HEADER TRANSCRIPTION/DNA 28-APR-17 5VMY TITLE KAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A HEMI TITLE 2 CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE TITLE 3 (KBS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM) COMPND 8 P*GP*AP*AP*TP*AP*AP*CP*G)-3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*CP*GP*TP*TP*AP*TP*TP*CP*GP*CP*GP*GP*GP*AP*AP*GP*CP*A)-3'); COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB33, KAISO, ZNF348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) [DNAY]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA METHYLATION, ZINC FINGER, TRANSCRIPTIONAL REGULATOR, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.NIKOLOVA,R.L.STANFIELD,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT REVDAT 4 04-OCT-23 5VMY 1 REMARK REVDAT 3 23-MAR-22 5VMY 1 SOURCE REVDAT 2 25-APR-18 5VMY 1 JRNL REVDAT 1 04-APR-18 5VMY 0 JRNL AUTH E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT JRNL TITL CH···O HYDROGEN BONDS MEDIATE HIGHLY SPECIFIC JRNL TITL 2 RECOGNITION OF METHYLATED CPG SITES BY THE ZINC FINGER JRNL TITL 3 PROTEIN KAISO. JRNL REF BIOCHEMISTRY V. 57 2109 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29546986 JRNL DOI 10.1021/ACS.BIOCHEM.8B00065 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0521 - 4.9340 0.99 1889 211 0.1557 0.1622 REMARK 3 2 4.9340 - 3.9171 0.99 1786 199 0.1307 0.1551 REMARK 3 3 3.9171 - 3.4222 1.00 1789 198 0.1440 0.1680 REMARK 3 4 3.4222 - 3.1094 1.00 1786 198 0.1701 0.2021 REMARK 3 5 3.1094 - 2.8866 1.00 1766 197 0.1904 0.2259 REMARK 3 6 2.8866 - 2.7164 0.99 1737 193 0.1960 0.2335 REMARK 3 7 2.7164 - 2.5804 1.00 1753 194 0.1817 0.2005 REMARK 3 8 2.5804 - 2.4681 0.99 1739 194 0.1716 0.2142 REMARK 3 9 2.4681 - 2.3731 0.99 1737 193 0.1897 0.2282 REMARK 3 10 2.3731 - 2.2912 1.00 1748 195 0.1752 0.2008 REMARK 3 11 2.2912 - 2.2196 0.99 1722 191 0.1880 0.2296 REMARK 3 12 2.2196 - 2.1561 1.00 1755 196 0.1867 0.2352 REMARK 3 13 2.1561 - 2.0994 0.99 1691 187 0.1853 0.1902 REMARK 3 14 2.0994 - 2.0481 0.94 1652 184 0.2025 0.2318 REMARK 3 15 2.0481 - 2.0016 0.86 1487 164 0.2261 0.2531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1924 REMARK 3 ANGLE : 1.191 2752 REMARK 3 CHIRALITY : 0.051 287 REMARK 3 PLANARITY : 0.006 222 REMARK 3 DIHEDRAL : 25.577 754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 481 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4578 373.8158 25.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.7734 T22: 0.3566 REMARK 3 T33: 0.7318 T12: 0.0870 REMARK 3 T13: 0.0148 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 4.2447 L22: 5.2419 REMARK 3 L33: 4.5381 L12: -3.3928 REMARK 3 L13: 4.3396 L23: -3.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.4570 S12: 0.1847 S13: -0.9605 REMARK 3 S21: 0.3173 S22: 0.0394 S23: 0.0310 REMARK 3 S31: 1.0958 S32: 0.2103 S33: -0.5771 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6106 382.1317 24.1859 REMARK 3 T TENSOR REMARK 3 T11: 0.5405 T22: 0.3557 REMARK 3 T33: 0.8881 T12: -0.0628 REMARK 3 T13: 0.0210 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 2.9569 L22: 5.9851 REMARK 3 L33: 5.3205 L12: -3.3001 REMARK 3 L13: 2.0428 L23: 0.4780 REMARK 3 S TENSOR REMARK 3 S11: 0.1917 S12: -0.0836 S13: -1.2373 REMARK 3 S21: -0.1939 S22: 0.1074 S23: 2.0508 REMARK 3 S31: 1.0634 S32: -0.3918 S33: -0.3344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2937 397.1930 19.