HEADER DE NOVO PROTEIN 01-MAY-17 5VNV TITLE CRYSTAL STRUCTURE OF NB.B201 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NB.B201; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: BL21 KEYWDS NANOBODY, SYNTHETIC PROTEIN, LLAMA, CAMELID, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.C.KRUSE,C.MCMAHON REVDAT 4 04-OCT-23 5VNV 1 LINK REVDAT 3 18-APR-18 5VNV 1 REMARK REVDAT 2 14-MAR-18 5VNV 1 JRNL REVDAT 1 21-FEB-18 5VNV 0 JRNL AUTH C.MCMAHON,A.S.BAIER,R.PASCOLUTTI,M.WEGRECKI,S.ZHENG,J.X.ONG, JRNL AUTH 2 S.C.ERLANDSON,D.HILGER,S.G.F.RASMUSSEN,A.M.RING,A.MANGLIK, JRNL AUTH 3 A.C.KRUSE JRNL TITL YEAST SURFACE DISPLAY PLATFORM FOR RAPID DISCOVERY OF JRNL TITL 2 CONFORMATIONALLY SELECTIVE NANOBODIES. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 289 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29434346 JRNL DOI 10.1038/S41594-018-0028-6 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575-0000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 29221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9434 - 3.7950 1.00 2710 147 0.1678 0.2132 REMARK 3 2 3.7950 - 3.0123 1.00 2719 138 0.1610 0.1842 REMARK 3 3 3.0123 - 2.6316 1.00 2707 145 0.1780 0.2108 REMARK 3 4 2.6316 - 2.3910 1.00 2700 141 0.1809 0.2145 REMARK 3 5 2.3910 - 2.2196 1.00 2673 144 0.1746 0.1840 REMARK 3 6 2.2196 - 2.0888 1.00 2706 141 0.1603 0.1732 REMARK 3 7 2.0888 - 1.9842 0.99 2706 141 0.1613 0.1969 REMARK 3 8 1.9842 - 1.8978 0.99 2700 139 0.1671 0.2194 REMARK 3 9 1.8978 - 1.8247 0.99 2682 148 0.1844 0.2445 REMARK 3 10 1.8247 - 1.7618 0.99 2703 141 0.1921 0.2247 REMARK 3 11 1.7618 - 1.7067 0.99 2659 142 0.1876 0.2153 REMARK 3 12 1.7067 - 1.6579 0.99 2678 141 0.2204 0.2189 REMARK 3 13 1.6579 - 1.6142 0.98 2696 145 0.2321 0.2422 REMARK 3 14 1.6142 - 1.5748 0.99 2656 141 0.2474 0.2588 REMARK 3 15 1.5748 - 1.5390 0.99 2657 138 0.2593 0.3115 REMARK 3 16 1.5390 - 1.5063 0.98 2643 140 0.2532 0.2662 REMARK 3 17 1.5063 - 1.4762 0.98 2696 142 0.2658 0.2543 REMARK 3 18 1.4762 - 1.4483 0.96 2557 137 0.2791 0.3300 REMARK 3 19 1.4483 - 1.4224 0.86 2335 125 0.3058 0.3162 REMARK 3 20 1.4224 - 1.3983 0.72 1942 105 0.3037 0.3069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 999 REMARK 3 ANGLE : 0.994 1348 REMARK 3 CHIRALITY : 0.089 143 REMARK 3 PLANARITY : 0.005 169 REMARK 3 DIHEDRAL : 19.699 361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3492 -14.9601 10.3239 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.2557 REMARK 3 T33: 0.2328 T12: 0.0422 REMARK 3 T13: 0.0618 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.1248 L22: 0.0373 REMARK 3 L33: 0.1245 L12: 0.0077 REMARK 3 L13: 0.1076 L23: 0.0435 REMARK 3 S TENSOR REMARK 3 S11: -0.0870 S12: 0.1953 S13: -0.3388 REMARK 3 S21: -0.5219 S22: -0.0115 S23: -0.2544 REMARK 3 S31: 0.4976 S32: 0.4345 S33: 0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4200 -25.1760 23.6146 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.1101 REMARK 3 T33: 0.1989 T12: 0.0009 REMARK 3 T13: -0.0044 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.6427 L22: 0.5399 REMARK 3 L33: 0.1621 L12: 0.2639 REMARK 3 L13: 0.1597 L23: 0.1660 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.2194 S13: 0.0170 REMARK 3 S21: -0.1531 S22: -0.0675 S23: -0.0075 REMARK 3 S31: 0.1040 S32: 0.0880 S33: -0.0991 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1907 -15.7754 18.