HEADER TRANSCRIPTION/DNA 28-APR-17 5VMV TITLE KAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH ITS TITLE 2 DOUBLE CPG-METHYLATED DNA CONSENSUS BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 471-604; COMPND 5 SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*GP*CP*TP*TP*CP*TP*(5CM)P*GP*(5CM) COMPND 9 P*GP*AP*GP*AP*AP*GP*CP*A)-3'); COMPND 10 CHAIN: D, E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB33, KAISO, ZNF348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) [DNAY]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DNA METHYLATION, ZINC FINGER, TRANSCRIPTIONAL REGULATOR, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.NIKOLOVA,R.L.STANFIELD,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT REVDAT 4 04-OCT-23 5VMV 1 REMARK REVDAT 3 23-MAR-22 5VMV 1 REMARK REVDAT 2 25-APR-18 5VMV 1 JRNL REVDAT 1 04-APR-18 5VMV 0 JRNL AUTH E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT JRNL TITL CH···O HYDROGEN BONDS MEDIATE HIGHLY SPECIFIC JRNL TITL 2 RECOGNITION OF METHYLATED CPG SITES BY THE ZINC FINGER JRNL TITL 3 PROTEIN KAISO. JRNL REF BIOCHEMISTRY V. 57 2109 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29546986 JRNL DOI 10.1021/ACS.BIOCHEM.8B00065 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 17361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4518 - 5.2940 0.99 1542 172 0.2183 0.2494 REMARK 3 2 5.2940 - 4.2029 1.00 1471 163 0.1754 0.2115 REMARK 3 3 4.2029 - 3.6719 1.00 1432 159 0.1736 0.2236 REMARK 3 4 3.6719 - 3.3363 1.00 1439 161 0.1889 0.2486 REMARK 3 5 3.3363 - 3.0972 1.00 1437 159 0.2198 0.2823 REMARK 3 6 3.0972 - 2.9147 1.00 1410 156 0.2207 0.2565 REMARK 3 7 2.9147 - 2.7687 1.00 1409 157 0.2133 0.2685 REMARK 3 8 2.7687 - 2.6482 0.98 1412 157 0.2320 0.2688 REMARK 3 9 2.6482 - 2.5463 0.95 1341 149 0.2353 0.2628 REMARK 3 10 2.5463 - 2.4584 0.84 1175 131 0.2344 0.3080 REMARK 3 11 2.4584 - 2.3816 0.61 863 97 0.2323 0.2331 REMARK 3 12 2.3816 - 2.3135 0.50 692 77 0.2229 0.2967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2116 REMARK 3 ANGLE : 1.203 3012 REMARK 3 CHIRALITY : 0.050 315 REMARK 3 PLANARITY : 0.005 221 REMARK 3 DIHEDRAL : 27.666 822 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 481 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6940 4.8865 27.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.8813 T22: 0.1874 REMARK 3 T33: 1.2898 T12: 0.0558 REMARK 3 T13: -0.0204 T23: -0.1295 REMARK 3 L TENSOR REMARK 3 L11: 0.7296 L22: 5.4921 REMARK 3 L33: 1.9339 L12: -1.7920 REMARK 3 L13: -0.6677 L23: 0.4051 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: -0.2972 S13: -0.6070 REMARK 3 S21: 0.3474 S22: 0.0726 S23: -0.0977 REMARK 3 S31: 0.4379 S32: 0.1881 S33: -0.3006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0317 9.4900 21.9111 REMARK 3 T TENSOR REMARK 3 T11: 0.7243 T22: 0.0781 REMARK 3 T33: 1.0532 T12: 0.0443 REMARK 3 T13: 0.0036 T23: -0.1634 REMARK 3 L TENSOR REMARK 3 L11: 3.8594 L22: 4.0473 REMARK 3 L33: 4.7964 L12: 2.6836 REMARK 3 L13: 2.4378 L23: 1.8570 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: 0.2245 S13: -0.4898 REMARK 3 S21: -0.1187 S22: 0.2012 S23: 0.2610 REMARK 3 S31: 0.5084 S32: 0.2725 S33: -0.2064 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5258 18.7422 23.5479 REMARK 3 T TENSOR REMARK 3 T11: 0.4353 T22: 0.1909 REMARK 3 T33: 1.4447 T12: -0.1216 REMARK 3 T13: -0.0346 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.5135 L22: 2.5373 REMARK 3 L33: 1.3688 L12: -0.5324 REMARK 3 L13: 0.6468 L23: 0.