data_5VNY # _entry.id 5VNY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5VNY WWPDB D_1000227742 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VNY _pdbx_database_status.recvd_initial_deposition_date 2017-05-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McMillan, B.J.' 1 ? 'Blacklow, S.C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 1750 _citation.page_last 1757 _citation.title 'Structural Basis for Regulation of ESCRT-III Complexes by Lgd.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2017.05.026 _citation.pdbx_database_id_PubMed 28564595 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'McMillan, B.J.' 1 primary 'Tibbe, C.' 2 primary 'Drabek, A.A.' 3 primary 'Seegar, T.C.M.' 4 primary 'Blacklow, S.C.' 5 primary 'Klein, T.' 6 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5VNY _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.670 _cell.length_a_esd ? _cell.length_b 29.670 _cell.length_b_esd ? _cell.length_c 139.110 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lethal (2) giant discs 1, isoform B' 7426.284 1 ? ? 'DM14-3 domain (UNP residues 359-423)' ? 2 water nat water 18.015 118 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'STN(MSE)LEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKLYKAGKPVPYDELPVPPGFG' _entity_poly.pdbx_seq_one_letter_code_can STNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKLYKAGKPVPYDELPVPPGFG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 ASN n 1 4 MSE n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 LEU n 1 9 GLN n 1 10 GLN n 1 11 ARG n 1 12 LEU n 1 13 GLU n 1 14 LYS n 1 15 TYR n 1 16 GLN n 1 17 SER n 1 18 VAL n 1 19 GLU n 1 20 ALA n 1 21 ALA n 1 22 ALA n 1 23 LYS n 1 24 ALA n 1 25 GLU n 1 26 ASN n 1 27 ASN n 1 28 SER n 1 29 GLY n 1 30 LYS n 1 31 ALA n 1 32 ARG n 1 33 ARG n 1 34 PHE n 1 35 GLY n 1 36 ARG n 1 37 ILE n 1 38 VAL n 1 39 LYS n 1 40 GLN n 1 41 TYR n 1 42 GLU n 1 43 ASP n 1 44 ALA n 1 45 ILE n 1 46 LYS n 1 47 LEU n 1 48 TYR n 1 49 LYS n 1 50 ALA n 1 51 GLY n 1 52 LYS n 1 53 PRO n 1 54 VAL n 1 55 PRO n 1 56 TYR n 1 57 ASP n 1 58 GLU n 1 59 LEU n 1 60 PRO n 1 61 VAL n 1 62 PRO n 1 63 PRO n 1 64 GLY n 1 65 PHE n 1 66 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 66 _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'l(2)gd1, CG4713, Dmel_CG4713' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code M9NEZ0_DROME _struct_ref.pdbx_db_accession M9NEZ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYEDAIKLYKAGKPVPYDELPVPPGFG _struct_ref.pdbx_align_begin 359 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VNY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 66 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession M9NEZ0 _struct_ref_seq.db_align_beg 359 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 423 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 359 _struct_ref_seq.pdbx_auth_seq_align_end 423 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5VNY _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code M9NEZ0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 358 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VNY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG2000 MME, Tris, pH 8.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Cryo-cooled double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VNY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 46405 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.61 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low 1.