HEADER OXIDOREDUCTASE 28-APR-17 5VN6 TITLE CRYSTAL STRUCTURE OF TAURINE DIOXYGENASE FROM BURKHOLDERIA AMBIFARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAURINE DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA (STRAIN MC40-6); SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: BAMMC406_1605; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUAMA.00024.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5VN6 1 LINK REVDAT 2 11-OCT-17 5VN6 1 REMARK REVDAT 1 07-JUN-17 5VN6 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF TAURINE DIOXYGENASE FROM BURKHOLDERIA JRNL TITL 2 AMBIFARIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2747) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4730 - 5.0583 0.99 2455 132 0.1618 0.1790 REMARK 3 2 5.0583 - 4.0161 1.00 2398 162 0.1291 0.1490 REMARK 3 3 4.0161 - 3.5088 1.00 2402 149 0.1464 0.1936 REMARK 3 4 3.5088 - 3.1881 1.00 2392 144 0.1694 0.2129 REMARK 3 5 3.1881 - 2.9597 1.00 2382 152 0.1793 0.2223 REMARK 3 6 2.9597 - 2.7852 1.00 2386 140 0.1796 0.2428 REMARK 3 7 2.7852 - 2.6458 1.00 2380 153 0.1886 0.2526 REMARK 3 8 2.6458 - 2.5306 1.00 2381 147 0.1904 0.2398 REMARK 3 9 2.5306 - 2.4332 1.00 2368 135 0.1780 0.2364 REMARK 3 10 2.4332 - 2.3492 1.00 2390 139 0.1731 0.2593 REMARK 3 11 2.3492 - 2.2758 1.00 2422 130 0.1881 0.2424 REMARK 3 12 2.2758 - 2.2107 1.00 2369 146 0.1837 0.2254 REMARK 3 13 2.2107 - 2.1526 1.00 2401 126 0.2115 0.2706 REMARK 3 14 2.1526 - 2.1000 1.00 2373 123 0.2212 0.2768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4310 REMARK 3 ANGLE : 0.888 5885 REMARK 3 CHIRALITY : 0.056 638 REMARK 3 PLANARITY : 0.007 781 REMARK 3 DIHEDRAL : 14.411 2537 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7568 -2.6191 6.6203 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.4609 REMARK 3 T33: 0.3184 T12: -0.1144 REMARK 3 T13: -0.0574 T23: -0.1264 REMARK 3 L TENSOR REMARK 3 L11: 3.6831 L22: 1.5176 REMARK 3 L33: 3.4839 L12: -0.4184 REMARK 3 L13: 1.4979 L23: -0.9399 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: 0.6707 S13: -0.1684 REMARK 3 S21: -0.4145 S22: -0.1157 S23: 0.3567 REMARK 3 S31: 0.1304 S32: -0.1896 S33: 0.1695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0705 1.6587 27.4321 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2756 REMARK 3 T33: 0.3612 T12: -0.0698 REMARK 3 T13: -0.0474 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.3848 L22: 0.3961 REMARK 3 L33: 3.7102 L12: -0.0720 REMARK 3 L13: 0.0502 L23: 0.4453 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: 0.1984 S13: 0.0480 REMARK 3 S21: -0.1498 S22: -0.0287 S23: 0.1416 REMARK 3 S31: -0.1494 S32: -0.5235 S33: 0.2023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0404 10.1846 14.8067 REMARK 3 T TENSOR REMARK 3 T11: 0.5600 T22: 1.1020 REMARK 3 T33: 0.4926 T12: -0.4080 REMARK 3 T13: 0.0310 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 1.3428 L22: 0.2470 REMARK 3 L33: 1.4442 L12: 0.2977 REMARK 3 L13: -0.7624 L23: 0.