HEADER TRANSCRIPTION/DNA 28-APR-17 5VMZ TITLE KAISO (ZBTB33) E535Q MUTANT ZINC FINGER DNA BINDING DOMAIN IN COMPLEX TITLE 2 WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO TITLE 3 BINDING SEQUENCE (KBS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM) COMPND 9 P*GP*AP*AP*TP*AP*AP*CP*G)-3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*(5CM)P*GP*(5CM) COMPND 14 P*GP*GP*GP*AP*AP*GP*CP*A)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB33, KAISO, ZNF348; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) [DNAY]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA METHYLATION, ZINC FINGER, TRANSCRIPTIONAL REGULATOR, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.NIKOLOVA,R.L.STANFIELD,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT REVDAT 4 04-OCT-23 5VMZ 1 REMARK REVDAT 3 23-MAR-22 5VMZ 1 SOURCE REVDAT 2 25-APR-18 5VMZ 1 JRNL REVDAT 1 04-APR-18 5VMZ 0 JRNL AUTH E.N.NIKOLOVA,R.L.STANFIELD,H.J.DYSON,P.E.WRIGHT JRNL TITL CH···O HYDROGEN BONDS MEDIATE HIGHLY SPECIFIC JRNL TITL 2 RECOGNITION OF METHYLATED CPG SITES BY THE ZINC FINGER JRNL TITL 3 PROTEIN KAISO. JRNL REF BIOCHEMISTRY V. 57 2109 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29546986 JRNL DOI 10.1021/ACS.BIOCHEM.8B00065 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 18646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2482 - 5.4493 0.99 1419 156 0.1572 0.1753 REMARK 3 2 5.4493 - 4.3264 1.00 1346 150 0.1370 0.1582 REMARK 3 3 4.3264 - 3.7798 1.00 1312 146 0.1381 0.1645 REMARK 3 4 3.7798 - 3.4344 1.00 1321 146 0.1608 0.1919 REMARK 3 5 3.4344 - 3.1883 1.00 1314 147 0.1784 0.2194 REMARK 3 6 3.1883 - 3.0003 1.00 1305 145 0.1867 0.2216 REMARK 3 7 3.0003 - 2.8501 1.00 1302 145 0.1973 0.2361 REMARK 3 8 2.8501 - 2.7261 1.00 1291 144 0.1985 0.2254 REMARK 3 9 2.7261 - 2.6211 0.99 1271 140 0.1892 0.2408 REMARK 3 10 2.6211 - 2.5307 1.00 1307 146 0.1868 0.2451 REMARK 3 11 2.5307 - 2.4516 0.98 1261 139 0.1964 0.2106 REMARK 3 12 2.4516 - 2.3815 0.97 1255 140 0.2186 0.2865 REMARK 3 13 2.3815 - 2.3188 0.85 1078 120 0.2192 0.2730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1967 REMARK 3 ANGLE : 1.161 2790 REMARK 3 CHIRALITY : 0.050 290 REMARK 3 PLANARITY : 0.006 227 REMARK 3 DIHEDRAL : 25.761 744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 481 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5467 -4.9854 27.3697 REMARK 3 T TENSOR REMARK 3 T11: 0.8175 T22: 0.2819 REMARK 3 T33: 0.7333 T12: 0.0500 REMARK 3 T13: 0.0015 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 8.0883 L22: 7.8145 REMARK 3 L33: 8.2163 L12: -7.8556 REMARK 3 L13: -3.8366 L23: 4.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: -0.0598 S13: 0.6800 REMARK 3 S21: 0.1675 S22: 0.2003 S23: 0.1086 REMARK 3 S31: -0.3119 S32: -0.1060 S33: -0.0440 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1019 -11.8581 23.2658 REMARK 3 T TENSOR REMARK 3 T11: 0.4940 T22: 0.2573 REMARK 3 T33: 0.6535 T12: -0.0328 REMARK 3 T13: -0.0490 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 7.7113 L22: 7.0937 REMARK 3 L33: 7.0978 L12: -1.1894 REMARK 3 L13: -3.5038 L23: -1.6577 