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.2004 REMARK 3 T33: 0.1646 T12: 0.0418 REMARK 3 T13: -0.0001 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1066 L22: 0.2347 REMARK 3 L33: 0.0502 L12: 0.0483 REMARK 3 L13: -0.0586 L23: 0.1156 REMARK 3 S TENSOR REMARK 3 S11: -0.1939 S12: 0.1412 S13: 0.3071 REMARK 3 S21: -0.1636 S22: 0.3090 S23: 0.1185 REMARK 3 S31: 0.3289 S32: 0.0757 S33: 0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1176 -6.6668 11.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1758 REMARK 3 T33: 0.1801 T12: 0.0104 REMARK 3 T13: -0.0035 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.2021 L22: 0.4551 REMARK 3 L33: 1.0076 L12: 0.2057 REMARK 3 L13: -0.0859 L23: -0.6867 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.0414 S13: -0.0479 REMARK 3 S21: -0.1845 S22: 0.0166 S23: -0.1135 REMARK 3 S31: 0.1991 S32: 0.1654 S33: 0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0071 -8.0739 14.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.1518 REMARK 3 T33: 0.1659 T12: -0.0140 REMARK 3 T13: -0.0530 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9955 L22: 1.0316 REMARK 3 L33: 1.3857 L12: -0.4290 REMARK 3 L13: 0.0106 L23: -1.3866 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.0275 S13: 0.0153 REMARK 3 S21: -0.3405 S22: 0.0480 S23: 0.1985 REMARK 3 S31: 0.2462 S32: -0.1129 S33: 0.1136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9520 -9.8074 20.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1488 REMARK 3 T33: 0.1597 T12: 0.0132 REMARK 3 T13: -0.0162 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.0308 L22: 0.6126 REMARK 3 L33: 0.9870 L12: 0.0123 REMARK 3 L13: -0.1792 L23: -0.2716 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0230 S13: -0.0596 REMARK 3 S21: -0.0073 S22: -0.0025 S23: 0.0312 REMARK 3 S31: 0.1490 S32: 0.0902 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0637 -16.8901 15.4317 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.1587 REMARK 3 T33: 0.1884 T12: -0.0265 REMARK 3 T13: -0.0592 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.4143 L22: 0.7425 REMARK 3 L33: 0.3824 L12: -0.4271 REMARK 3 L13: 0.0578 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0571 S13: -0.0242 REMARK 3 S21: -0.2774 S22: 0.0199 S23: 0.1595 REMARK 3 S31: 0.3505 S32: -0.0682 S33: -0.0007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5793 -4.7188 4.3978 REMARK 3 T TENSOR REMARK 3 T11: 0.2783 T22: 0.2092 REMARK 3 T33: 0.1743 T12: 0.0188 REMARK 3 T13: 0.0050 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0472 L22: 0.2409 REMARK 3 L33: 0.5860 L12: 0.1075 REMARK 3 L13: 0.1168 L23: 0.4365 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.1450 S13: 0.0212 REMARK 3 S21: -0.6740 S22: 0.1429 S23: 0.0562 REMARK 3 S31: 0.0506 S32: 0.1218 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1722 -27.4268 18.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.3547 T22: 0.1431 REMARK 3 T33: 0.2730 T12: -0.0179 REMARK 3 T13: 0.0113 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.5068 L22: 0.1228 REMARK 3 L33: 0.1309 L12: -0.2042 REMARK 3 L13: 0.2894 L23: -0.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: -0.2138 S13: -0.4230 REMARK 3 S21: -0.5666 S22: -0.0949 S23: 0.1995 REMARK 3 S31: 0.3814 S32: -0.0417 S33: -0.0254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016 REMARK 200 DATA SCALING SOFTWARE : XDS NOV 1, 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 11.