HEADER TRANSFERASE 27-APR-17 5VMB TITLE CRYSTAL STRUCTURE OF A GLYCINE HYDROXYMETHYLTRANSFERASE FROM TITLE 2 ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: GLYA, GLYA2, A7M79_08275, A7M90_04720, A7N09_12635, SOURCE 5 A8A08_14715, A8G88_00905, AB895_0334, AB988_4249, ABUW_1333, SOURCE 6 APD06_10955, AZE33_14190, BGC29_02480, IX87_07645, LV38_04033; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, THF, SERINE PRODUCTION, PROTEIN PRODUCTION, ESSENTIALLITY KEYWDS 2 SCREEN, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5VMB 1 REMARK REVDAT 1 10-MAY-17 5VMB 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A GLYCINE HYDROXYMETHYLTRANSFERASE FROM JRNL TITL 2 ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8195 - 6.0186 0.95 1253 126 0.1489 0.1864 REMARK 3 2 6.0186 - 4.7799 1.00 1297 134 0.1666 0.2353 REMARK 3 3 4.7799 - 4.1765 1.00 1263 147 0.1480 0.1940 REMARK 3 4 4.1765 - 3.7950 1.00 1297 137 0.1642 0.2085 REMARK 3 5 3.7950 - 3.5232 1.00 1256 145 0.1751 0.2195 REMARK 3 6 3.5232 - 3.3156 1.00 1293 110 0.2052 0.2428 REMARK 3 7 3.3156 - 3.1496 1.00 1286 145 0.2345 0.2909 REMARK 3 8 3.1496 - 3.0126 1.00 1245 154 0.2279 0.3238 REMARK 3 9 3.0126 - 2.8966 1.00 1252 162 0.2351 0.2981 REMARK 3 10 2.8966 - 2.7967 1.00 1253 149 0.2445 0.3274 REMARK 3 11 2.7967 - 2.7093 1.00 1283 133 0.2493 0.3468 REMARK 3 12 2.7093 - 2.6319 1.00 1254 151 0.2492 0.2905 REMARK 3 13 2.6319 - 2.5626 1.00 1254 148 0.2613 0.3032 REMARK 3 14 2.5626 - 2.5001 1.00 1301 118 0.2863 0.3257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3009 REMARK 3 ANGLE : 0.874 4106 REMARK 3 CHIRALITY : 0.050 466 REMARK 3 PLANARITY : 0.006 548 REMARK 3 DIHEDRAL : 15.846 1770 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1927 41.0637 -17.6536 REMARK 3 T TENSOR REMARK 3 T11: 0.5843 T22: 0.9560 REMARK 3 T33: 0.6298 T12: 0.1770 REMARK 3 T13: 0.1070 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.5068 L22: 8.1762 REMARK 3 L33: 4.0868 L12: 1.4370 REMARK 3 L13: -0.0398 L23: 0.8558 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.2180 S13: -0.2667 REMARK 3 S21: -0.9702 S22: -0.0019 S23: -0.8791 REMARK 3 S31: 0.0980 S32: 0.6600 S33: -0.1283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3019 40.8541 -6.4053 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.9655 REMARK 3 T33: 0.5719 T12: -0.0474 REMARK 3 T13: 0.0246 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8739 L22: 7.5392 REMARK 3 L33: 4.5011 L12: 0.8076 REMARK 3 L13: 0.1447 L23: -1.6852 REMARK 3 S TENSOR REMARK 3 S11: 0.6438 S12: -0.6734 S13: 0.0459 REMARK 3 S21: 0.7292 S22: -0.8453 S23: 0.3301 REMARK 3 S31: -0.2004 S32: -0.0772 S33: 0.1271 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0794 39.4717 5.5174 REMARK 3 T TENSOR REMARK 3 T11: 0.6636 T22: 1.3412 REMARK 3 T33: 0.7250 T12: -0.2361 REMARK 3 T13: 0.1381 T23: -0.1496 REMARK 3 L TENSOR REMARK 3 L11: 1.8231 L22: 6.6003 REMARK 3 L33: 6.7937 L12: -0.1943 