HEADER TRANSFERASE 02-MAY-17 5VOG TITLE CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM NEISSERIA GONORRHOEAE TITLE 2 WITH BOUND PPGPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: ESCNG_40048, WHOF_00431, WHOF_02526C, WHOG_01129, WHOG_02374C, SOURCE 5 WHOK_01250, WHOK_02372C, WHOM_00300, WHOM_02380C, WHON_00453, SOURCE 6 WHON_02375C, WHOU_01208, WHOU_02454C, WHOV_00719, WHOV_02442C, SOURCE 7 WHOW_01101, WHOW_02437C, WHOX_00398, WHOX_02372C, WHOZ_01227, SOURCE 8 WHOZ_02445C; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: NEGOA.19192.A.B1 KEYWDS SSGCID, PPGPP, POSSIBLE PHOSPHORIBOSYLTRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 04-OCT-23 5VOG 1 HETSYN LINK REVDAT 3 05-JUL-17 5VOG 1 JRNL REVDAT 2 31-MAY-17 5VOG 1 REMARK REVDAT 1 24-MAY-17 5VOG 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM NEISSERIA JRNL TITL 2 GONORRHOEAE WITH BOUND PPGPP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2744: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6499 - 3.6145 0.98 2510 146 0.1515 0.1697 REMARK 3 2 3.6145 - 2.8691 1.00 2424 143 0.1530 0.1760 REMARK 3 3 2.8691 - 2.5065 1.00 2447 139 0.1518 0.1855 REMARK 3 4 2.5065 - 2.2774 1.00 2416 138 0.1528 0.1788 REMARK 3 5 2.2774 - 2.1141 1.00 2412 127 0.1439 0.1691 REMARK 3 6 2.1141 - 1.9895 1.00 2436 121 0.1512 0.1834 REMARK 3 7 1.9895 - 1.8899 1.00 2391 142 0.1476 0.1905 REMARK 3 8 1.8899 - 1.8076 1.00 2410 129 0.1357 0.1886 REMARK 3 9 1.8076 - 1.7380 1.00 2408 127 0.1269 0.1591 REMARK 3 10 1.7380 - 1.6780 1.00 2404 139 0.1320 0.1714 REMARK 3 11 1.6780 - 1.6256 1.00 2363 147 0.1340 0.1897 REMARK 3 12 1.6256 - 1.5791 0.99 2356 160 0.1418 0.1730 REMARK 3 13 1.5791 - 1.5375 0.99 2401 125 0.1470 0.2055 REMARK 3 14 1.5375 - 1.5000 1.00 2389 138 0.1618 0.2028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1531 REMARK 3 ANGLE : 0.869 2108 REMARK 3 CHIRALITY : 0.055 237 REMARK 3 PLANARITY : 0.004 277 REMARK 3 DIHEDRAL : 9.454 919 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000226604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.635 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.493 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.57 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 2JKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NEGOA.19192.A.B1.PS38045 AT 17 MG/ML REMARK 280 MIXED 1:1 WITH MORPHEUS(A2): 10% (W/V) PEG-8000, 20% (V/V) REMARK 280 ETHYLENE GLYCOL, 0.1 M MES/IMIDAZOLE, PH = 5.5, 0.03 M EACH REMARK 280 MAGNESIUM CHLORIDE AND CALCIUM CHLORIDE, DIRECT CRYO, PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.77000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.77000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 52.77000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.77000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.77000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.96500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 40.63500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.96500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 40.63500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.77000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 428 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 -73.16 -109.33 REMARK 500 ASP A 119 -79.44 -75.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 HOH A 312 O 86.6 REMARK 620 3 HOH A 333 O 79.7 166.2 REMARK 620 4 HOH A 369 O 151.6 66.5 126.7 REMARK 620 5 HOH A 369 O 154.3 119.1 74.6 53.2 REMARK 620 6 HOH A 428 O 83.3 105.9 71.1 95.1 87.9 REMARK 620 7 HOH A 428 O 83.4 105.7 71.3 94.9 87.8 0.2 REMARK 620 8 HOH A 450 O 104.5 83.3 101.6 82.1 81.5 168.5 168.