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value 0.962 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.608 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5VNY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.101 _refine.ls_d_res_low 34.778 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 46256 _refine.ls_number_reflns_R_free 3554 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.21 _refine.ls_percent_reflns_R_free 7.68 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1703 _refine.ls_R_factor_R_free 0.1782 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1697 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.99 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.10 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 514 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 118 _refine_hist.number_atoms_total 632 _refine_hist.d_res_high 1.101 _refine_hist.d_res_low 34.778 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 524 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.897 ? 705 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.431 ? 208 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.067 ? 72 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 95 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.1007 1.1158 . . 79 972 56.00 . . . 0.3373 . 0.3307 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1158 1.1317 . . 106 1253 70.00 . . . 0.2866 . 0.3146 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1317 1.1486 . . 125 1587 89.00 . . . 0.2773 . 0.2663 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1486 1.1666 . . 142 1663 94.00 . . . 0.2403 . 0.2599 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1666 1.1857 . . 146 1797 99.00 . . . 0.2217 . 0.2445 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1857 1.2061 . . 148 1723 99.00 . . . 0.2332 . 0.2312 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2061 1.2281 . . 150 1786 100.00 . . . 0.2157 . 0.2222 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2281 1.2517 . . 145 1773 100.00 . . . 0.1956 . 0.2078 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2517 1.2772 . . 149 1763 100.00 . . . 0.1933 . 0.2079 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2772 1.3050 . . 148 1775 100.00 . . . 0.1961 . 0.1976 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3050 1.3354 . . 147 1746 100.00 . . . 0.2044 . 0.1937 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3354 1.3688 . . 145 1766 100.00 . . . 0.1964 . 0.1931 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3688 1.4058 . . 153 1816 100.00 . . . 0.1879 . 0.1913 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4058 1.4471 . . 156 1752 100.00 . . . 0.2026 . 0.1849 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4471 1.4938 . . 145 1770 100.00 . . . 0.1620 . 0.1706 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4938 1.5472 . . 150 1795 100.00 . . . 0.1832 . 0.1616 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5472 1.6092 . . 143 1757 100.00 . . . 0.1724 . 0.1567 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6092 1.6824 . . 149 1773 100.00 . . . 0.1577 . 0.1500 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6824 1.7711 . . 148 1792 100.00 . . . 0.1692 . 0.1502 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7711 1.8821 . . 148 1781 100.00 . . . 0.1833 . 0.1549 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8821 2.0274 . . 142 1745 100.00 . . . 0.1476 . 0.1526 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0274 2.2314 . . 151 1791 100.00 . . . 0.1681 . 0.1572 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2314 2.5542 . . 151 1765 100.00 . . . 0.1549 . 0.1461 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5542 3.2176 . . 142 1798 100.00 . . . 0.1785 . 0.1578 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2176 34.7949 . . 146 1763 100.00 . . . 0.1694 . 0.1629 . . . . . . . . . . # _struct.entry_id 5VNY _struct.title 'Crystal structure of DM14-3 domain of Lgd' _struct.pdbx_descriptor 'Lethal (2) giant discs 1, isoform B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VNY _struct_keywords.text 'ESCRT, ENDOCYTOSIS, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'ENDOCYTOSIS, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 3 ? ALA A 24 ? ASN A 360 ALA A 381 1 ? 