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.1958 S12: 0.4721 S13: -0.0531 REMARK 3 S21: -0.3224 S22: 0.1811 S23: -0.4214 REMARK 3 S31: -0.2643 S32: 1.2153 S33: 0.1615 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9829 8.0211 33.2681 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.4680 REMARK 3 T33: 0.3970 T12: -0.1302 REMARK 3 T13: -0.0103 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 1.4565 L22: 0.5660 REMARK 3 L33: 2.8308 L12: 0.4288 REMARK 3 L13: 0.1245 L23: 0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.2898 S12: 0.2231 S13: -0.0504 REMARK 3 S21: -0.1163 S22: 0.1019 S23: -0.1479 REMARK 3 S31: -0.2375 S32: 0.9205 S33: 0.1361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 OR (RESID 2 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 3 OR (RESID 4 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 5 THROUGH 37 OR REMARK 3 (RESID 38 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 39 REMARK 3 THROUGH 67 OR RESID 75 THROUGH 80 OR REMARK 3 (RESID 81 THROUGH 84 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 92 THROUGH 134 OR RESID 136 THROUGH REMARK 3 190 OR (RESID 191 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 192 THROUGH 269 OR (RESID 270 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 271 THROUGH 272 OR REMARK 3 (RESID 273 THROUGH 274 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 275 THROUGH 282)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 84 OR REMARK 3 (RESID 92 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 93 REMARK 3 THROUGH 116 OR (RESID 117 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 118 THROUGH 134 OR RESID 136 REMARK 3 THROUGH 282)) REMARK 3 ATOM PAIRS NUMBER : 2423 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.65 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.465 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.210 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.25 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, COMO REMARK 200 STARTING MODEL: PDB ENTRY 3PVJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG+ SCREEN, D6: 18% REMARK 280 PEG 8000, 100MM TRIS BASE/HCL PH 7.65, 200MM MGCL2: REMARK 280 BUAMA.00024.A.B1.PS02503 AT 20.9MG/ML : CRYO: 20% EG: TRAY REMARK 280 267365D6, PUCK PRV7-6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.59000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 72 REMARK 465 ASP A 73 REMARK 465 PRO A 74 REMARK 465 SER A 85 REMARK 465 PRO A 86 REMARK 465 ASP A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 89 REMARK 465 ASN A 90 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 PRO B 68 REMARK 465 VAL B 69 REMARK 465 ALA B 70 REMARK 465 GLY B 71 REMARK 465 SER B 72 REMARK 465 ASP B 73 REMARK 465 PRO B 74 REMARK 465 SER B 85 REMARK 465 PRO B 86 REMARK 465 ASP B 87 REMARK 465 GLN B 88 REMARK 465 PRO B 89 REMARK 465 ASN B 90 REMARK 465 ASP B 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 HIS A 67 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 69 CG1 CG2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 TYR A 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ASP A 117 CG OD1 OD2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 VAL A 268 CG1 CG2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 HIS B 67 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 82 CG1 CG2 CD1 REMARK 470 TYR B 83 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 VAL B 268 CG1 CG2 REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 -40.31 71.56 REMARK 500 VAL A 69 -149.42 57.47 REMARK 500 SER A 157 -82.18 -108.17 REMARK 500 TYR A 194 56.71 -114.41 REMARK 500 MET A 262 59.82 -110.19 REMARK 500 ASP A 279 -169.67 -109.16 REMARK 500 ARG B 40 -40.67 72.45 REMARK 500 SER B 157 -83.59 -110.30 REMARK 500 TYR B 194 58.60 -114.78 REMARK 500 MET B 262 58.97 -112.05 REMARK 500 ASP B 279 -167.31 -108.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD1 REMARK 620 2 HOH A 521 O 99.