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A 202 O1 REMARK 620 2 EDO A 202 O2 73.5 REMARK 620 3 G4P A 203 O2C 90.6 95.6 REMARK 620 4 G4P A 203 O1D 173.0 99.5 89.9 REMARK 620 5 HOH A 316 O 89.4 85.1 179.3 90.1 REMARK 620 6 HOH A 317 O 91.8 165.2 85.8 95.2 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G4P A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-NEGOA.19192.A RELATED DB: TARGETTRACK DBREF1 5VOG A 1 175 UNP A0A1D3HIA2_NEIGO DBREF2 5VOG A A0A1D3HIA2 1 175 SEQADV 5VOG MET A -7 UNP A0A1D3HIA INITIATING METHIONINE SEQADV 5VOG ALA A -6 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A -5 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A -4 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A -3 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A -2 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A -1 UNP A0A1D3HIA EXPRESSION TAG SEQADV 5VOG HIS A 0 UNP A0A1D3HIA EXPRESSION TAG SEQRES 1 A 183 MET ALA HIS HIS HIS HIS HIS HIS MET LYS GLN LYS ILE SEQRES 2 A 183 TRP TYR THR TYR ASP ASP ILE HIS ARG VAL ILE LYS ALA SEQRES 3 A 183 LEU ALA GLU LYS ILE ARG ASN ALA GLY VAL LYS TYR ASP SEQRES 4 A 183 ALA MET ILE ALA ILE GLY GLY GLY GLY PHE ILE PRO ALA SEQRES 5 A 183 ARG MET LEU ARG CYS PHE LEU GLU ILE PRO ILE TYR ALA SEQRES 6 A 183 VAL THR THR ALA TYR TYR ASP SER ASP ASN GLU GLY GLN SEQRES 7 A 183 VAL THR GLU GLU VAL LYS LYS VAL GLN TRP LEU ASP PRO SEQRES 8 A 183 VAL PRO GLU VAL LEU ARG GLY LYS ASN VAL LEU VAL VAL SEQRES 9 A 183 ASP GLU VAL ASP ASP SER ARG VAL THR MET GLU PHE CYS SEQRES 10 A 183 LEU LYS GLU LEU LEU LYS GLU ASP PHE ASP THR VAL GLY SEQRES 11 A 183 VAL ALA VAL LEU HIS GLU LYS ILE LYS ALA LYS ALA GLY SEQRES 12 A 183 LYS ILE PRO GLU GLY ILE PRO TYR PHE SER GLY ILE THR SEQRES 13 A 183 VAL GLU ASP TRP TRP ILE ASN TYR PRO TRP ASP ALA LEU SEQRES 14 A 183 ASP ILE ASP GLU HIS ASN ARG LEU ALA GLU ALA GLY ARG SEQRES 15 A 183 GLY HET EDO A 201 4 HET EDO A 202 4 HET G4P A 203 36 HET MG A 204 1 HET MG A 205 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 G4P C10 H17 N5 O17 P4 FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *201(H2 O) HELIX 1 AA1 THR A 8 ALA A 26 1 19 HELIX 2 AA2 GLY A 40 GLU A 52 1 13 HELIX 3 AA3 PRO A 85 ARG A 89 5 5 HELIX 4 AA4 ARG A 103 LEU A 114 1 12 HELIX 5 AA5 TYR A 156 ALA A 160 5 5 HELIX 6 AA6 ASP A 162 ALA A 172 1 11 SHEET 1 AA1 2 LYS A 4 TRP A 6 0 SHEET 2 AA1 2 TRP A 153 ASN A 155 1 O ASN A 155 N ILE A 5 SHEET 1 AA2 6 GLN A 70 GLN A 79 0 SHEET 2 AA2 6 ILE A 55 ASN A 67 -1 N SER A 65 O THR A 72 SHEET 3 AA2 6 ALA A 32 GLY A 37 1 N GLY A 37 O VAL A 58 SHEET 4 AA2 6 VAL A 93 ASP A 100 1 O LEU A 94 N ILE A 34 SHEET 5 AA2 6 VAL A 121 LYS A 129 1 O GLY A 122 N VAL A 95 SHEET 6 AA2 6 TYR A 143 VAL A 149 1 O VAL A 149 N GLU A 128 LINK OD1 ASP A 82 MG MG A 205 1555 1555 2.11 LINK O1 EDO A 202 MG MG A 204 1555 1555 2.11 LINK O2 EDO A 202 MG MG A 204 1555 1555 2.15 LINK O2C G4P A 203 MG MG A 204 1555 1555 2.11 LINK O1D G4P A 203 MG MG A 204 1555 1555 2.03 LINK MG MG A 204 O HOH A 316 1555 1555 1.98 LINK MG MG A 204 O HOH A 317 1555 1555 2.09 LINK MG MG A 205 O HOH A 312 1555 1555 2.27 LINK MG MG A 205 O HOH A 333 1555 1555 2.04 LINK MG MG A 205 O HOH A 369 1555 1555 2.63 LINK MG MG A 205 O HOH A 369 1555 14555 2.92 LINK MG MG A 205 O HOH A 428 1555 1555 2.36 LINK MG MG A 205 O HOH A 428 1555 14555 2.37 LINK MG MG A 205 O HOH A 450 1555 1555 2.43 CISPEP 1 GLY A 37 GLY A 38 0 1.38 CISPEP 2 ASP A 82 PRO A 83 0 -13.61 SITE 1 AC1 4 GLU A 52 ILE A 53 PRO A 54 HOH A 379 SITE 1 AC2 7 ASP A 97 GLU A 98 THR A 105 G4P A 203 SITE 2 AC2 7 MG A 204 HOH A 316 HOH A 317 SITE 1 AC3 32 GLY A 38 GLY A 39 ARG A 48 TYR A 62 SITE 2 AC3 32 GLU A 98 VAL A 99 ASP A 100 ASP A 101 SITE 3 AC3 32 SER A 102 ARG A 103 VAL A 104 THR A 105 SITE 4 AC3 32 MET A 106 LYS A 129 TRP A 153 ILE A 154 SITE 5 AC3 32 TYR A 156 EDO A 202 MG A 204 HOH A 309 SITE 6 AC3 32 HOH A 316 HOH A 317 HOH A 324 HOH A 327 SITE 7 AC3 32 HOH A 328 HOH A 351 HOH A 352 HOH A 358 SITE 8 AC3 32 HOH A 364 HOH A 367 HOH A 384 HOH A 398 SITE 1 AC4 4 EDO A 202 G4P A 203 HOH A 316 HOH A 317 SITE 1 AC5 6 ASP A 82 HOH A 312 HOH A 333 HOH A 369 SITE 2 AC5 6 HOH A 428 HOH A 450 CRYST1 81.270 103.930 105.540 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009475 0.00000