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: -0.2746 S13: -0.7745 REMARK 3 S21: -0.0790 S22: 0.2894 S23: 1.4217 REMARK 3 S31: 0.8630 S32: -0.2982 S33: 0.0951 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1254 24.7628 18.0569 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.0277 REMARK 3 T33: 1.3126 T12: 0.0207 REMARK 3 T13: -0.2811 T23: -0.1432 REMARK 3 L TENSOR REMARK 3 L11: 1.0853 L22: 1.5758 REMARK 3 L33: 1.2808 L12: 1.2384 REMARK 3 L13: 0.4669 L23: 0.1242 REMARK 3 S TENSOR REMARK 3 S11: 0.1821 S12: 0.0191 S13: -0.3320 REMARK 3 S21: -0.5424 S22: -0.0075 S23: 0.8931 REMARK 3 S31: 0.3983 S32: -0.2259 S33: -0.2582 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 534 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8230 31.6496 21.0907 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.2296 REMARK 3 T33: 0.6598 T12: 0.0280 REMARK 3 T13: -0.0380 T23: -0.0815 REMARK 3 L TENSOR REMARK 3 L11: 1.5341 L22: 2.2140 REMARK 3 L33: 4.7098 L12: -1.1944 REMARK 3 L13: 0.4977 L23: -2.2913 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.1025 S13: -0.4803 REMARK 3 S21: -0.0348 S22: 0.3776 S23: 0.3213 REMARK 3 S31: 0.0726 S32: -0.3137 S33: -0.2803 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 546 THROUGH 573 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2438 41.5289 19.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1561 REMARK 3 T33: 0.4016 T12: 0.0481 REMARK 3 T13: -0.0507 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 7.6557 L22: 0.7197 REMARK 3 L33: 1.7631 L12: 0.8547 REMARK 3 L13: -2.0680 L23: 0.6410 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.3741 S13: -0.0117 REMARK 3 S21: -0.1465 S22: -0.0274 S23: 0.3759 REMARK 3 S31: 0.0700 S32: 0.0418 S33: -0.0293 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 574 THROUGH 583 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0923 38.5425 24.4438 REMARK 3 T TENSOR REMARK 3 T11: 0.4416 T22: 0.4016 REMARK 3 T33: 0.7014 T12: 0.0223 REMARK 3 T13: -0.0748 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 6.2006 L22: 5.0837 REMARK 3 L33: 6.5144 L12: -3.1204 REMARK 3 L13: -5.5345 L23: 5.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.5048 S12: -1.2796 S13: -1.0846 REMARK 3 S21: 1.4199 S22: 0.4116 S23: -0.8843 REMARK 3 S31: 1.0335 S32: 0.8363 S33: 0.2301 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 584 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2746 38.8653 29.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.1769 REMARK 3 T33: 0.5322 T12: 0.0602 REMARK 3 T13: 0.0335 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 3.9535 L22: 3.9985 REMARK 3 L33: 3.3327 L12: -3.8102 REMARK 3 L13: 0.5477 L23: 0.5416 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: -0.7279 S13: -0.8330 REMARK 3 S21: 0.5891 S22: 0.0881 S23: 0.3924 REMARK 3 S31: 0.3563 S32: -0.0884 S33: -0.1349 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7199 29.6160 10.6758 REMARK 3 T TENSOR REMARK 3 T11: 0.7033 T22: 0.4702 REMARK 3 T33: 0.4919 T12: 0.1370 REMARK 3 T13: 0.1831 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.8524 L22: 4.3756 REMARK 3 L33: 7.3931 L12: -0.6478 REMARK 3 L13: 3.0956 L23: -4.8063 REMARK 3 S TENSOR REMARK 3 S11: 0.4215 S12: 0.7704 S13: 0.2370 REMARK 3 S21: -0.2978 S22: 0.1906 S23: 0.7560 REMARK 3 S31: -0.5467 S32: 0.3205 S33: -0.4908 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4267 22.1114 39.3357 REMARK 3 T TENSOR REMARK 3 T11: 1.3790 T22: 0.8066 REMARK 3 