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUAMA.00024.A RELATED DB: TARGETTRACK DBREF 5VN6 A 1 282 UNP B1YQF4 B1YQF4_BURA4 1 282 DBREF 5VN6 B 1 282 UNP B1YQF4 B1YQF4_BURA4 1 282 SEQADV 5VN6 MET A -7 UNP B1YQF4 INITIATING METHIONINE SEQADV 5VN6 ALA A -6 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A -5 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A -4 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A -3 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A -2 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A -1 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS A 0 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 MET B -7 UNP B1YQF4 INITIATING METHIONINE SEQADV 5VN6 ALA B -6 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B -5 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B -4 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B -3 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B -2 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B -1 UNP B1YQF4 EXPRESSION TAG SEQADV 5VN6 HIS B 0 UNP B1YQF4 EXPRESSION TAG SEQRES 1 A 290 MET ALA HIS HIS HIS HIS HIS HIS MET ARG VAL GLU PRO SEQRES 2 A 290 LEU THR CYS ALA ILE GLY ALA GLU LEU LEU GLY VAL ASN SEQRES 3 A 290 LEU ALA ASP ALA VAL HIS ASP ASP GLY LEU PHE ALA GLU SEQRES 4 A 290 ILE ARG THR GLN LEU LEU ARG HIS ARG VAL LEU PHE LEU SEQRES 5 A 290 ARG ASP GLN ASP ILE THR ARG ALA GLU HIS VAL ALA PHE SEQRES 6 A 290 ALA ARG ARG PHE GLY GLU LEU GLU ASP HIS PRO VAL ALA SEQRES 7 A 290 GLY SER ASP PRO GLU HIS PRO GLY LEU VAL ARG ILE TYR SEQRES 8 A 290 LYS SER PRO ASP GLN PRO ASN ASP ARG TYR GLU ASN ALA SEQRES 9 A 290 TRP HIS SER ASP ALA SER TRP ARG VAL ALA PRO PRO PHE SEQRES 10 A 290 GLY CYS VAL LEU ARG CYS ILE ASP GLY PRO PRO VAL GLY SEQRES 11 A 290 GLY ASP THR MET TRP ALA ASN MET VAL LEU ALA TYR GLU SEQRES 12 A 290 ASN LEU PRO ASP HIS VAL LYS GLN GLN ILE ALA ASP LEU SEQRES 13 A 290 ARG ALA ARG HIS SER ILE GLU ALA SER PHE GLY ALA ALA SEQRES 14 A 290 MET PRO ILE ASP LYS ARG LEU ALA LEU LYS ALA GLN TYR SEQRES 15 A 290 PRO ASP ALA GLU HIS PRO VAL VAL ARG THR HIS PRO GLU SEQRES 16 A 290 THR GLY GLU LYS VAL LEU TYR VAL ASN ALA PHE THR THR SEQRES 17 A 290 HIS PHE THR ASN PHE HIS THR PRO ALA ARG VAL ARG VAL SEQRES 18 A 290 GLY GLN ASP ALA ASN PRO GLY ALA GLY GLN LEU LEU HIS SEQRES 19 A 290 TYR LEU ILE GLY GLN ALA ALA ILE PRO GLU TYR GLN VAL SEQRES 20 A 290 ARG TRP ARG TRP LYS LYS ASN SER VAL ALA ILE TRP ASP SEQRES 21 A 290 ASN ARG ALA THR GLN HIS TYR ALA VAL MET ASP TYR PRO SEQRES 22 A 290 PRO CYS VAL ARG ARG MET GLU ARG ALA GLY ILE VAL GLY SEQRES 23 A 290 ASP VAL PRO PHE SEQRES 1 B 290 MET ALA HIS HIS HIS HIS HIS HIS MET ARG VAL GLU PRO SEQRES 2 B 290 LEU THR CYS ALA ILE GLY ALA GLU LEU LEU GLY VAL ASN SEQRES 3 B 290 LEU ALA ASP ALA VAL HIS ASP ASP GLY LEU PHE ALA GLU SEQRES 4 B 290 ILE ARG THR GLN LEU LEU ARG HIS ARG VAL LEU PHE LEU SEQRES 5 B 290 ARG ASP GLN ASP ILE THR ARG ALA GLU HIS VAL ALA PHE SEQRES 6 B 290 ALA ARG ARG PHE GLY GLU LEU GLU ASP HIS PRO VAL ALA SEQRES 7 B 290 GLY SER ASP PRO GLU HIS PRO GLY LEU VAL ARG ILE TYR SEQRES 8 B 290 LYS SER PRO ASP GLN PRO ASN ASP ARG TYR GLU ASN ALA SEQRES 9 B 290 TRP HIS SER ASP ALA SER TRP ARG VAL ALA PRO PRO PHE SEQRES 10 B 290 GLY CYS VAL LEU ARG CYS ILE ASP GLY PRO PRO VAL GLY SEQRES 11 B 290 GLY ASP THR MET TRP ALA ASN MET VAL LEU ALA TYR GLU SEQRES 12 B 290 ASN LEU PRO ASP HIS VAL LYS GLN GLN ILE ALA ASP LEU SEQRES 13 B 290 ARG ALA ARG HIS SER ILE GLU ALA SER PHE GLY ALA ALA SEQRES 14 B 290 MET PRO ILE