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.1527 S13: 0.9717 REMARK 3 S21: 0.0398 S22: 0.1066 S23: -0.9377 REMARK 3 S31: -0.7847 S32: 0.1583 S33: -0.2036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 518 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8948 -30.5648 21.0571 REMARK 3 T TENSOR REMARK 3 T11: 0.2795 T22: 0.3335 REMARK 3 T33: 0.4476 T12: 0.0154 REMARK 3 T13: -0.0075 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 8.4183 L22: 4.0894 REMARK 3 L33: 2.0672 L12: 3.2154 REMARK 3 L13: -2.0080 L23: -1.2837 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.1891 S13: 0.1421 REMARK 3 S21: -0.3494 S22: -0.0600 S23: -1.1284 REMARK 3 S31: -0.2643 S32: 0.3183 S33: 0.1250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 553 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1150 -40.2864 21.5123 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.2875 REMARK 3 T33: 0.3194 T12: 0.0667 REMARK 3 T13: 0.0463 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 7.1981 L22: 4.8692 REMARK 3 L33: 6.7194 L12: 4.2734 REMARK 3 L13: 3.2730 L23: -0.7721 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.4174 S13: 0.0229 REMARK 3 S21: 0.2809 S22: -0.1447 S23: 0.3610 REMARK 3 S31: -0.0897 S32: -0.5448 S33: 0.0150 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 602 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1481 -37.7525 32.5109 REMARK 3 T TENSOR REMARK 3 T11: 0.4074 T22: 0.3714 REMARK 3 T33: 0.3178 T12: 0.0685 REMARK 3 T13: -0.0743 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.5771 L22: 3.3127 REMARK 3 L33: 2.1989 L12: 2.1665 REMARK 3 L13: -1.8678 L23: -2.4139 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.5276 S13: 0.0946 REMARK 3 S21: 0.7363 S22: 0.3132 S23: -0.2703 REMARK 3 S31: -0.4070 S32: 0.2188 S33: -0.1716 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3343 -28.3251 11.9234 REMARK 3 T TENSOR REMARK 3 T11: 1.0037 T22: 0.4349 REMARK 3 T33: 0.3010 T12: -0.0799 REMARK 3 T13: -0.0870 T23: 0.0898 REMARK 3 L TENSOR REMARK 3 L11: 5.5591 L22: 2.2428 REMARK 3 L33: 8.5357 L12: -1.3860 REMARK 3 L13: 1.7481 L23: 3.3908 REMARK 3 S TENSOR REMARK 3 S11: 0.4489 S12: 0.6644 S13: -0.0872 REMARK 3 S21: -1.5288 S22: 0.3041 S23: -0.4410 REMARK 3 S31: 0.9682 S32: -0.3445 S33: -0.4717 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4112 -21.9390 39.1710 REMARK 3 T TENSOR REMARK 3 T11: 1.2104 T22: 0.8283 REMARK 3 T33: 0.6246 T12: -0.0256 REMARK 3 T13: -0.4629 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 3.8036 L22: 0.4536 REMARK 3 L33: 2.9514 L12: -0.0291 REMARK 3 L13: -0.0565 L23: -1.0404 REMARK 3 S TENSOR REMARK 3 S11: -0.2739 S12: -1.1637 S13: 0.6870 REMARK 3 S21: 2.3388 S22: -0.0264 S23: -0.8676 REMARK 3 S31: -1.4775 S32: 0.8273 S33: 0.1601 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 19 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1128 -19.0541 45.1524 REMARK 3 T TENSOR REMARK 3 T11: 1.9927 T22: 1.3676 REMARK 3 T33: 0.7450 T12: -0.0337 REMARK 3 T13: -0.7614 T23: -0.2736 REMARK 3 L TENSOR REMARK 3 L11: 5.6118 L22: 4.7679 REMARK 3 L33: 3.3971 L12: -3.0161 REMARK 3 L13: 0.6743 L23: -3.5673 