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88800 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 5IMM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM FORMATE, BIS-TRIS PROPANE PH REMARK 280 9, PEG MME 2000, SODIUM CHLORIDE, HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 53.37550 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.11600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.05800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.37550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.17400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.17400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.37550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.05800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 53.37550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.11600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 53.37550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.11600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 53.37550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.17400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 13.05800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.37550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 13.05800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.17400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 53.37550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 53.37550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.11600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C24 1PE A 201 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 348 O HOH A 359 1.75 REMARK 500 O LYS A 43 O HOH A 301 1.92 REMARK 500 O HOH A 334 O HOH A 384 2.02 REMARK 500 O HOH A 309 O HOH A 412 2.10 REMARK 500 O HOH A 330 O HOH A 349 2.12 REMARK 500 O HOH A 405 O HOH A 409 2.12 REMARK 500 O HOH A 310 O HOH A 334 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 426 O HOH A 434 3545 2.11 REMARK 500 O HOH A 409 O HOH A 410 8556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 201 REMARK 610 1PE A 202 REMARK 610 1PE A 203 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 206 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 13 OE1 REMARK 620 2 TYR A 27 OH 42.1 REMARK 620 3 ASP A 30 OD2 39.0 6.1 REMARK 620 4 GLU A 120 O 124.0 114.2 120.2 REMARK 620 5 HOH A 327 O 109.1 70.2 71.4 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 204 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 28 O REMARK 620 2 ASN A 73 O 130.6 REMARK 620 3 ASN A 76 OD1 81.8 88.1 REMARK 620 4 HOH A 327 O 106.7 88.7 170.8 REMARK 620 5 HOH A 332 O 54.3 78.7 94.3 93.5 REMARK 620 6 HOH A 378 O 143.0 80.8 80.4 90.6 159.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 207 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 O REMARK 620 2 THR A 55 OG1 89.6 REMARK 620 3 ASN A 56 OD1 88.6 70.4 REMARK 620 4 GLY A 65 O 89.2 19.8 50.6 REMARK 620 5 HOH A 316 O 73.0 118.7 158.8 136.8 REMARK 620 6 HOH A 335 O 92.8 177.6 109.4 159.9 62.3 REMARK 620 7 HOH A 414 O 166.9 95.8 82.0 91.9 114.1 81.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 205 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 57 O REMARK 620 2 THR A 57 O 0.0 REMARK 620 3 FMT A 208 O1 86.9 86.9 REMARK 620 4 FMT A 208 O2 73.8 73.8 38.6 REMARK 620 5 HOH A 303 O 88.9 88.9 78.2 43.5 REMARK 620 6 HOH A 358 O 77.8 77.8 158.7 121.4 86.6 REMARK 620 7 HOH A 358 O 144.4 144.4 57.5 77.1 83.9 136.