HEADER OXIDOREDUCTASE 05-MAY-17 5VPS TITLE CRYSTAL STRUCTURE OF AN SDR FROM BURKHOLDERIA AMBIFARIA IN COMPLEX TITLE 2 WITH NADPH WITH A TCEP ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA (STRAIN MC40-6); SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: BAMMC406_2208; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BUAMA.00010.O.B1 KEYWDS SGCID, SHORT CHAIN, DEHYDROGENASE, REDUCTASE, NADP, NADPH, TCEP, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 5VPS 1 REMARK REVDAT 2 09-SEP-20 5VPS 1 JRNL REVDAT 1 24-MAY-17 5VPS 0 JRNL AUTH S.M.PATEL,T.G.SMITH,M.MORTON,K.M.STIERS,J.SERAVALLI, JRNL AUTH 2 S.J.MAYCLIN,T.E.EDWARDS,J.J.TANNER,D.F.BECKER JRNL TITL CAUTIONARY TALE OF USING TRIS(ALKYL)PHOSPHINE REDUCING JRNL TITL 2 AGENTS WITH NAD+-DEPENDENT ENZYMES. JRNL REF BIOCHEMISTRY 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32841567 JRNL DOI 10.1021/ACS.BIOCHEM.0C00490 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2744: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7730 - 3.4937 1.00 3325 145 0.1414 0.1632 REMARK 3 2 3.4937 - 2.7735 1.00 3115 169 0.1421 0.1561 REMARK 3 3 2.7735 - 2.4230 1.00 3098 151 0.1482 0.1660 REMARK 3 4 2.4230 - 2.2015 1.00 3042 159 0.1435 0.1523 REMARK 3 5 2.2015 - 2.0437 1.00 3066 139 0.1466 0.1625 REMARK 3 6 2.0437 - 1.9232 1.00 3055 135 0.1477 0.1572 REMARK 3 7 1.9232 - 1.8269 1.00 3016 141 0.1452 0.1475 REMARK 3 8 1.8269 - 1.7474 1.00 3041 146 0.1486 0.1712 REMARK 3 9 1.7474 - 1.6801 1.00 3022 133 0.1526 0.1496 REMARK 3 10 1.6801 - 1.6222 1.00 3004 155 0.1546 0.1817 REMARK 3 11 1.6222 - 1.5714 1.00 3007 123 0.1534 0.1891 REMARK 3 12 1.5714 - 1.5265 1.00 2997 130 0.1621 0.1901 REMARK 3 13 1.5265 - 1.4863 1.00 3013 139 0.1784 0.2263 REMARK 3 14 1.4863 - 1.4501 1.00 3029 133 0.1899 0.1765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2015 REMARK 3 ANGLE : 1.146 2756 REMARK 3 CHIRALITY : 0.081 324 REMARK 3 PLANARITY : 0.006 359 REMARK 3 DIHEDRAL : 18.786 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9732 -18.8580 -11.7063 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.0898 REMARK 3 T33: 0.1295 T12: -0.0332 REMARK 3 T13: -0.0441 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.2985 L22: 1.3693 REMARK 3 L33: 3.2933 L12: -0.4465 REMARK 3 L13: -1.8431 L23: 1.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.1694 S13: -0.1573 REMARK 3 S21: 0.0298 S22: -0.0422 S23: 0.1591 REMARK 3 S31: 0.1799 S32: -0.0863 S33: 0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1569 -19.8614 -21.3174 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.0951 REMARK 3 T33: 0.1007 T12: -0.0101 REMARK 3 T13: -0.0422 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.3531 L22: 1.0482 REMARK 3 L33: 0.7638 L12: 0.1553 REMARK 3 L13: -0.1530 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.1077 S13: -0.0561 REMARK 3 S21: -0.1868 S22: 0.0331 S23: 0.0185 REMARK 3 S31: 0.0937 S32: -0.1131 S33: -0.0265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3948 -4.5285 -22.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.0743 REMARK 3 T33: 0.0911 T12: 0.0103 REMARK 3 T13: -0.0097 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 8.2495 L22: 1.1238 REMARK 3 L33: 1.4348 L12: 0.6676 REMARK 3 L13: -0.8011 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.4981 S13: -0.1145 REMARK 3 S21: -0.1888 S22: 0.0946 S23: -0.0736 REMARK 3 S31: -0.0397 S32: -0.0158 S33: -0.0890 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8357 -6.8300 -11.1998 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0589 REMARK 3 T33: 0.0628 T12: 0.0039 REMARK 3 T13: -0.0133 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.0389 L22: 