REMARK 3 L13: -0.2498 L23: -2.1213 REMARK 3 S TENSOR REMARK 3 S11: 0.3839 S12: -0.8642 S13: 0.2366 REMARK 3 S21: 1.4487 S22: -0.3808 S23: 0.5375 REMARK 3 S31: -0.4682 S32: -0.5617 S33: -0.0875 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8694 27.9442 10.8652 REMARK 3 T TENSOR REMARK 3 T11: 0.8506 T22: 1.5682 REMARK 3 T33: 0.7532 T12: -0.3433 REMARK 3 T13: 0.0819 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 1.4430 L22: 4.9124 REMARK 3 L33: 1.7552 L12: -0.0845 REMARK 3 L13: -0.3014 L23: -1.5365 REMARK 3 S TENSOR REMARK 3 S11: 0.3899 S12: -1.0716 S13: -0.2938 REMARK 3 S21: 1.3826 S22: -0.4750 S23: 0.5133 REMARK 3 S31: -0.0126 S32: -0.2157 S33: 0.0629 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1166 16.4357 -3.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.6592 T22: 0.9453 REMARK 3 T33: 0.6297 T12: -0.1504 REMARK 3 T13: -0.1569 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 1.3526 L22: 5.7613 REMARK 3 L33: 2.7227 L12: 0.3535 REMARK 3 L13: 0.6112 L23: -0.8742 REMARK 3 S TENSOR REMARK 3 S11: 0.4844 S12: -0.4176 S13: -0.4700 REMARK 3 S21: -0.2602 S22: -0.3503 S23: 0.3034 REMARK 3 S31: 0.8504 S32: -0.7096 S33: -0.1394 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0608 12.5327 -6.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.6355 T22: 0.4908 REMARK 3 T33: 0.7016 T12: -0.0075 REMARK 3 T13: -0.1520 T23: 0.1667 REMARK 3 L TENSOR REMARK 3 L11: 3.5322 L22: 5.3841 REMARK 3 L33: 8.3318 L12: -0.8355 REMARK 3 L13: 1.9877 L23: -2.0350 REMARK 3 S TENSOR REMARK 3 S11: 0.3509 S12: -0.1602 S13: -0.5605 REMARK 3 S21: -0.4363 S22: -0.2274 S23: -0.4228 REMARK 3 S31: 1.2090 S32: 0.0248 S33: -0.0880 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-17. REMARK 100 THE DEPOSITION ID IS D_1000227665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.815 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.492 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.51 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4P3M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACBAC.00008.A.B1.PW37629 AT 18.5 MG/ML REMARK 280 WITH 3 MM GLYCINE, 3 MM ADP, 2 MM MGCL2 AGAINST MORPHEUS SCREEN REMARK 280 CONDITION E5 10% PEG 10,000, 20% PEG 550 MME, 30 MM EACH REMARK 280 DIETHYLENEGLYCOL, TRIETHYLENEGLYCOL, TETRAETHYLENEGLYCOL, REMARK 280 PENTAETHYLENEGLYCOL, 0.1 M MOPS/HEPES PH 7.5, CRYSTAL TRACKING REMARK 280 ID 261070E5, UNIQUE PUCK ID EOB8-7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.56333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.12667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.56333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.12667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.92000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.99987 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 LEU A 120 REMARK 465 ALA A 121 REMARK 465 HIS A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 