ASP LYS ARG LEU ALA LEU LYS ALA GLN TYR SEQRES 15 B 290 PRO ASP ALA GLU HIS PRO VAL VAL ARG THR HIS PRO GLU SEQRES 16 B 290 THR GLY GLU LYS VAL LEU TYR VAL ASN ALA PHE THR THR SEQRES 17 B 290 HIS PHE THR ASN PHE HIS THR PRO ALA ARG VAL ARG VAL SEQRES 18 B 290 GLY GLN ASP ALA ASN PRO GLY ALA GLY GLN LEU LEU HIS SEQRES 19 B 290 TYR LEU ILE GLY GLN ALA ALA ILE PRO GLU TYR GLN VAL SEQRES 20 B 290 ARG TRP ARG TRP LYS LYS ASN SER VAL ALA ILE TRP ASP SEQRES 21 B 290 ASN ARG ALA THR GLN HIS TYR ALA VAL MET ASP TYR PRO SEQRES 22 B 290 PRO CYS VAL ARG ARG MET GLU ARG ALA GLY ILE VAL GLY SEQRES 23 B 290 ASP VAL PRO PHE HET MG A 300 1 HET MG B 300 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *287(H2 O) HELIX 1 AA1 ASN A 18 ASP A 25 1 8 HELIX 2 AA2 ASP A 25 ARG A 40 1 16 HELIX 3 AA3 THR A 50 ARG A 60 1 11 HELIX 4 AA4 MET A 130 ASN A 136 1 7 HELIX 5 AA5 PRO A 138 ALA A 146 1 9 HELIX 6 AA6 PRO A 163 TYR A 174 1 12 HELIX 7 AA7 VAL A 213 ASN A 218 1 6 HELIX 8 AA8 PRO A 219 GLY A 230 1 12 HELIX 9 AA9 GLN A 231 GLU A 236 5 6 HELIX 10 AB1 ASN B 18 HIS B 24 5 7 HELIX 11 AB2 ASP B 25 ARG B 40 1 16 HELIX 12 AB3 THR B 50 ARG B 60 1 11 HELIX 13 AB4 MET B 130 ASN B 136 1 7 HELIX 14 AB5 PRO B 138 ALA B 146 1 9 HELIX 15 AB6 PRO B 163 TYR B 174 1 12 HELIX 16 AB7 VAL B 213 ASN B 218 1 6 HELIX 17 AB8 PRO B 219 GLY B 230 1 12 HELIX 18 AB9 GLN B 231 GLU B 236 5 6 SHEET 1 AA1 7 ARG A 2 PRO A 5 0 SHEET 2 AA1 7 ALA A 12 LEU A 15 -1 O GLU A 13 N GLU A 4 SHEET 3 AA1 7 VAL A 41 LEU A 44 1 O PHE A 43 N LEU A 14 SHEET 4 AA1 7 VAL A 248 ASP A 252 -1 O ILE A 250 N LEU A 42 SHEET 5 AA1 7 GLY A 110 ASP A 117 -1 N LEU A 113 O ALA A 249 SHEET 6 AA1 7 ARG A 270 ILE A 276 -1 O GLU A 272 N ARG A 114 SHEET 7 AA1 7 LEU A 79 TYR A 83 -1 N ILE A 82 O MET A 271 SHEET 1 AA2 3 GLN A 238 TRP A 241 0 SHEET 2 AA2 3 THR A 125 ASN A 129 -1 N THR A 125 O TRP A 241 SHEET 3 AA2 3 THR A 256 ALA A 260 -1 O TYR A 259 N MET A 126 SHEET 1 AA3 3 ALA A 177 PRO A 180 0 SHEET 2 AA3 3 ARG A 149 HIS A 152 -1 N ALA A 150 O HIS A 179 SHEET 3 AA3 3 THR A 199 PHE A 202 -1 O THR A 200 N ARG A 151 SHEET 1 AA4 2 VAL A 182 THR A 184 0 SHEET 2 AA4 2 LYS A 191 LEU A 193 -1 O VAL A 192 N ARG A 183 SHEET 1 AA5 7 ARG B 2 PRO B 5 0 SHEET 2 AA5 7 ALA B 12 LEU B 15 -1 O GLU B 13 N GLU B 4 SHEET 3 AA5 7 VAL B 41 LEU B 44 1 O PHE B 43 N LEU B 14 SHEET 4 AA5 7 VAL B 248 ASP B 252 -1 O ILE B 250 N LEU B 42 SHEET 5 AA5 7 GLY B 110 ASP B 117 -1 N LEU B 113 O ALA B 249 SHEET 6 AA5 7 ARG B 270 ILE B 276 -1 O GLU B 272 N ARG B 114 SHEET 7 AA5 7 LEU B 79 TYR B 83 -1 N ILE B 82 O MET B 271 SHEET 1 AA6 3 GLN B 238 TRP B 241 0 SHEET 2 AA6 3 THR B 125 ASN B 129 -1 N THR B 125 O TRP B 241 SHEET 3 AA6 3 THR B 256 ALA B 260 -1 O GLN B 257 N ALA B 128 SHEET 1 AA7 3 ALA B 177 PRO B 180 0 SHEET 2 AA7 3 ARG B 149 HIS B 152 -1 N ALA B 150 O HIS B 179 SHEET 3 AA7 3 THR B 199 PHE B 202 -1 O THR B 200 N ARG B 151 SHEET 1 AA8 2 VAL B 182 THR B 184 0 SHEET 2 AA8 2 LYS B 191 LEU B 193 -1 O VAL B 192 N ARG B 183 LINK OD1 ASP A 100 MG MG A 300 1555 1555 2.26 LINK MG MG A 300 O HOH A 521 1555 1555 2.64 LINK OD1 ASP B 100 MG MG B 300 1555 1555 2.30 CISPEP 1 ASN A 218 PRO A 219 0 13.83 CISPEP 2 ASN B 218 PRO B 219 0 12.55 SITE 1 AC1 4 HIS A 98 ASP A 100 HIS A 258 HOH A 521 SITE 1 AC2 3 HIS B 98 ASP B 100 HIS B 258 CRYST1 81.180 84.890 95.680 90.00 110.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012318 0.000000 0.004613 0.00000 SCALE2 0.000000 0.011780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011160 0.00000