1.0061 REMARK 3 L33: 0.9206 L12: 0.0363 REMARK 3 L13: -0.1480 L23: -0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.0089 S13: 0.0350 REMARK 3 S21: -0.0574 S22: 0.0236 S23: 0.0076 REMARK 3 S31: -0.0016 S32: -0.0319 S33: -0.0357 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9032 -24.4805 -15.6026 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.1289 REMARK 3 T33: 0.1648 T12: -0.0122 REMARK 3 T13: 0.0524 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 7.6117 L22: 4.7352 REMARK 3 L33: 2.1388 L12: -3.8955 REMARK 3 L13: -1.4368 L23: 0.4961 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.1216 S13: 0.2570 REMARK 3 S21: -0.2197 S22: -0.0943 S23: -0.1718 REMARK 3 S31: -0.2288 S32: -0.0524 S33: -0.0640 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9045 -26.9640 -6.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1417 REMARK 3 T33: 0.1674 T12: -0.0062 REMARK 3 T13: -0.0065 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.9127 L22: 7.1018 REMARK 3 L33: 7.0059 L12: -5.1285 REMARK 3 L13: -6.5702 L23: 5.7233 REMARK 3 S TENSOR REMARK 3 S11: -0.2181 S12: -0.5140 S13: 0.1235 REMARK 3 S21: -0.0985 S22: 0.3990 S23: -0.3533 REMARK 3 S31: 0.0293 S32: 0.5603 S33: -0.1644 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0428 -13.9979 -2.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.0907 REMARK 3 T33: 0.0705 T12: 0.0015 REMARK 3 T13: -0.0064 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.3475 L22: 0.9702 REMARK 3 L33: 0.3373 L12: -0.9107 REMARK 3 L13: 0.0822 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0513 S13: -0.0375 REMARK 3 S21: -0.0123 S22: 0.0244 S23: 0.0093 REMARK 3 S31: 0.0248 S32: -0.0194 S33: -0.0240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.15 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.15 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5IDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 G4 (291317G4): 100MM POTASSIUM REMARK 280 TARTRATE, 20% PEG3350, 8MM NADP, PROTEIN CONC. 20.8MG/ML, CRYO REMARK 280 20% ETHYLENE GLYCOL: PUCK ID OPK4-15, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.04500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.58500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.04500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.58500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.04500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.58500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.04500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.58500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 56 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 647 O HOH A 716 2.13 REMARK 500 O HOH A 647 O HOH A 734 2.15 REMARK 500 O HOH A 406 O HOH A 605 2.15 REMARK 500 O HOH A 688 O HOH A 710 2.17 REMARK 500 O HOH A 402 O HOH A 517 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 113 -59.21 -133.03 REMARK 500 THR A 139 -114.58 -112.22 REMARK 500 LEU A 150 50.62 -115.76 REMARK 500 ASP A 251 13.34 -148.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 758 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9G1 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 DBREF 5VPS A 1 259 UNP B1YU47 B1YU47_BURA4 1 259 SEQADV 5VPS MET A -7 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS ALA A -6 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A -5 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A -4 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A -3 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A -2 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A -1 UNP B1YU47 EXPRESSION TAG SEQADV 5VPS HIS A 0 UNP