REMARK 3 S TENSOR REMARK 3 S11: -0.4131 S12: -2.5686 S13: 0.1618 REMARK 3 S21: 2.8553 S22: 0.3731 S23: -0.3131 REMARK 3 S31: -0.5062 S32: -0.3064 S33: 0.1860 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7444 -26.4043 17.6368 REMARK 3 T TENSOR REMARK 3 T11: 0.4505 T22: 0.2758 REMARK 3 T33: 0.2776 T12: -0.0077 REMARK 3 T13: -0.0282 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 6.5780 L22: 5.4479 REMARK 3 L33: 8.8794 L12: -1.2905 REMARK 3 L13: -0.3488 L23: -0.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.8233 S13: 0.1025 REMARK 3 S21: -0.7997 S22: 0.1716 S23: 0.0075 REMARK 3 S31: -0.7637 S32: -0.2673 S33: -0.1000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.319 REMARK 200 RESOLUTION RANGE LOW (A) : 45.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06340 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.30900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 4F6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DISODIUM TARTRATE, 20 % PEG REMARK 280 3350, PH 7.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.20450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.74350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.20450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.74350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.20450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.74350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.20450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.74350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 704 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 471 REMARK 465 ALA A 472 REMARK 465 ASN A 473 REMARK 465 LYS A 474 REMARK 465 ARG A 475 REMARK 465 MET A 476 REMARK 465 LYS A 477 REMARK 465 VAL A 478 REMARK 465 LYS A 479 REMARK 465 HIS A 480 REMARK 465 ARG A 603 REMARK 465 SER A 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 30 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 482 -7.21 -140.20 REMARK 500 CYS A 527 -159.44 -143.84 REMARK 500 SER A 581 -59.30 -138.97 REMARK 500 LYS A 582 70.41 64.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 496 SG REMARK 620 2 CYS A 499 SG 115.3 REMARK 620 3 HIS A 512 NE2 105.4 105.6 REMARK 620 4 HIS A 516 NE2 110.6 112.2 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 702 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 524 SG REMARK 620 2 CYS A 527 SG 117.2 REMARK 620 3 HIS A 540 NE2 105.9 112.3 REMARK 620 4 HIS A 544 NE2 103.0 114.4 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 552 SG REMARK 620 2 CYS A 555 SG 116.7 REMARK 620 3 HIS A 568 NE2 112.7 108.3 REMARK 620 4 HIS A 573 NE2 103.7 110.3 104.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VMU RELATED DB: PDB REMARK 900 RELATED ID: 5VMV RELATED DB: PDB REMARK 900 RELATED ID: 5VMW RELATED DB: PDB REMARK 900 RELATED ID: 5VMX RELATED DB: PDB REMARK 900 RELATED ID: 5VMY RELATED DB: PDB DBREF 5VMZ A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 DBREF 5VMZ D 1 18 PDB 5VMZ 5VMZ 1 18 DBREF 5VMZ E 19 36 PDB 5VMZ 5VMZ 19 36 SEQADV 5VMZ GLN A 535 UNP Q86T24 GLU 535 ENGINEERED MUTATION SEQRES 1 A 134 MET