T33: 0.9347 T12: 0.1695 REMARK 3 T13: 0.4324 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 6.3470 L22: 0.9323 REMARK 3 L33: 5.5691 L12: 1.5558 REMARK 3 L13: 1.1935 L23: -0.8937 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -1.7596 S13: 0.3935 REMARK 3 S21: 2.4678 S22: 0.3806 S23: 0.8939 REMARK 3 S31: 0.7411 S32: -1.0670 S33: -0.4108 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 19 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4049 19.9568 43.7955 REMARK 3 T TENSOR REMARK 3 T11: 1.7060 T22: 1.1368 REMARK 3 T33: 1.0664 T12: -0.0194 REMARK 3 T13: 0.5120 T23: 0.3701 REMARK 3 L TENSOR REMARK 3 L11: 5.4242 L22: 1.0079 REMARK 3 L33: 0.8049 L12: -1.3399 REMARK 3 L13: -1.8508 L23: 0.7959 REMARK 3 S TENSOR REMARK 3 S11: -0.4082 S12: -2.5111 S13: -0.7050 REMARK 3 S21: 1.9804 S22: 0.0378 S23: 0.2373 REMARK 3 S31: 1.9877 S32: 0.3653 S33: 0.9646 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 27 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3464 25.7129 13.8652 REMARK 3 T TENSOR REMARK 3 T11: 0.9167 T22: 0.5660 REMARK 3 T33: 0.4856 T12: -0.2195 REMARK 3 T13: 0.0959 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 8.1278 L22: 6.0268 REMARK 3 L33: 2.6601 L12: -3.4594 REMARK 3 L13: -1.3332 L23: 2.1146 REMARK 3 S TENSOR REMARK 3 S11: -0.2648 S12: 1.8078 S13: -0.3831 REMARK 3 S21: -1.5727 S22: 0.1095 S23: -0.0165 REMARK 3 S31: 0.2552 S32: -0.2965 S33: 0.2069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000226559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17383 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.313 REMARK 200 RESOLUTION RANGE LOW (A) : 45.443 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08636 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27650 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 4F6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M AMMONIUM REMARK 280 ACETATE, 30 % (V/V) 2-PROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.10950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.89600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.10950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.89600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.10950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.89600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.10950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.89600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 704 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 846 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 ALA A 472 REMARK 465 ASN A 473 REMARK 465 LYS A 474 REMARK 465 ARG A 475 REMARK 465 MET A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 HIS A 480 REMARK 465 TYR A 597 REMARK 465 ALA A 598 REMARK 465 TYR A 599 REMARK 465 LEU A 600 REMARK 465 SER A 601 REMARK 465 ASP A 602 REMARK 465 ARG A 603 REMARK 465 SER A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 527 O HOH A 803 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA E 30 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 555 -12.04 -140.61 REMARK 500 SER A 574 52.20 32.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 496 SG REMARK 620 2 CYS A 499 SG 120.2 REMARK 620 3 HIS A 512 NE2 109.0 98.6 REMARK 620 4 HIS A 516 NE2 111.8 111.0 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 524 SG REMARK 620 2 CYS A 527 SG 121.9 REMARK 620 3 HIS A 540 NE2 111.4 107.9 REMARK 620 4 HIS A 544 NE2 108.3 110.0 93.7 REMARK 620 5 HOH A 803 O 177.5 56.8 71.1 70.