B1YU47 EXPRESSION TAG SEQRES 1 A 267 MET ALA HIS HIS HIS HIS HIS HIS MET ASP LEU GLY ILE SEQRES 2 A 267 ALA GLY LYS THR ALA LEU VAL CYS ALA ALA SER LYS GLY SEQRES 3 A 267 LEU GLY ARG GLY CYS ALA GLU ALA LEU ALA ALA GLU GLY SEQRES 4 A 267 VAL ASN LEU VAL ILE VAL ALA ARG THR ARG ASP THR LEU SEQRES 5 A 267 GLU GLU THR ALA GLU GLU ILE ARG ALA ALA SER ASN VAL SEQRES 6 A 267 SER VAL THR ALA VAL ALA CYS ASP ILE THR THR PRO ASP SEQRES 7 A 267 GLY ARG ALA ALA ALA LEU ALA ALA CYS PRO GLN PRO ASP SEQRES 8 A 267 ILE LEU VAL ASN ASN ALA GLY GLY PRO PRO PRO GLY ASP SEQRES 9 A 267 PHE ARG ASP PHE SER HIS ASP ASP TRP ILE ARG ALA LEU SEQRES 10 A 267 GLU ALA ASN MET LEU THR PRO ILE GLU LEU ILE ARG ALA SEQRES 11 A 267 THR VAL ASP GLY MET ILE GLY ARG GLY PHE GLY ARG ILE SEQRES 12 A 267 VAL ASN ILE THR SER SER ALA VAL LYS ALA PRO ILE ASP SEQRES 13 A 267 VAL LEU ALA LEU SER ASN GLY ALA ARG SER GLY LEU THR SEQRES 14 A 267 GLY PHE VAL ALA GLY LEU SER ARG LYS VAL ALA GLY GLN SEQRES 15 A 267 GLY VAL THR ILE ASN ASN LEU LEU PRO GLY LEU PHE ASP SEQRES 16 A 267 THR ASP ARG ILE ALA THR THR LEU ALA ALA SER ALA LYS SEQRES 17 A 267 ALA GLN GLY VAL THR VAL ASP GLU LEU ARG ALA ARG ARG SEQRES 18 A 267 ALA LYS GLU ILE PRO ALA GLY ARG LEU GLY THR ARG ALA SEQRES 19 A 267 GLU PHE GLY ALA ALA CYS ALA PHE LEU CYS SER VAL HIS SEQRES 20 A 267 ALA GLY TYR ILE THR GLY GLN ASN TRP LEU LEU ASP GLY SEQRES 21 A 267 GLY ALA TYR PRO GLY THR PHE HET 9G1 A 301 64 HET EDO A 302 4 HET EDO A 303 4 HETNAM 9G1 [(4~{S})-3-AMINOCARBONYL-1-[(2~{R},3~{R},4~{S},5~{R})- HETNAM 2 9G1 5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)- HETNAM 3 9G1 3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY- HETNAM 4 9G1 OXIDANYL-PHOSPHORYL]OXY-OXIDANYL- HETNAM 5 9G1 PHOSPHORYL]OXYMETHYL]-3,4-BIS(OXIDANYL)OXOLAN-2- HETNAM 6 9G1 YL]PIPERIDIN-4-YL]-TRIS(3-HYDROXY-3-OXOPROPYL) HETNAM 7 9G1 PHOSPHANIUM HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9G1 C30 H48 N7 O23 P4 1+ FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *358(H2 O) HELIX 1 AA1 LYS A 17 GLU A 30 1 14 HELIX 2 AA2 THR A 40 SER A 55 1 16 HELIX 3 AA3 THR A 68 CYS A 79 1 12 HELIX 4 AA4 ASP A 96 PHE A 100 5 5 HELIX 5 AA5 SER A 101 MET A 113 1 13 HELIX 6 AA6 MET A 113 GLY A 131 1 19 HELIX 7 AA7 SER A 140 LYS A 144 5 5 HELIX 8 AA8 LEU A 150 ALA A 172 1 23 HELIX 9 AA9 THR A 188 GLY A 203 1 16 HELIX 10 AB1 THR A 205 ILE A 217 1 13 HELIX 11 AB2 THR A 224 CYS A 236 1 13 SHEET 1 AA1 7 VAL A 59 ALA A 63 0 SHEET 2 AA1 7 ASN A 33 ALA A 38 1 N ILE A 36 O THR A 60 SHEET 3 AA1 7 THR A 9 VAL A 12 1 N VAL A 12 O VAL A 35 SHEET 4 AA1 7 ILE A 84 ASN A 87 1 O VAL A 86 N LEU A 11 SHEET 5 AA1 7 GLY A 133 ILE A 138 1 O VAL A 136 N LEU A 85 SHEET 6 AA1 7 VAL A 176 PRO A 183 1 O LEU A 181 N ASN A 137 SHEET 7 AA1 7 ASN A 247 LEU A 250 1 O TRP A 248 N LEU A 182 SITE 1 AC1 47 ALA A 14 SER A 16 LYS A 17 GLY A 18 SITE 2 AC1 47 LEU A 19 ALA A 38 ARG A 39 THR A 40 SITE 3 AC1 47 CYS A 64 ASP A 65 ILE A 66 THR A 67 SITE 4 AC1 47 ASN A 88 ALA A 89 GLY A 90 GLY A 91 SITE 5 AC1 47 PRO A 92 THR A 139 SER A 140 SER A 141 SITE 6 AC1 47 LEU A 150 SER A 153 ARG A 157 PRO A 183 SITE 7 AC1 47 GLY A 184 LEU A 185 PHE A 186 THR A 188 SITE 8 AC1 47 ARG A 190 ILE A 191 THR A 194 HOH A 414 SITE 9 AC1 47 HOH A 415 HOH A 420 HOH A 422 HOH A 433 SITE 10 AC1 47 HOH A 434 HOH A 443 HOH A 444 HOH A 471 SITE 11 AC1 47 HOH A 484 HOH A 492 HOH A 509 HOH A 516 SITE 12 AC1 47 HOH A 524 HOH A 534 HOH A 617 SITE 1 AC2 4 HIS A 0 ALA A 29 GLY A 31 HOH A 527 SITE 1 AC3 6 ARG A 221 THR A 224 GLU A 227 HOH A 456 SITE 2 AC3 6 HOH A 461 HOH A 576 CRYST1 64.090 64.090 119.170 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008391 0.00000