22 HELX_P HELX_P2 AA2 ASN A 27 ? ALA A 50 ? ASN A 384 ALA A 407 1 ? 24 HELX_P HELX_P3 AA3 PRO A 55 ? LEU A 59 ? PRO A 412 LEU A 416 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 3 C ? ? ? 1_555 A MSE 4 N ? ? A ASN 360 A MSE 361 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 4 C ? ? ? 1_555 A LEU 5 N ? ? A MSE 361 A LEU 362 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5VNY _atom_sites.fract_transf_matrix[1][1] 0.033704 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007189 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 358 ? ? ? A . n A 1 2 THR 2 359 359 THR THR A . n A 1 3 ASN 3 360 360 ASN ASN A . n A 1 4 MSE 4 361 361 MSE MSE A . n A 1 5 LEU 5 362 362 LEU LEU A . n A 1 6 GLU 6 363 363 GLU GLU A . n A 1 7 ALA 7 364 364 ALA ALA A . n A 1 8 LEU 8 365 365 LEU LEU A . n A 1 9 GLN 9 366 366 GLN GLN A . n A 1 10 GLN 10 367 367 GLN GLN A . n A 1 11 ARG 11 368 368 ARG ARG A . n A 1 12 LEU 12 369 369 LEU LEU A . n A 1 13 GLU 13 370 370 GLU GLU A . n A 1 14 LYS 14 371 371 LYS LYS A . n A 1 15 TYR 15 372 372 TYR TYR A . n A 1 16 GLN 16 373 373 GLN GLN A . n A 1 17 SER 17 374 374 SER SER A . n A 1 18 VAL 18 375 375 VAL VAL A . n A 1 19 GLU 19 376 376 GLU GLU A . n A 1 20 ALA 20 377 377 ALA ALA A . n A 1 21 ALA 21 378 378 ALA ALA A . n A 1 22 ALA 22 379 379 ALA ALA A . n A 1 23 LYS 23 380 380 LYS LYS A . n A 1 24 ALA 24 381 381 ALA ALA A . n A 1 25 GLU 25 382 382 GLU GLU A . n A 1 26 ASN 26 383 383 ASN ASN A . n A 1 27 ASN 27 384 384 ASN ASN A . n A 1 28 SER 28 385 385 SER SER A . n A 1 29 GLY 29 386 386 GLY GLY A . n A 1 30 LYS 30 387 387 LYS LYS A . n A 1 31 ALA 31 388 388 ALA ALA A . n A 1 32 ARG 32 389 389 ARG ARG A . n A 1 33 ARG 33 390 390 ARG ARG A . n A 1 34 PHE 34 391 391 PHE PHE A . n A 1 35 GLY 35 392 392 GLY GLY A . n A 1 36 ARG 36 393 393 ARG ARG A . n A 1 37 ILE 37 394 394 ILE ILE A . n A 1 38 VAL 38 395 395 VAL VAL A . n A 1 39 LYS 39 396 396 LYS LYS A . n A 1 40 GLN 40 397 397 GLN GLN A . n A 1 41 TYR 41 398 398 TYR TYR A . n A 1 42 GLU 42 399 399 GLU GLU A . n A 1 43 ASP 43 400 400 ASP ASP A . n A 1 44 ALA 44 401 401 ALA ALA A . n A 1 45 ILE 45 402 402 ILE ILE A . n A 1 46 LYS 46 403 403 LYS LYS A . n A 1 47 LEU 47 404 404 LEU LEU A . n A 1 48 TYR 48 405 405 TYR TYR A . n A 1 49 LYS 49 406 406 LYS LYS A . n A 1 50 ALA 50 407 407 ALA ALA A . n A 1 51 GLY 51 408 408 GLY GLY A . n A 1 52 LYS 52 409 409 LYS LYS A . n A 1 53 PRO 53 410 410 PRO PRO A . n A 1 54 VAL 54 411 411 VAL VAL A . n A 1 55 PRO 55 412 412 PRO PRO A . n A 1 56 TYR 56 413 413 TYR TYR A . n A 1 57 ASP 57 414 414 ASP ASP A . n A 1 58 GLU 58 415 415 GLU GLU A . n A 1 59 LEU 59 416 416 LEU LEU A . n A 1 60 PRO 60 417 417 PRO PRO A . n A 1 61 VAL 61 418 418 VAL VAL A . n A 1 62 PRO 62 419 419 PRO PRO A . n A 1 63 PRO 63 420 420 PRO PRO A . n A 1 64 GLY 64 421 421 GLY GLY A . n A 1 65 PHE 65 422 422 PHE PHE A . n A 1 66 GLY 66 423 423 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 128 HOH HOH A . B 2 HOH 2 502 108 HOH HOH A . B 2 HOH 3 503 129 HOH HOH A . B 2 HOH 4 504 106 HOH HOH A . B 2 HOH 5 505 14 HOH HOH A . B 2 HOH 6 506 110 HOH HOH A . B 2 HOH 7 507 2 HOH HOH A . B 2 HOH 8 508 71 HOH HOH A . B 2 HOH 9 509 111 HOH HOH A . B 2 HOH 10 510 50 HOH HOH A . B 2 HOH 11 511 75 HOH HOH A . B 2 HOH 12 512 5 HOH HOH A . B 2 HOH 13 513 69 HOH HOH A . B 2 HOH 14 514 114 HOH HOH A . B 2 HOH 15 515 8 HOH HOH A . B 2 HOH 16 516 3 HOH HOH A . B 2 HOH 17 517 22 HOH HOH A . B 2 HOH 18 518 65 HOH HOH A . B 2 HOH 19 519 36 HOH HOH A . B 2 HOH 20 520 51 HOH HOH A . B 2 HOH 21 521 78 HOH HOH A . B 2 HOH 22 522 38 HOH HOH A . B 2 HOH 23 523 34 HOH HOH A . B 2 HOH 24 524 43 HOH HOH A . B 2 HOH 25 525 45 HOH HOH A . B 2 HOH 26 526 28 HOH HOH A . B 2 HOH 27 527 11 HOH HOH A . B 2 HOH 28 528 84 HOH HOH A . B 2 HOH 29 529 63 HOH HOH A . B 2 HOH 30 530 29 HOH HOH A . B 2 HOH 31 531 27 HOH HOH