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 552 SG REMARK 620 2 CYS A 555 SG 112.9 REMARK 620 3 HIS A 568 NE2 114.2 110.3 REMARK 620 4 HIS A 573 NE2 100.6 113.7 104.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VMW RELATED DB: PDB REMARK 900 RELATED ID: 5VMU RELATED DB: PDB REMARK 900 RELATED ID: 5VMX RELATED DB: PDB REMARK 900 RELATED ID: 5VMY RELATED DB: PDB REMARK 900 RELATED ID: 5VMZ RELATED DB: PDB DBREF 5VMV A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 DBREF 5VMV D 1 18 PDB 5VMV 5VMV 1 18 DBREF 5VMV E 19 36 PDB 5VMV 5VMV 19 36 SEQRES 1 A 134 MET ALA ASN LYS ARG MET LYS VAL LYS HIS ASP ASP HIS SEQRES 2 A 134 TYR GLU LEU ILE VAL ASP GLY ARG VAL TYR TYR ILE CYS SEQRES 3 A 134 ILE VAL CYS LYS ARG SER TYR VAL CYS LEU THR SER LEU SEQRES 4 A 134 ARG ARG HIS PHE ASN ILE HIS SER TRP GLU LYS LYS TYR SEQRES 5 A 134 PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO LEU ALA GLU SEQRES 6 A 134 TYR ARG THR LYS HIS GLU ILE HIS HIS THR GLY GLU ARG SEQRES 7 A 134 ARG TYR GLN CYS LEU ALA CYS GLY LYS SER PHE ILE ASN SEQRES 8 A 134 TYR GLN PHE MET SER SER HIS ILE LYS SER VAL HIS SER SEQRES 9 A 134 GLN ASP PRO SER GLY ASP SER LYS LEU TYR ARG LEU HIS SEQRES 10 A 134 PRO CYS ARG SER LEU GLN ILE ARG GLN TYR ALA TYR LEU SEQRES 11 A 134 SER ASP ARG SER SEQRES 1 D 18 DT DG DC DT DT DC DT 5CM DG 5CM DG DA DG SEQRES 2 D 18 DA DA DG DC DA SEQRES 1 E 18 DT DG DC DT DT DC DT 5CM DG 5CM DG DA DG SEQRES 2 E 18 DA DA DG DC DA HET 5CM D 8 20 HET 5CM D 10 20 HET 5CM E 26 20 HET 5CM E 28 20 HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL A 704 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 5CM 4(C10 H16 N3 O7 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *76(H2 O) HELIX 1 AA1 CYS A 505 TRP A 518 1 14 HELIX 2 AA2 LEU A 533 GLY A 546 1 14 HELIX 3 AA3 ASN A 561 SER A 574 1 14 SHEET 1 AA1 3 HIS A 483 VAL A 488 0 SHEET 2 AA1 3 ARG A 491 CYS A 496 -1 O ILE A 495 N TYR A 484 SHEET 3 AA1 3 SER A 502 TYR A 503 -1 O TYR A 503 N TYR A 494 SHEET 1 AA2 2 TYR A 522 PRO A 523 0 SHEET 2 AA2 2 VAL A 530 PHE A 531 -1 O PHE A 531 N TYR A 522 SHEET 1 AA3 3 SER A 558 PHE A 559 0 SHEET 2 AA3 3 TYR A 550 CYS A 552 -1 N TYR A 550 O PHE A 559 SHEET 3 AA3 3 TYR A 584 LEU A 586 -1 O ARG A 585 N GLN A 551 LINK O3' DT D 7 P 5CM D 8 1555 1555 1.60 LINK O3' 5CM D 8 P DG D 9 1555 1555 1.60 LINK O3' DG D 9 P 5CM D 10 1555 1555 1.61 LINK O3' 5CM D 10 P DG D 11 1555 1555 1.61 LINK O3' DT E 25 P 5CM E 26 1555 1555 1.60 LINK O3' 5CM E 26 P DG E 27 1555 1555 1.60 LINK O3' DG E 27 P 5CM E 28 1555 1555 1.61 LINK O3' 5CM E 28 P DG E 29 1555 1555 1.60 LINK SG CYS A 496 ZN ZN A 701 1555 1555 2.28 LINK SG CYS A 499 ZN ZN A 701 1555 1555 2.19 LINK NE2 HIS A 512 ZN ZN A 701 1555 1555 1.96 LINK NE2 HIS A 516 ZN ZN A 701 1555 1555 1.95 LINK SG CYS A 524 ZN ZN A 702 1555 1555 2.21 LINK SG CYS A 527 ZN ZN A 702 1555 1555 2.31 LINK NE2 HIS A 540 ZN ZN A 702 1555 1555 2.03 LINK NE2 HIS A 544 ZN ZN A 702 1555 1555 2.12 LINK SG CYS A 552 ZN ZN A 703 1555 1555 2.27 LINK SG CYS A 555 ZN ZN A 703 1555 1555 2.31 LINK NE2 HIS A 568 ZN ZN A 703 1555 1555 1.93 LINK NE2 HIS A 573 ZN ZN A 703 1555 1555 2.02 LINK ZN ZN A 702 O HOH A 803 1555 1555 2.17 SITE 1 AC1 4 CYS A 496 CYS A 499 HIS A 512 HIS A 516 SITE 1 AC2 5 CYS A 524 CYS A 527 HIS A 540 HIS A 544 SITE 2 AC2 5 HOH A 803 SITE 1 AC3 4 CYS A 552 CYS A 555 HIS A 568 HIS A 573 SITE 1 AC4 1 ARG A 548 CRYST1 44.219 183.792 104.566 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009563 0.00000