HIS A 125 REMARK 465 LEU A 126 REMARK 465 THR A 127 REMARK 465 HIS A 128 REMARK 465 GLY A 129 REMARK 465 ALA A 130 REMARK 465 LYS A 131 REMARK 465 VAL A 132 REMARK 465 SER A 133 REMARK 465 PHE A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 LYS A 137 REMARK 465 THR A 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 SER A 119 OG REMARK 470 GLN A 143 CG CD OE1 NE2 REMARK 470 ASN A 147 CG OD1 ND2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU A 163 CG CD1 CD2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ILE A 170 CG1 CG2 CD1 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 VAL A 212 CG1 CG2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 GLU A 395 CG CD OE1 OE2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 LYS A 417 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 89 OE1 GLN A 252 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 -141.17 -117.77 REMARK 500 ASN A 4 59.75 -116.76 REMARK 500 LYS A 61 58.18 -141.81 REMARK 500 MET A 201 33.28 -94.75 REMARK 500 HIS A 228 -158.62 -85.95 REMARK 500 LYS A 229 -134.27 64.86 REMARK 500 ASN A 244 99.73 -172.99 REMARK 500 ASN A 315 -140.58 -126.67 REMARK 500 VAL A 357 -53.93 -129.33 REMARK 500 THR A 358 169.24 63.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ACBAC.00008.A RELATED DB: TARGETTRACK DBREF 5VMB A 1 417 UNP V5VBJ2 V5VBJ2_ACIBA 1 417 SEQADV 5VMB MET A -7 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB ALA A -6 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A -5 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A -4 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A -3 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A -2 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A -1 UNP V5VBJ2 EXPRESSION TAG SEQADV 5VMB HIS A 0 UNP V5VBJ2 EXPRESSION TAG SEQRES 1 A 425 MET ALA HIS HIS HIS HIS HIS HIS MET PHE ALA ASN ILE SEQRES 2 A 425 SER ILE SER GLU PHE ASP PRO GLU LEU ALA GLN ALA ILE SEQRES 3 A 425 ALA SER GLU ASP GLU ARG GLN GLU ALA HIS ILE GLU LEU SEQRES 4 A 425 ILE ALA SER GLU ASN TYR CYS SER PRO ALA VAL MET GLU SEQRES 5 A 425 ALA GLN GLY SER LYS LEU THR ASN LYS TYR ALA GLU GLY SEQRES 6 A 425 TYR PRO GLY LYS ARG TYR TYR GLY GLY CYS GLU PHE VAL SEQRES 7 A 425 ASP VAL ILE GLU GLN MET ALA ILE ASP ARG ALA LYS GLU SEQRES 8 A 425 LEU PHE GLY ALA ASP TYR ALA ASN VAL GLN PRO HIS ALA SEQRES 9 A 425 GLY SER GLN ALA ASN SER ALA VAL TYR LEU ALA LEU LEU SEQRES 10 A 425 ASN PRO GLY ASP THR VAL LEU GLY MET SER LEU ALA HIS SEQRES 11 A 425 GLY GLY HIS LEU THR HIS GLY ALA LYS VAL SER PHE SER SEQRES 12 A 425 GLY LYS THR TYR ASN ALA VAL GLN TYR GLY LEU ASN ALA SEQRES 13 A 425 GLU THR GLY GLU ILE ASP TYR GLU GLU VAL GLU ARG LEU SEQRES 14 A 425 ALA LEU GLU HIS LYS PRO ARG MET ILE VAL ALA GLY PHE SEQRES 15 A 425 SER ALA TYR SER ARG VAL VAL ASP TRP GLN ARG PHE ARG SEQRES 16 A 425 ASP ILE ALA ASP LYS VAL GLY ALA TYR LEU PHE VAL ASP SEQRES 17 A 425 MET ALA HIS VAL ALA