A . B 2 HOH 32 532 103 HOH HOH A . B 2 HOH 33 533 21 HOH HOH A . B 2 HOH 34 534 25 HOH HOH A . B 2 HOH 35 535 23 HOH HOH A . B 2 HOH 36 536 41 HOH HOH A . B 2 HOH 37 537 24 HOH HOH A . B 2 HOH 38 538 20 HOH HOH A . B 2 HOH 39 539 31 HOH HOH A . B 2 HOH 40 540 9 HOH HOH A . B 2 HOH 41 541 112 HOH HOH A . B 2 HOH 42 542 13 HOH HOH A . B 2 HOH 43 543 7 HOH HOH A . B 2 HOH 44 544 19 HOH HOH A . B 2 HOH 45 545 98 HOH HOH A . B 2 HOH 46 546 58 HOH HOH A . B 2 HOH 47 547 46 HOH HOH A . B 2 HOH 48 548 30 HOH HOH A . B 2 HOH 49 549 6 HOH HOH A . B 2 HOH 50 550 86 HOH HOH A . B 2 HOH 51 551 4 HOH HOH A . B 2 HOH 52 552 17 HOH HOH A . B 2 HOH 53 553 55 HOH HOH A . B 2 HOH 54 554 100 HOH HOH A . B 2 HOH 55 555 16 HOH HOH A . B 2 HOH 56 556 44 HOH HOH A . B 2 HOH 57 557 102 HOH HOH A . B 2 HOH 58 558 40 HOH HOH A . B 2 HOH 59 559 117 HOH HOH A . B 2 HOH 60 560 94 HOH HOH A . B 2 HOH 61 561 49 HOH HOH A . B 2 HOH 62 562 116 HOH HOH A . B 2 HOH 63 563 109 HOH HOH A . B 2 HOH 64 564 96 HOH HOH A . B 2 HOH 65 565 18 HOH HOH A . B 2 HOH 66 566 12 HOH HOH A . B 2 HOH 67 567 104 HOH HOH A . B 2 HOH 68 568 115 HOH HOH A . B 2 HOH 69 569 107 HOH HOH A . B 2 HOH 70 570 77 HOH HOH A . B 2 HOH 71 571 10 HOH HOH A . B 2 HOH 72 572 59 HOH HOH A . B 2 HOH 73 573 95 HOH HOH A . B 2 HOH 74 574 66 HOH HOH A . B 2 HOH 75 575 32 HOH HOH A . B 2 HOH 76 576 113 HOH HOH A . B 2 HOH 77 577 68 HOH HOH A . B 2 HOH 78 578 67 HOH HOH A . B 2 HOH 79 579 61 HOH HOH A . B 2 HOH 80 580 119 HOH HOH A . B 2 HOH 81 581 82 HOH HOH A . B 2 HOH 82 582 87 HOH HOH A . B 2 HOH 83 583 42 HOH HOH A . B 2 HOH 84 584 33 HOH HOH A . B 2 HOH 85 585 79 HOH HOH A . B 2 HOH 86 586 26 HOH HOH A . B 2 HOH 87 587 35 HOH HOH A . B 2 HOH 88 588 80 HOH HOH A . B 2 HOH 89 589 1 HOH HOH A . B 2 HOH 90 590 47 HOH HOH A . B 2 HOH 91 591 126 HOH HOH A . B 2 HOH 92 592 85 HOH HOH A . B 2 HOH 93 593 52 HOH HOH A . B 2 HOH 94 594 130 HOH HOH A . B 2 HOH 95 595 74 HOH HOH A . B 2 HOH 96 596 37 HOH HOH A . B 2 HOH 97 597 57 HOH HOH A . B 2 HOH 98 598 123 HOH HOH A . B 2 HOH 99 599 125 HOH HOH A . B 2 HOH 100 600 101 HOH HOH A . B 2 HOH 101 601 97 HOH HOH A . B 2 HOH 102 602 54 HOH HOH A . B 2 HOH 103 603 48 HOH HOH A . B 2 HOH 104 604 70 HOH HOH A . B 2 HOH 105 605 53 HOH HOH A . B 2 HOH 106 606 56 HOH HOH A . B 2 HOH 107 607 122 HOH HOH A . B 2 HOH 108 608 72 HOH HOH A . B 2 HOH 109 609 105 HOH HOH A . B 2 HOH 110 610 60 HOH HOH A . B 2 HOH 111 611 39 HOH HOH A . B 2 HOH 112 612 15 HOH HOH A . B 2 HOH 113 613 73 HOH HOH A . B 2 HOH 114 614 124 HOH HOH A . B 2 HOH 115 615 62 HOH HOH A . B 2 HOH 116 616 127 HOH HOH A . B 2 HOH 117 617 64 HOH HOH A . B 2 HOH 118 618 83 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 361 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 4460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 578 ? B HOH . 2 1 A HOH 589 ? B HOH . 3 1 A HOH 612 ? B HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.2458 _pdbx_refine_tls.origin_y 26.5643 _pdbx_refine_tls.origin_z 60.2038 _pdbx_refine_tls.T[1][1] 0.0991 _pdbx_refine_tls.T[2][2] 0.1454 _pdbx_refine_tls.T[3][3] 0.1149 _pdbx_refine_tls.T[1][2] 0.0003 _pdbx_refine_tls.T[1][3] 0.0021 _pdbx_refine_tls.T[2][3] -0.0126 _pdbx_refine_tls.L[1][1] 0.0289 _pdbx_refine_tls.L[2][2] 0.0669 _pdbx_refine_tls.L[3][3] 0.1477 _pdbx_refine_tls.L[1][2] 0.0119 _pdbx_refine_tls.L[1][3] 0.0588 _pdbx_refine_tls.L[2][3] -0.0353 _pdbx_refine_tls.S[1][1] -0.0126 _pdbx_refine_tls.S[1][2] 0.0798 _pdbx_refine_tls.S[1][3] 0.0280 _pdbx_refine_tls.S[2][1] 0.0034 _pdbx_refine_tls.S[2][2] -0.0018 _pdbx_refine_tls.S[2][3] 0.0516 _pdbx_refine_tls.S[3][1] -0.0413 _pdbx_refine_tls.S[3][2] -0.0448 _pdbx_refine_tls.S[3][3] 0.0079 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 618 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.31 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 358 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #