HEADER OXIDOREDUCTASE 27-APR-17 5VML TITLE CRYSTAL STRUCTURE OF ACETOACETYL-COA REDUCTASE FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI 1710B WITH BOUND NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOACETYL-COA REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.36; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1710B); SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: PHBB-1, BURPS1710B_2329; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUPSA.00010.E.A1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5VML 1 REMARK REVDAT 1 24-MAY-17 5VML 0 JRNL AUTH D.M.DRANOW,D.G.CONRADY,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ACETOACETYL-COA REDUCTASE FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI 1710B WITH BOUND NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2744) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9061 - 4.0964 1.00 2119 164 0.1357 0.1593 REMARK 3 2 4.0964 - 3.2516 1.00 2001 134 0.1184 0.1275 REMARK 3 3 3.2516 - 2.8407 1.00 1955 142 0.1406 0.1775 REMARK 3 4 2.8407 - 2.5810 1.00 1948 149 0.1508 0.1882 REMARK 3 5 2.5810 - 2.3960 1.00 1911 154 0.1458 0.1581 REMARK 3 6 2.3960 - 2.2547 1.00 1896 165 0.1364 0.1572 REMARK 3 7 2.2547 - 2.1418 1.00 1918 130 0.1345 0.1684 REMARK 3 8 2.1418 - 2.0486 1.00 1927 138 0.1482 0.1860 REMARK 3 9 2.0486 - 1.9697 1.00 1921 143 0.1504 0.1899 REMARK 3 10 1.9697 - 1.9017 1.00 1865 143 0.1605 0.1860 REMARK 3 11 1.9017 - 1.8423 1.00 1876 146 0.1647 0.1946 REMARK 3 12 1.8423 - 1.7896 1.00 1909 138 0.1788 0.2264 REMARK 3 13 1.7896 - 1.7425 1.00 1873 149 0.1979 0.2249 REMARK 3 14 1.7425 - 1.7000 0.93 1759 135 0.2247 0.2642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2006 REMARK 3 ANGLE : 0.772 2735 REMARK 3 CHIRALITY : 0.054 304 REMARK 3 PLANARITY : 0.004 371 REMARK 3 DIHEDRAL : 15.162 1210 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8303 15.0133 20.5202 REMARK 3 T TENSOR REMARK 3 T11: 0.1118 T22: 0.1379 REMARK 3 T33: 0.0860 T12: -0.0068 REMARK 3 T13: 0.0002 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.5054 L22: 0.9759 REMARK 3 L33: 1.8195 L12: 0.4433 REMARK 3 L13: -0.1484 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: -0.1597 S13: 0.0628 REMARK 3 S21: 0.0708 S22: 0.0307 S23: -0.0349 REMARK 3 S31: -0.0646 S32: 0.2362 S33: -0.0422 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2910 6.7734 19.1785 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.1195 REMARK 3 T33: 0.0970 T12: 0.0093 REMARK 3 T13: 0.0027 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5587 L22: 1.1737 REMARK 3 L33: 0.4917 L12: 0.3250 REMARK 3 L13: 0.0225 L23: 0.1844 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.0961 S13: -0.0121 REMARK 3 S21: 0.0518 S22: 0.0204 S23: -0.0562 REMARK 3 S31: 0.0074 S32: -0.0118 S33: -0.0397 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1816 3.4360 5.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.1153 REMARK 3 T33: 0.0891 T12: 0.0060 REMARK 3 T13: -0.0168 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.6904 L22: 1.7528 REMARK 3 L33: 1.0693 L12: -0.7079 REMARK 3 L13: 0.0170 L23: 0.6544 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0800 S13: -0.1016 REMARK 3 S21: 0.1420 S22: 0.1274 S23: -0.1049 REMARK 3 S31: 0.1512 S32: 0.1141 S33: -0.0690 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3EZL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00010.E.A1.PS00061 AT 19.3 MG/ML REMARK 280 INCUBATED WITH 4 MM NADP, MIXED 1:1 WITH MORPHEUS(C8): 12.5% (W/ REMARK 280 V) PEG-1000, 12.5% (W/V) PEG-3350, 12.5% (V/V) MPD, 0.1 M MOPS/ REMARK 280 HEPES-NA, PH = 7.5, 0.03 M EACH SODIUM NITRATE, DISODIUM REMARK 280 HYDROGEN PHOSPHATE, AMMONIUM SULFATE, CRYSTALS WERE SOAKED FOR REMARK 280 24 HOURS WITH 5 MM NADP IN WELL SOLUTION, HARVESTED DIRECTLY, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.15500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.63000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.15500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.63000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.15500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.15500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.63000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.15500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.15500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.63000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 662 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 4 OG REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 97 140.48 -173.84 REMARK 500 SER A 141 -134.01 -100.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPSA.00010.E RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 3EZL RELATED DB: PDB REMARK 900 SAME PROTEIN BUT WITHOUT NADP (APO) DBREF 5VML A 1 248 UNP Q3JRS9 Q3JRS9_BURP1 1 248 SEQADV 5VML MET A -20 UNP Q3JRS9 INITIATING METHIONINE SEQADV 5VML ALA A -19 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -18 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -17 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -16 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -15 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -14 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML HIS A -13 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML MET A -12 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLY A -11 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML THR A -10 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML LEU A -9 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLU A -8 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML ALA A -7 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLN A -6 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML THR A -5 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLN A -4 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLY A -3 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML PRO A -2 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML GLY A -1 UNP Q3JRS9 EXPRESSION TAG SEQADV 5VML SER A 0 UNP Q3JRS9 EXPRESSION TAG SEQRES 1 A 269 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 269 ALA GLN THR GLN GLY PRO GLY SER MET VAL MET SER GLN SEQRES 3 A 269 ARG ILE ALA TYR VAL THR GLY GLY MET GLY GLY ILE GLY SEQRES 4 A 269 THR SER ILE CYS GLN ARG LEU HIS LYS ASP GLY PHE ARG SEQRES 5 A 269 VAL VAL ALA GLY CYS GLY PRO ASN SER PRO ARG ARG VAL SEQRES 6 A 269 LYS TRP LEU GLU ASP GLN LYS ALA LEU GLY PHE ASP PHE SEQRES 7 A 269 TYR ALA SER GLU GLY ASN VAL GLY ASP TRP ASP SER THR SEQRES 8 A 269 LYS GLN ALA PHE ASP LYS VAL LYS ALA GLU VAL GLY GLU SEQRES 9 A 269 ILE ASP VAL LEU VAL ASN ASN ALA GLY ILE THR ARG ASP SEQRES 10 A 269 VAL VAL PHE ARG LYS MET THR ARG GLU ASP TRP GLN ALA SEQRES 11 A 269 VAL ILE ASP THR ASN LEU THR SER LEU PHE ASN VAL THR SEQRES 12 A 269 LYS GLN VAL ILE ASP GLY MET VAL GLU ARG GLY TRP GLY SEQRES 13 A 269 ARG ILE ILE ASN ILE SER SER VAL ASN GLY GLN LYS GLY SEQRES 14 A 269 GLN PHE GLY GLN THR ASN TYR SER THR ALA LYS ALA GLY SEQRES 15 A 269 ILE HIS GLY PHE THR MET SER LEU ALA GLN GLU VAL ALA SEQRES 16 A 269 THR LYS GLY VAL THR VAL ASN THR VAL SER PRO GLY TYR SEQRES 17 A 269 ILE GLY THR ASP MET VAL LYS ALA ILE ARG PRO ASP VAL SEQRES 18 A 269 LEU GLU LYS ILE VAL ALA THR ILE PRO VAL ARG ARG LEU SEQRES 19 A 269 GLY SER PRO ASP GLU ILE GLY SER ILE VAL ALA TRP LEU SEQRES 20 A 269 ALA SER GLU GLU SER GLY PHE SER THR GLY ALA ASP PHE SEQRES 21 A 269 SER LEU ASN GLY GLY LEU HIS MET GLY HET NAP A 301 48 HET MPD A 302 8 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 MPD C6 H14 O2 FORMUL 4 HOH *282(H2 O) HELIX 1 AA1 GLY A 15 ASP A 28 1 14 HELIX 2 AA2 ARG A 42 LEU A 53 1 12 HELIX 3 AA3 ASP A 66 VAL A 81 1 16 HELIX 4 AA4 VAL A 98 MET A 102 5 5 HELIX 5 AA5 THR A 103 LEU A 115 1 13 HELIX 6 AA6 LEU A 115 LYS A 123 1 9 HELIX 7 AA7 VAL A 125 GLY A 133 1 9 HELIX 8 AA8 SER A 142 GLY A 148 1 7 HELIX 9 AA9 GLN A 152 ALA A 174 1 23 HELIX 10 AB1 THR A 190 ALA A 195 1 6 HELIX 11 AB2 ARG A 197 THR A 207 1 11 HELIX 12 AB3 SER A 215 SER A 228 1 14 SHEET 1 AA1 7 TYR A 58 GLU A 61 0 SHEET 2 AA1 7 ARG A 31 CYS A 36 1 N ALA A 34 O TYR A 58 SHEET 3 AA1 7 ILE A 7 VAL A 10 1 N VAL A 10 O GLY A 35 SHEET 4 AA1 7 VAL A 86 ASN A 89 1 O VAL A 88 N TYR A 9 SHEET 5 AA1 7 GLY A 135 ILE A 140 1 O ILE A 138 N LEU A 87 SHEET 6 AA1 7 VAL A 178 PRO A 185 1 O ASN A 181 N ASN A 139 SHEET 7 AA1 7 ASP A 238 LEU A 241 1 O PHE A 239 N SER A 184 SITE 1 AC1 39 GLY A 12 GLY A 15 GLY A 16 ILE A 17 SITE 2 AC1 39 CYS A 36 GLY A 37 SER A 40 ARG A 42 SITE 3 AC1 39 GLY A 62 ASN A 63 VAL A 64 ASN A 90 SITE 4 AC1 39 ALA A 91 GLY A 92 ILE A 93 THR A 113 SITE 5 AC1 39 ILE A 140 SER A 141 SER A 142 TYR A 155 SITE 6 AC1 39 LYS A 159 PRO A 185 GLY A 186 TYR A 187 SITE 7 AC1 39 ILE A 188 HOH A 405 HOH A 410 HOH A 413 SITE 8 AC1 39 HOH A 414 HOH A 419 HOH A 420 HOH A 425 SITE 9 AC1 39 HOH A 443 HOH A 455 HOH A 475 HOH A 483 SITE 10 AC1 39 HOH A 487 HOH A 530 HOH A 593 SITE 1 AC2 8 VAL A 44 LEU A 47 GLU A 48 TRP A 67 SITE 2 AC2 8 MET A 102 THR A 103 ARG A 104 LYS A 123 CRYST1 66.310 66.310 115.260 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015081 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008676 0.00000