HEADER HYDROLASE/HYDROLASE INHIBITOR 05-MAY-17 5VPT TITLE 2009 H1N1 PA ENDONUCLEASE IN COMPLEX WITH RO-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NUCLEASE INFLUENZA INHIBITOR RESISTANCE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KUMAR,S.W.WHITE REVDAT 4 04-OCT-23 5VPT 1 LINK REVDAT 3 01-JAN-20 5VPT 1 REMARK REVDAT 2 09-MAY-18 5VPT 1 JRNL REVDAT 1 11-APR-18 5VPT 0 JRNL AUTH J.C.JONES,G.KUMAR,S.BARMAN,I.NAJERA,S.W.WHITE,R.J.WEBBY, JRNL AUTH 2 E.A.GOVORKOVA JRNL TITL IDENTIFICATION OF THE I38T PA SUBSTITUTION AS A RESISTANCE JRNL TITL 2 MARKER FOR NEXT-GENERATION INFLUENZA VIRUS ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 29691337 JRNL DOI 10.1128/MBIO.00430-18 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 16185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID -2:176 OR RESID 201:201 OR REMARK 3 RESID 202:202 OR RESID 203:203 OR RESID 204:204 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.084 110.513 285.726 REMARK 3 T TENSOR REMARK 3 T11: 0.6681 T22: 0.3178 REMARK 3 T33: 0.4319 T12: -0.1188 REMARK 3 T13: 0.2087 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 5.7972 L22: 2.4176 REMARK 3 L33: 2.9898 L12: -0.5070 REMARK 3 L13: 0.6365 L23: -0.1505 REMARK 3 S TENSOR REMARK 3 S11: 0.1848 S12: -0.2168 S13: -0.2637 REMARK 3 S21: 0.0961 S22: -0.3023 S23: 0.0896 REMARK 3 S31: 0.6792 S32: -0.1222 S33: 0.0498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.091 REMARK 200 RESOLUTION RANGE LOW (A) : 38.495 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5VP8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.94050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.86550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.94050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.86550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.94050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.86550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.94050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.86550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.94050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.86550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.94050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.86550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.94050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.86550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.94050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.94050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.86550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.88100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 269.64300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 179.76200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 89.88100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -89.88100 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 179.76200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 26.42 -78.77 REMARK 500 THR A 97 -40.75 -143.03 REMARK 500 LYS A 139 -12.26 67.55 REMARK 500 LYS A 142 -60.30 -91.92 REMARK 500 THR A 162 -61.66 60.23 REMARK 500 ASP A 164 154.71 -46.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 93.9 REMARK 620 3 GLU A 119 OE2 166.5 92.9 REMARK 620 4 ILE A 120 O 86.6 91.6 81.6 REMARK 620 5 R07 A 204 O15 101.3 99.7 88.9 165.6 REMARK 620 6 R07 A 204 O17 90.9 174.0 81.7 85.1 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 87.3 REMARK 620 3 R07 A 204 O18 95.1 166.6 REMARK 620 4 R07 A 204 O15 116.6 90.9 76.3 REMARK 620 5 HOH A 301 O 95.0 92.7 100.2 148.4 REMARK 620 6 HOH A 303 O 167.1 82.5 96.6 71.6 77.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R07 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VP8 RELATED DB: PDB DBREF 5VPT A 1 53 UNP C3W5S0 C3W5S0_I09A0 1 53 DBREF 5VPT A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 5VPT MET A -19 UNP C3W5S0 INITIATING METHIONINE SEQADV 5VPT GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 5VPT GLY A 51 UNP C3W5S0 PHE 51 LINKER SEQADV 5VPT GLY A 52 UNP C3W5S0 HIS 52 LINKER SEQADV 5VPT SER A 53 UNP C3W5S0 PHE 53 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET SO4 A 203 5 HET R07 A 204 34 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM R07 1-[(11S)-6,11-DIHYDRODIBENZO[B,E]THIEPIN-11-YL]-5- HETNAM 2 R07 HYDROXY-3-[(2R)-1,1,1-TRIFLUOROPROPAN-2-YL]-2,3- HETNAM 3 R07 DIHYDRO-1H-PYRIDO[2,1-F][1,2,4]TRIAZINE-4,6-DIONE HETSYN R07 RO-7 FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 R07 C24 H20 F3 N3 O3 S FORMUL 6 HOH *25(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.21 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.21 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.06 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.13 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.11 LINK O ILE A 120 MN MN A 201 1555 1555 2.24 LINK MN MN A 201 O15 R07 A 204 1555 1555 2.39 LINK MN MN A 201 O17 R07 A 204 1555 1555 1.85 LINK MN MN A 202 O18 R07 A 204 1555 1555 2.06 LINK MN MN A 202 O15 R07 A 204 1555 1555 1.96 LINK MN MN A 202 O HOH A 301 1555 1555 2.45 LINK MN MN A 202 O HOH A 303 1555 1555 2.40 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 R07 A 204 SITE 1 AC2 5 GLU A 80 ASP A 108 R07 A 204 HOH A 301 SITE 2 AC2 5 HOH A 303 SITE 1 AC3 4 GLU A 31 THR A 32 ASN A 33 LYS A 34 SITE 1 AC4 15 TYR A 24 ALA A 37 ILE A 38 HIS A 41 SITE 2 AC4 15 GLU A 80 LEU A 106 ASP A 108 GLU A 119 SITE 3 AC4 15 ILE A 120 TYR A 130 LYS A 134 MN A 201 SITE 4 AC4 15 MN A 202 HOH A 303 HOH A 316 CRYST1 89.881 89.881 133.731 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007478 0.00000