ALA ASN LYS ARG MET LYS VAL LYS HIS ASP ASP HIS SEQRES 2 A 134 TYR GLU LEU ILE VAL ASP GLY ARG VAL TYR TYR ILE CYS SEQRES 3 A 134 ILE VAL CYS LYS ARG SER TYR VAL CYS LEU THR SER LEU SEQRES 4 A 134 ARG ARG HIS PHE ASN ILE HIS SER TRP GLU LYS LYS TYR SEQRES 5 A 134 PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO LEU ALA GLN SEQRES 6 A 134 TYR ARG THR LYS HIS GLU ILE HIS HIS THR GLY GLU ARG SEQRES 7 A 134 ARG TYR GLN CYS LEU ALA CYS GLY LYS SER PHE ILE ASN SEQRES 8 A 134 TYR GLN PHE MET SER SER HIS ILE LYS SER VAL HIS SER SEQRES 9 A 134 GLN ASP PRO SER GLY ASP SER LYS LEU TYR ARG LEU HIS SEQRES 10 A 134 PRO CYS ARG SER LEU GLN ILE ARG GLN TYR ALA TYR LEU SEQRES 11 A 134 SER ASP ARG SER SEQRES 1 D 18 DT DG DC DT DT DC DC 5CM DG 5CM DG DA DA SEQRES 2 D 18 DT DA DA DC DG SEQRES 1 E 18 DC DG DT DT DA DT DT 5CM DG 5CM DG DG DG SEQRES 2 E 18 DA DA DG DC DA HET 5CM D 8 20 HET 5CM D 10 20 HET 5CM E 26 20 HET 5CM E 28 20 HET ZN A 701 1 HET ZN A 702 1 HET ZN A 703 1 HET CL A 704 1 HET TLA A 705 10 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 5CM 4(C10 H16 N3 O7 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 TLA C4 H6 O6 FORMUL 9 HOH *84(H2 O) HELIX 1 AA1 CYS A 505 TRP A 518 1 14 HELIX 2 AA2 LEU A 533 GLY A 546 1 14 HELIX 3 AA3 ASN A 561 SER A 574 1 14 HELIX 4 AA4 TYR A 597 ASP A 602 5 6 SHEET 1 AA1 3 HIS A 483 VAL A 488 0 SHEET 2 AA1 3 ARG A 491 CYS A 496 -1 O ILE A 495 N TYR A 484 SHEET 3 AA1 3 SER A 502 TYR A 503 -1 O TYR A 503 N TYR A 494 SHEET 1 AA2 2 TYR A 522 PRO A 523 0 SHEET 2 AA2 2 VAL A 530 PHE A 531 -1 O PHE A 531 N TYR A 522 SHEET 1 AA3 3 SER A 558 PHE A 559 0 SHEET 2 AA3 3 TYR A 550 CYS A 552 -1 N TYR A 550 O PHE A 559 SHEET 3 AA3 3 TYR A 584 LEU A 586 -1 O ARG A 585 N GLN A 551 LINK O3' DC D 7 P 5CM D 8 1555 1555 1.60 LINK O3' 5CM D 8 P DG D 9 1555 1555 1.61 LINK O3' DG D 9 P 5CM D 10 1555 1555 1.61 LINK O3' 5CM D 10 P DG D 11 1555 1555 1.60 LINK O3' DT E 25 P 5CM E 26 1555 1555 1.60 LINK O3' 5CM E 26 P DG E 27 1555 1555 1.61 LINK O3' DG E 27 P 5CM E 28 1555 1555 1.61 LINK O3' 5CM E 28 P DG E 29 1555 1555 1.61 LINK SG CYS A 496 ZN ZN A 701 1555 1555 2.27 LINK SG CYS A 499 ZN ZN A 701 1555 1555 2.21 LINK NE2 HIS A 512 ZN ZN A 701 1555 1555 2.05 LINK NE2 HIS A 516 ZN ZN A 701 1555 1555 2.01 LINK SG CYS A 524 ZN ZN A 702 1555 1555 2.20 LINK SG CYS A 527 ZN ZN A 702 1555 1555 2.29 LINK NE2 HIS A 540 ZN ZN A 702 1555 1555 1.99 LINK NE2 HIS A 544 ZN ZN A 702 1555 1555 2.05 LINK SG CYS A 552 ZN ZN A 703 1555 1555 2.21 LINK SG CYS A 555 ZN ZN A 703 1555 1555 2.34 LINK NE2 HIS A 568 ZN ZN A 703 1555 1555 2.04 LINK NE2 HIS A 573 ZN ZN A 703 1555 1555 2.13 SITE 1 AC1 4 CYS A 496 CYS A 499 HIS A 512 HIS A 516 SITE 1 AC2 4 CYS A 524 CYS A 527 HIS A 540 HIS A 544 SITE 1 AC3 4 CYS A 552 CYS A 555 HIS A 568 HIS A 573 SITE 1 AC4 3 ARG A 548 ARG A 590 HOH A 827 SITE 1 AC5 15 LYS A 539 TYR A 550 ASN A 561 TYR A 562 SITE 2 AC5 15 GLN A 563 HOH A 801 HOH A 815 HOH A 816 SITE 3 AC5 15 HOH A 821 HOH A 828 HOH A 829 DC D 6 SITE 4 AC5 15 DC D 7 DG E 30 HOH E 106 CRYST1 44.409 183.487 104.003 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009615 0.00000