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.3778 REMARK 3 T33: 0.6325 T12: -0.0083 REMARK 3 T13: -0.0776 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 4.6589 L22: 7.1852 REMARK 3 L33: 3.9128 L12: -4.7569 REMARK 3 L13: 0.9284 L23: -2.9990 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0996 S13: -0.6090 REMARK 3 S21: -0.5248 S22: 0.2535 S23: 1.5431 REMARK 3 S31: 0.2719 S32: -0.3505 S33: -0.2073 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 546 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5216 407.7575 21.4127 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.3154 REMARK 3 T33: 0.2621 T12: 0.0606 REMARK 3 T13: -0.0453 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.0235 L22: 7.2840 REMARK 3 L33: 4.5013 L12: 2.5389 REMARK 3 L13: -3.4289 L23: 1.1473 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.1281 S13: -0.0295 REMARK 3 S21: 0.2438 S22: 0.0577 S23: -0.4424 REMARK 3 S31: 0.1928 S32: 0.4392 S33: -0.0715 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 601) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8997 404.7916 31.9443 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.3840 REMARK 3 T33: 0.3845 T12: 0.0312 REMARK 3 T13: 0.0903 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.6064 L22: 5.2409 REMARK 3 L33: 6.8331 L12: 1.3747 REMARK 3 L13: 2.3406 L23: -2.1428 REMARK 3 S TENSOR REMARK 3 S11: 0.2515 S12: -0.3483 S13: -0.3792 REMARK 3 S21: 0.9607 S22: 0.0355 S23: 0.4549 REMARK 3 S31: 0.4757 S32: -0.3241 S33: -0.2525 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2967 399.2450 7.7001 REMARK 3 T TENSOR REMARK 3 T11: 1.3937 T22: 0.8369 REMARK 3 T33: 0.3720 T12: -0.0940 REMARK 3 T13: 0.0680 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 7.9115 L22: 3.3323 REMARK 3 L33: 5.0725 L12: -0.4567 REMARK 3 L13: -5.4702 L23: -1.7407 REMARK 3 S TENSOR REMARK 3 S11: 1.2270 S12: 0.5920 S13: 0.8707 REMARK 3 S21: -0.9629 S22: -0.1130 S23: 0.0283 REMARK 3 S31: -2.3222 S32: 0.4419 S33: -0.9346 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8038 389.4640 27.6224 REMARK 3 T TENSOR REMARK 3 T11: 0.4207 T22: 0.2776 REMARK 3 T33: 0.3121 T12: 0.0693 REMARK 3 T13: 0.0531 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 6.9723 L22: 8.0165 REMARK 3 L33: 4.1102 L12: -1.1423 REMARK 3 L13: 1.2990 L23: 1.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.2604 S13: -0.3913 REMARK 3 S21: 0.4423 S22: 0.3131 S23: 0.0308 REMARK 3 S31: 0.6751 S32: 0.3670 S33: -0.2949 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 13 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4512 389.1545 43.4279 REMARK 3 T TENSOR REMARK 3 T11: 1.4186 T22: 1.4345 REMARK 3 T33: 0.7905 T12: -0.1850 REMARK 3 T13: 0.9399 T23: 0.1432 REMARK 3 L TENSOR REMARK 3 L11: 5.5289 L22: 1.1560 REMARK 3 L33: 2.6017 L12: 1.1021 REMARK 3 L13: -0.2730 L23: -1.6171 REMARK 3 S TENSOR REMARK 3 S11: -0.5107 S12: -1.6522 S13: -0.9173 REMARK 3 S21: 1.1446 S22: -0.2501 S23: 1.1001 REMARK 3 S31: 1.3201 S32: -1.7080 S33: -0.5531 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 19 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0667 387.2053 49.3978 REMARK 3 T TENSOR REMARK 3 T11: 2.1075 T22: 1.8405 REMARK 3 T33: 0.6649 T12: -0.2545 REMARK 3 T13: 0.6437 T23: 0.1326 REMARK 3 L TENSOR REMARK 3 L11: 5.6954 L22: 5.0939 REMARK 3 L33: 7.9630 L12: -4.4161 REMARK 3 L13: -3.0304 L23: 5.6056 REMARK 3 S TENSOR REMARK 3 S11: -0.3224 S12: -2.5118 S13: 0.1142 REMARK 3 S21: 1.7870 S22: 0.6037 S23: 0.3754 REMARK 3 S31: 0.1215 S32: 0.8877 S33: -0.0351 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 24 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.8042 392.3679 24.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.1996 REMARK 3 T33: 0.2637 T12: 0.0986 REMARK 3 T13: 0.0830 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 5.9642 L22: 5.2610 REMARK 3 L33: 3.9505 L12: 0.6098 REMARK 3 L13: 2.0487 L23: -0.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.2070 S12: -0.0341 S13: -0.3506 REMARK 3 S21: 0.1565 S22: 0.1170 S23: 0.0005 REMARK 3 S31: 0.7054 S32: 0.1403 S33: 0.1471 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 34 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2140 392.2975 4.3232 REMARK 3 T TENSOR REMARK 3 T11: 1.6105 T22: 1.0557 REMARK 3 T33: 0.3997 T12: -0.0847 REMARK 3 T13: -0.0924 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.8487 L22: 6.1751 REMARK 3 L33: 6.4333 L12: 2.6032 REMARK 3 L13: -3.9210 L23: -5.7887 REMARK 3 S TENSOR REMARK 3 S11: 0.3385 S12: 1.4848 S13: 0.0614 REMARK 3 S21: -1.7971 S22: 0.8831 S23: 0.8244 REMARK 3 S31: 0.8752 S32: -0.8750 S33: -1.0378 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.002 REMARK 200 RESOLUTION RANGE LOW (A) : 43.042 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.07410 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 4F6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DISODIUM TARTRATE, 20 % PEG REMARK 280 3350, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.13800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.80250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.13800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.80250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.13800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.80250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.13800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.80250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 704 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 ALA A 472 REMARK 465 ASN A 473 REMARK 465 LYS A 474 REMARK 465 ARG A 475 REMARK 465 MET A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 HIS A 480 REMARK 465 ASP A 602 REMARK 465 ARG A 603 REMARK 465 SER A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 120 O HOH D 121 2.13 REMARK 500 O HOH E 120 O HOH E 122 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG E 30 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG E 30 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 578 -73.20 -70.86 REMARK 500 ASP A 580 64.14 39.57 REMARK 500 SER A 581 159.21 179.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 496 SG REMARK 620 2 CYS A 499 SG 115.5 REMARK 620 3 HIS A 512 NE2 115.4 102.9 REMARK 620 4 HIS A 516 NE2 108.0 111.6 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 524 SG REMARK 620 2 CYS A 527 SG 113.7 REMARK 620 3 HIS A 540 NE2 106.9 112.8 REMARK 620 4 HIS A 544 NE2 101.1 116.6 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 552 SG REMARK 620 2 CYS A 555 SG 115.6 REMARK 620 3 HIS A 568 NE2 109.1 107.3 REMARK 620 4 HIS A 573 NE2 103.4 116.3 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VMZ RELATED DB: PDB REMARK 900 RELATED ID: 5VMX RELATED DB: PDB REMARK 900 RELATED ID: 5VMW RELATED DB: PDB REMARK 900 RELATED ID: 5VMV RELATED DB: PDB REMARK 900 RELATED ID: 5VMU RELATED DB: PDB DBREF 5VMY A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 DBREF 5VMY D 1 18 PDB 5VMY 5VMY 1 18 DBREF 5VMY E 19 36 PDB 5VMY 5VMY 19 36 SEQRES 1 A 134 MET ALA ASN LYS ARG MET LYS VAL LYS HIS ASP ASP HIS SEQRES 2 A 134 TYR GLU LEU ILE VAL ASP GLY ARG VAL TYR TYR ILE CYS SEQRES 3 A 134 ILE VAL CYS LYS ARG SER TYR VAL CYS LEU THR SER LEU SEQRES 4 A 134 ARG ARG HIS PHE ASN ILE HIS SER TRP GLU LYS LYS TYR SEQRES 5 A 134 PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO LEU ALA GLU SEQRES 6 A 134 TYR ARG THR LYS HIS GLU ILE HIS HIS THR GLY GLU ARG SEQRES 7 A 134 ARG TYR GLN CYS LEU ALA CYS GLY LYS SER PHE ILE ASN SEQRES 8 A 134 TYR GLN PHE MET SER SER HIS ILE LYS SER VAL HIS SER SEQRES 9 A 134 GLN ASP PRO SER GLY ASP SER LYS LEU TYR ARG LEU HIS SEQRES 10 A 134 PRO CYS ARG SER LEU GLN ILE ARG GLN TYR ALA TYR LEU SEQRES 11 A 134 SER ASP ARG SER SEQRES 1 D 18 DT DG DC DT DT DC DC 5CM DG 5CM DG DA DA SEQRES 2 D 18 DT DA DA DC DG SEQRES 1 E 18 DC DG DT DT DA DT DT DC DG DC DG DG DG SEQRES 2 E 18 DA DA DG DC DA HET 5CM D 8 20 HET 5CM D 10 20 HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL A 704 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 5CM 2(C10 H16 N3 O7 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *95(H2 O) HELIX 1 AA1 CYS A 505 TRP A 518 1 14 HELIX 2 AA2 LEU A 533 GLY A 546 1 14 HELIX 3 AA3 ASN A 561 HIS A 573 1 13 HELIX 4 AA4 TYR A 597 SER A 601 5 5 SHEET 1 AA1 3 HIS A 483 VAL A 488 0 SHEET 2 AA1 3 ARG A 491 CYS A 496 -1 O TYR A 493 N LEU A 486 SHEET 3 AA1 3 SER A 502 TYR A 503 -1 O TYR A 503 N TYR A 494 SHEET 1 AA2 2 TYR A 522 PRO A 523 0 SHEET 2 AA2 2 VAL A 530 PHE A 531 -1 O PHE A 531 N TYR A 522 SHEET 1 AA3 3 SER A 558 PHE A 559 0 SHEET 2 AA3 3 TYR A 550 CYS A 552 -1 N TYR A 550 O PHE A 559 SHEET 3 AA3 3 TYR A 584 LEU A 586 -1 O ARG A 585 N GLN A 551 LINK O3' DC D 7 P 5CM D 8 1555 1555 1.61 LINK O3' 5CM D 8 P DG D 9 1555 1555 1.60 LINK O3' DG D 9 P 5CM D 10 1555 1555 1.61 LINK O3' 5CM D 10 P DG D 11 1555 1555 1.60 LINK SG CYS A 496 ZN ZN A 701 1555 1555 2.33 LINK SG CYS A 499 ZN ZN A 701 1555 1555 2.22 LINK NE2 HIS A 512 ZN ZN A 701 1555 1555 2.10 LINK NE2 HIS A 516 ZN ZN A 701 1555 1555 1.97 LINK SG CYS A 524 ZN ZN A 702 1555 1555 2.14 LINK SG CYS A 527 ZN ZN A 702 1555 1555 2.31 LINK NE2 HIS A 540 ZN ZN A 702 1555 1555 2.04 LINK NE2 HIS A 544 ZN ZN A 702 1555 1555 2.09 LINK SG CYS A 552 ZN ZN A 703 1555 1555 2.26 LINK SG CYS A 555 ZN ZN A 703 1555 1555 2.27 LINK NE2 HIS A 568 ZN ZN A 703 1555 1555 2.02 LINK NE2 HIS A 573 ZN ZN A 703 1555 1555 2.10 SITE 1 AC1 4 CYS A 496 CYS A 499 HIS A 512 HIS A 516 SITE 1 AC2 4 CYS A 524 CYS A 527 HIS A 540 HIS A 544 SITE 1 AC3 4 CYS A 552 CYS A 555 HIS A 568 HIS A 573 SITE 1 AC4 1 ARG A 548 CRYST1 44.276 183.605 105.033 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009521 0.00000