HEADER UNKNOWN FUNCTION 26-APR-17 5VM0 TITLE THE HAPTEN TRICLOCARBAN BOUND TO THE SINGLE DOMAIN CAMELID NANOBODY TITLE 2 VHH T9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMELID NANOBODY VHH T9; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, TRICLOCARBAN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.A.WOGULIS,M.D.WOGULIS,S.TABARES-DA ROSA,G.GONZALEZ-SAPIENZA, AUTHOR 2 D.K.WILSON REVDAT 4 04-OCT-23 5VM0 1 REMARK REVDAT 3 26-DEC-18 5VM0 1 JRNL REVDAT 2 21-NOV-18 5VM0 1 JRNL REVDAT 1 02-MAY-18 5VM0 0 JRNL AUTH S.TABARES-DA ROSA,L.A.WOGULIS,M.D.WOGULIS, JRNL AUTH 2 G.GONZALEZ-SAPIENZA,D.K.WILSON JRNL TITL STRUCTURE AND SPECIFICITY OF SEVERAL TRICLOCARBAN-BINDING JRNL TITL 2 SINGLE DOMAIN CAMELID ANTIBODY FRAGMENTS. JRNL REF J. MOL. RECOGNIT. V. 32 E2755 2019 JRNL REFN ISSN 1099-1352 JRNL PMID 30033524 JRNL DOI 10.1002/JMR.2755 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 24347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2002 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2725 ; 1.714 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;32.484 ;21.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;14.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;25.269 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1530 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1026 ; 1.298 ; 1.705 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1284 ; 1.972 ; 2.545 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 976 ; 2.143 ; 1.978 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3161 ; 5.263 ;15.313 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5VM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 38.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OL0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN STOCK SOLUTION WAS 11 MG/ML REMARK 280 WELL WAS 10% PEG 3000, 200 MM ZINC ACETATE, 100 MM SODIUM REMARK 280 ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.55650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.24250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.55650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.24250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 398 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 127 REMARK 465 GLY A 128 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 67 114.84 -37.49 REMARK 500 ALA A 94 168.06 177.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 405 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 406 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9EG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9EG B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VM6 RELATED DB: PDB REMARK 900 RELATED ID: 5VM4 RELATED DB: PDB REMARK 900 RELATED ID: 5VLV RELATED DB: PDB DBREF 5VM0 A 1 128 PDB 5VM0 5VM0 1 128 DBREF 5VM0 B 1 128 PDB 5VM0 5VM0 1 128 SEQRES 1 A 128 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 A 128 VAL GLN THR GLY ASP SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 A 128 SER GLY ARG THR TYR THR PRO TYR ALA MET ALA TRP PHE SEQRES 4 A 128 ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA GLY SEQRES 5 A 128 ILE GLY GLY ILE ASP GLY THR ALA ALA TYR ALA ASP SER SEQRES 6 A 128 VAL ARG GLY ARG ALA THR ILE SER ARG ASP SER ALA LYS SEQRES 7 A 128 LYS THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 A 128 ASP THR ALA VAL TYR SER CYS ALA THR ARG ALA SER MET SEQRES 9 A 128 GLN VAL LEU THR SER PRO ARG VAL TYR PRO ILE TRP GLY SEQRES 10 A 128 ARG GLY THR GLN VAL THR VAL SER SER PRO GLY SEQRES 1 B 128 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 B 128 VAL GLN THR GLY ASP SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 B 128 SER GLY ARG THR TYR THR PRO TYR ALA MET ALA TRP PHE SEQRES 4 B 128 ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA GLY SEQRES 5 B 128 ILE GLY GLY ILE ASP GLY THR ALA ALA TYR ALA ASP SER SEQRES 6 B 128 VAL ARG GLY ARG ALA THR ILE SER ARG ASP SER ALA LYS SEQRES 7 B 128 LYS THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 B 128 ASP THR ALA VAL TYR SER CYS ALA THR ARG ALA SER MET SEQRES 9 B 128 GLN VAL LEU THR SER PRO ARG VAL TYR PRO ILE TRP GLY SEQRES 10 B 128 ARG GLY THR GLN VAL THR VAL SER SER PRO GLY HET EDO A 201 4 HET 9EG A 202 19 HET EDO B 201 4 HET EDO B 202 4 HET 9EG B 203 19 HETNAM EDO 1,2-ETHANEDIOL HETNAM 9EG N-(4-CHLOROPHENYL)-N'-(3,4-DICHLOROPHENYL)UREA HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 9EG 2(C13 H9 CL3 N2 O) FORMUL 8 HOH *209(H2 O) HELIX 1 AA1 ASP A 64 ARG A 67 5 4 HELIX 2 AA2 LYS A 89 THR A 93 5 5 HELIX 3 AA3 SER A 109 TYR A 113 5 5 HELIX 4 AA4 ASP B 64 ARG B 67 5 4 HELIX 5 AA5 LYS B 89 THR B 93 5 5 HELIX 6 AA6 SER B 109 TYR B 113 5 5 SHEET 1 AA1 4 VAL A 4 SER A 9 0 SHEET 2 AA1 4 LEU A 20 GLY A 28 -1 O ALA A 25 N VAL A 7 SHEET 3 AA1 4 THR A 80 MET A 85 -1 O LEU A 83 N LEU A 22 SHEET 4 AA1 4 ALA A 70 ASP A 75 -1 N ASP A 75 O THR A 80 SHEET 1 AA2 6 GLY A 12 GLN A 15 0 SHEET 2 AA2 6 THR A 120 SER A 125 1 O THR A 123 N VAL A 14 SHEET 3 AA2 6 ALA A 94 THR A 100 -1 N TYR A 96 O THR A 120 SHEET 4 AA2 6 MET A 36 GLN A 41 -1 N PHE A 39 O SER A 97 SHEET 5 AA2 6 GLU A 48 GLY A 54 -1 O ALA A 51 N TRP A 38 SHEET 6 AA2 6 THR A 59 TYR A 62 -1 O ALA A 61 N GLY A 52 SHEET 1 AA3 4 GLY A 12 GLN A 15 0 SHEET 2 AA3 4 THR A 120 SER A 125 1 O THR A 123 N VAL A 14 SHEET 3 AA3 4 ALA A 94 THR A 100 -1 N TYR A 96 O THR A 120 SHEET 4 AA3 4 ILE A 115 TRP A 116 -1 O ILE A 115 N THR A 100 SHEET 1 AA4 4 VAL B 4 SER B 9 0 SHEET 2 AA4 4 LEU B 20 GLY B 28 -1 O SER B 23 N SER B 9 SHEET 3 AA4 4 THR B 80 MET B 85 -1 O MET B 85 N LEU B 20 SHEET 4 AA4 4 ALA B 70 ASP B 75 -1 N ASP B 75 O THR B 80 SHEET 1 AA5 6 GLY B 12 GLN B 15 0 SHEET 2 AA5 6 THR B 120 SER B 125 1 O THR B 123 N VAL B 14 SHEET 3 AA5 6 ALA B 94 THR B 100 -1 N TYR B 96 O THR B 120 SHEET 4 AA5 6 MET B 36 GLN B 41 -1 N PHE B 39 O SER B 97 SHEET 5 AA5 6 GLU B 48 GLY B 54 -1 O ALA B 51 N TRP B 38 SHEET 6 AA5 6 THR B 59 TYR B 62 -1 O ALA B 61 N GLY B 52 SHEET 1 AA6 4 GLY B 12 GLN B 15 0 SHEET 2 AA6 4 THR B 120 SER B 125 1 O THR B 123 N VAL B 14 SHEET 3 AA6 4 ALA B 94 THR B 100 -1 N TYR B 96 O THR B 120 SHEET 4 AA6 4 ILE B 115 TRP B 116 -1 O ILE B 115 N THR B 100 SSBOND 1 CYS A 24 CYS A 98 1555 1555 2.06 SSBOND 2 CYS B 24 CYS B 98 1555 1555 2.06 SITE 1 AC1 4 TYR A 62 HOH A 313 HOH A 376 TYR B 62 SITE 1 AC2 13 GLU A 3 VAL A 4 ALA A 26 THR A 30 SITE 2 AC2 13 TYR A 31 THR A 32 TYR A 34 MET A 36 SITE 3 AC2 13 LYS A 79 THR A 80 THR A 100 ARG A 101 SITE 4 AC2 13 ALA A 102 SITE 1 AC3 6 ALA B 61 TYR B 62 EDO B 202 HOH B 305 SITE 2 AC3 6 HOH B 350 HOH B 356 SITE 1 AC4 8 GLY B 11 GLY B 12 TYR B 62 THR B 120 SITE 2 AC4 8 GLN B 121 EDO B 201 HOH B 319 HOH B 328 SITE 1 AC5 15 MET A 104 GLU B 3 VAL B 4 ALA B 26 SITE 2 AC5 15 ARG B 29 THR B 30 TYR B 31 THR B 32 SITE 3 AC5 15 TYR B 34 MET B 36 LYS B 79 THR B 80 SITE 4 AC5 15 THR B 100 ARG B 101 ALA B 102 CRYST1 101.113 52.485 57.463 90.00 113.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009890 0.000000 0.004350 0.00000 SCALE2 0.000000 0.019053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019011 0.00000