM 4 CG PCA A 25 -20.162 24.516 -4.505 0.32 14.88 C ANISOU 4 CG PCA A 25 1839 2392 1424 543 420 -73 C HETATM 5 CD PCA A 25 -19.114 25.543 -4.289 0.46 14.83 C ANISOU 5 CD PCA A 25 1620 2500 1516 452 459 503 C HETATM 6 OE PCA A 25 -18.576 26.263 -5.142 0.69 25.48 O ANISOU 6 OE PCA A 25 1843 5200 2638 -209 277 2109 O HETATM 7 C PCA A 25 -18.517 23.325 -2.004 0.53 13.78 C ANISOU 7 C PCA A 25 2024 1958 1252 911 825 240 C HETATM 8 O PCA A 25 -17.733 22.966 -2.883 0.59 17.16 O ANISOU 8 O PCA A 25 2687 1876 1958 1150 1403 476 O