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VNW RELATED DB: PDB DBREF 5VNV A 1 120 PDB 5VNV 5VNV 1 120 SEQRES 1 A 120 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 120 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 120 TYR ILE SER ASP ALA TYR TYR MET GLY TRP TYR ARG GLN SEQRES 4 A 120 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA THR ILE THR SEQRES 5 A 120 HIS GLY THR ASN THR TYR TYR ALA ASP SER VAL LYS GLY SEQRES 6 A 120 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 A 120 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 A 120 VAL TYR TYR CYS ALA VAL LEU GLU THR ARG SER TYR SER SEQRES 9 A 120 PHE ARG TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 10 A 120 SER LEU GLU HET 1PE A 201 15 HET 1PE A 202 8 HET 1PE A 203 9 HET K A 204 1 HET K A 205 1 HET K A 206 1 HET K A 207 1 HET FMT A 208 3 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM K POTASSIUM ION HETNAM FMT FORMIC ACID HETSYN 1PE PEG400 FORMUL 2 1PE 3(C10 H22 O6) FORMUL 5 K 4(K 1+) FORMUL 9 FMT C H2 O2 FORMUL 10 HOH *134(H2 O) HELIX 1 AA1 LYS A 86 THR A 90 5 5 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 LEU A 18 ALA A 24 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 112 SER A 117 1 O SER A 117 N VAL A 12 SHEET 3 AA2 6 ALA A 91 LEU A 98 -1 N TYR A 93 O THR A 112 SHEET 4 AA2 6 TYR A 33 GLN A 39 -1 N GLY A 35 O ALA A 96 SHEET 5 AA2 6 GLU A 46 THR A 52 -1 O ALA A 49 N TRP A 36 SHEET 6 AA2 6 ASN A 56 TYR A 59 -1 O ASN A 56 N THR A 52 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 112 SER A 117 1 O SER A 117 N VAL A 12 SHEET 3 AA3 4 ALA A 91 LEU A 98 -1 N TYR A 93 O THR A 112 SHEET 4 AA3 4 ARG A 106 TRP A 108 -1 O TYR A 107 N VAL A 97 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.06 LINK OE1 GLN A 13 K K A 206 1555 1555 2.98 LINK OH TYR A 27 K K A 206 1555 4554 2.88 LINK O ILE A 28 K K A 204 1555 1555 2.82 LINK OD2 ASP A 30 K K A 206 1555 4554 3.16 LINK O HIS A 53 K K A 207 1555 1555 2.67 LINK OG1 THR A 55 K K A 207 1555 1555 2.71 LINK OD1 ASN A 56 K K A 207 1555 1555 2.92 LINK O THR A 57 K K A 205 1555 1555 2.57 LINK O THR A 57 K K A 205 1555 10555 2.91 LINK O GLY A 65 K K A 207 1555 8556 2.87 LINK O ASN A 73 K K A 204 1555 1555 2.63 LINK OD1 ASN A 76 K K A 204 1555 1555 2.68 LINK O GLU A 120 K K A 206 1555 1555 2.62 LINK K K A 204 O HOH A 327 1555 1555 2.72 LINK K K A 204 O HOH A 332 1555 1555 3.06 LINK K K A 204 O HOH A 378 1555 1555 2.81 LINK K K A 205 O1 FMT A 208 1555 10555 3.28 LINK K K A 205 O2 FMT A 208 1555 10555 3.24 LINK K K A 205 O HOH A 303 1555 10555 2.87 LINK K K A 205 O HOH A 358 1555 1555 2.75 LINK K K A 205 O HOH A 358 1555 10555 2.41 LINK K K A 206 O HOH A 327 1555 3545 2.83 LINK K K A 207 O HOH A 316 1555 8556 2.75 LINK K K A 207 O HOH A 335 1555 10555 2.74 LINK K K A 207 O HOH A 414 1555 1555 2.76 SITE 1 AC1 5 TYR A 103 SER A 104 ARG A 106 1PE A 202 SITE 2 AC1 5 1PE A 203 SITE 1 AC2 3 TYR A 33 1PE A 201 1PE A 203 SITE 1 AC3 3 PHE A 47 1PE A 201 1PE A 202 SITE 1 AC4 7 TYR A 27 ILE A 28 ASN A 73 ASN A 76 SITE 2 AC4 7 HOH A 327 HOH A 332 HOH A 378 SITE 1 AC5 4 THR A 57 FMT A 208 HOH A 303 HOH A 358 SITE 1 AC6 5 GLN A 13 TYR A 27 ASP A 30 GLU A 120 SITE 2 AC6 5 HOH A 327 SITE 1 AC7 7 HIS A 53 THR A 55 ASN A 56 GLY A 65 SITE 2 AC7 7 HOH A 316 HOH A 335 HOH A 414 SITE 1 AC8 8 ASN A 56 THR A 57 TYR A 58 TYR A 59 SITE 2 AC8 8 LYS A 64 K A 205 HOH A 303 HOH A 358 CRYST1 106.751 106.751 52.232 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019145 0.00000