GLY LEU VAL ALA ALA GLY VAL TYR SEQRES 18 A 425 PRO ASN PRO VAL GLN ILE ALA ASP VAL THR THR THR THR SEQRES 19 A 425 THR HIS LYS THR LEU ARG GLY PRO ARG SER GLY LEU ILE SEQRES 20 A 425 LEU ALA LYS ALA ASN GLU GLU ILE GLU LYS LYS LEU GLN SEQRES 21 A 425 SER ALA VAL PHE PRO GLY ASN GLN GLY GLY PRO LEU MET SEQRES 22 A 425 HIS ALA ILE ALA ALA LYS ALA ILE CYS PHE LYS GLU ALA SEQRES 23 A 425 MET SER ASP ASP PHE LYS ALA TYR GLN GLN GLN VAL VAL SEQRES 24 A 425 LYS ASN ALA GLN ALA MET ALA GLU VAL PHE ILE ALA ARG SEQRES 25 A 425 GLY TYR ASP VAL VAL SER GLY GLY THR ASP ASN HIS LEU SEQRES 26 A 425 PHE LEU LEU SER LEU ILE LYS GLN ASP VAL THR GLY LYS SEQRES 27 A 425 ASP ALA ASP ALA TRP LEU GLY ALA ALA HIS ILE THR VAL SEQRES 28 A 425 ASN LYS ASN SER VAL PRO ASN ASP PRO ARG SER PRO PHE SEQRES 29 A 425 VAL THR SER GLY ILE ARG ILE GLY THR PRO ALA VAL THR SEQRES 30 A 425 THR ARG GLY PHE GLY GLU ALA GLU VAL ARG GLU LEU ALA SEQRES 31 A 425 GLY TRP ILE ALA ASP VAL ILE ASP SER LYS GLY ASP GLU SEQRES 32 A 425 LYS VAL ILE ALA ASP VAL LYS ALA LYS VAL GLU ALA VAL SEQRES 33 A 425 CYS ALA LYS PHE PRO VAL TYR ALA LYS FORMUL 2 HOH *22(H2 O) HELIX 1 AA1 SER A 6 ASP A 11 1 6 HELIX 2 AA2 ASP A 11 ALA A 27 1 17 HELIX 3 AA3 SER A 39 GLY A 47 1 9 HELIX 4 AA4 SER A 48 LYS A 53 5 6 HELIX 5 AA5 CYS A 67 GLY A 86 1 20 HELIX 6 AA6 ALA A 96 LEU A 109 1 14 HELIX 7 AA7 ASP A 154 LYS A 166 1 13 HELIX 8 AA8 ASP A 182 VAL A 193 1 12 HELIX 9 AA9 VAL A 204 ALA A 210 1 7 HELIX 10 AB1 HIS A 228 ARG A 232 5 5 HELIX 11 AB2 ASN A 244 PHE A 256 1 13 HELIX 12 AB3 LEU A 264 MET A 279 1 16 HELIX 13 AB4 SER A 280 ARG A 304 1 25 HELIX 14 AB5 SER A 310 GLY A 312 5 3 HELIX 15 AB6 THR A 328 ALA A 339 1 12 HELIX 16 AB7 THR A 365 ARG A 371 1 7 HELIX 17 AB8 GLY A 374 SER A 391 1 18 HELIX 18 AB9 ASP A 394 PHE A 412 1 19 SHEET 1 AA1 2 ILE A 29 GLU A 30 0 SHEET 2 AA1 2 ILE A 341 THR A 342 1 O THR A 342 N ILE A 29 SHEET 1 AA2 2 GLY A 57 TYR A 58 0 SHEET 2 AA2 2 LYS A 61 ARG A 62 -1 O LYS A 61 N TYR A 58 SHEET 1 AA3 7 TYR A 89 ASN A 91 0 SHEET 2 AA3 7 GLY A 237 ALA A 241 -1 O ILE A 239 N ASN A 91 SHEET 3 AA3 7 VAL A 222 THR A 226 -1 N THR A 223 O LEU A 240 SHEET 4 AA3 7 TYR A 196 ASP A 200 1 N VAL A 199 O VAL A 222 SHEET 5 AA3 7 MET A 169 ALA A 172 1 N ALA A 172 O ASP A 200 SHEET 6 AA3 7 THR A 114 MET A 118 1 N LEU A 116 O VAL A 171 SHEET 7 AA3 7 ASN A 140 TYR A 144 1 O VAL A 142 N VAL A 115 SHEET 1 AA4 2 LEU A 146 ASN A 147 0 SHEET 2 AA4 2 GLU A 152 ILE A 153 -1 O GLU A 152 N ASN A 147 SHEET 1 AA5 4 ASP A 307 VAL A 308 0 SHEET 2 AA5 4 LEU A 317 SER A 321 -1 O SER A 321 N ASP A 307 SHEET 3 AA5 4 GLY A 360 GLY A 364 -1 O ILE A 361 N LEU A 320 SHEET 4 AA5 4 ASN A 344 LYS A 345 -1 N ASN A 344 O ARG A 362 CISPEP 1 PHE A 256 PRO A 257 0 5.57 CRYST1 95.840 95.840 109.690 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010434 0.006024 0.000000 0.00000 SCALE2 0.000000 0.012048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009117 0.00000