HEADER UNKNOWN FUNCTION 09-MAY-17 5VR1 TITLE STRUCTURE OF A TURRIPEPTIDE FROM UNEDOGEMMULA BISAYA VENOM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TURRIPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: UNEDOGEMMULA BISAYA; SOURCE 4 ORGANISM_TAXID: 746885 KEYWDS UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.L.DALY,J.S.IMPERIAL REVDAT 3 14-JUN-23 5VR1 1 REMARK REVDAT 2 22-NOV-17 5VR1 1 JRNL REVDAT 1 15-NOV-17 5VR1 0 JRNL AUTH C.A.OMAGA,L.D.CARPIO,J.S.IMPERIAL,N.L.DALY,J.GAJEWIAK, JRNL AUTH 2 M.S.FLORES,S.S.ESPINO,S.CHRISTENSEN,O.M.FILCHAKOVA, JRNL AUTH 3 E.LOPEZ-VERA,S.RAGHURAMAN,B.M.OLIVERA,G.P.CONCEPCION JRNL TITL STRUCTURE AND BIOLOGICAL ACTIVITY OF A TURRIPEPTIDE FROM JRNL TITL 2 UNEDOGEMMULA BISAYA VENOM. JRNL REF BIOCHEMISTRY V. 56 6051 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29090914 JRNL DOI 10.1021/ACS.BIOCHEM.7B00485 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227867. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM UBI3A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-13C HSQC; 2D REMARK 210 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 -80.11 -70.35 REMARK 500 2 ALA A 9 -80.13 -68.75 REMARK 500 3 ALA A 9 -81.09 -70.54 REMARK 500 4 ALA A 9 -80.63 -69.39 REMARK 500 5 ALA A 9 -80.74 -69.64 REMARK 500 6 ALA A 9 -81.03 -69.68 REMARK 500 7 ALA A 9 -81.48 -69.51 REMARK 500 8 ALA A 9 -80.75 -69.48 REMARK 500 9 ALA A 9 -81.39 -69.86 REMARK 500 10 ALA A 9 -81.44 -69.80 REMARK 500 11 ALA A 9 -81.27 -69.85 REMARK 500 12 ALA A 9 -81.45 -70.02 REMARK 500 13 ALA A 9 -79.73 -67.13 REMARK 500 14 ALA A 9 -80.62 -70.40 REMARK 500 15 ALA A 9 -81.62 -69.30 REMARK 500 16 ALA A 9 -80.10 -66.03 REMARK 500 17 ALA A 9 -80.09 -66.00 REMARK 500 18 ALA A 9 -79.78 -68.99 REMARK 500 19 ALA A 9 -80.18 -66.30 REMARK 500 20 ALA A 9 -80.23 -66.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 3 HYP A 4 1 -139.07 REMARK 500 CYS A 5 HYP A 6 1 -139.04 REMARK 500 CYS A 3 HYP A 4 2 -139.09 REMARK 500 CYS A 5 HYP A 6 2 -139.03 REMARK 500 CYS A 3 HYP A 4 3 -139.05 REMARK 500 CYS A 5 HYP A 6 3 -139.06 REMARK 500 CYS A 3 HYP A 4 4 -139.11 REMARK 500 CYS A 5 HYP A 6 4 -139.05 REMARK 500 CYS A 3 HYP A 4 5 -139.08 REMARK 500 CYS A 5 HYP A 6 5 -139.02 REMARK 500 CYS A 3 HYP A 4 6 -139.06 REMARK 500 CYS A 5 HYP A 6 6 -139.06 REMARK 500 CYS A 3 HYP A 4 7 -139.05 REMARK 500 CYS A 5 HYP A 6 7 -139.01 REMARK 500 CYS A 3 HYP A 4 8 -139.08 REMARK 500 CYS A 5 HYP A 6 8 -139.08 REMARK 500 CYS A 3 HYP A 4 9 -139.01 REMARK 500 CYS A 5 HYP A 6 9 -139.05 REMARK 500 CYS A 3 HYP A 4 10 -139.05 REMARK 500 CYS A 5 HYP A 6 10 -139.06 REMARK 500 CYS A 3 HYP A 4 11 -139.03 REMARK 500 CYS A 5 HYP A 6 11 -139.06 REMARK 500 CYS A 3 HYP A 4 12 -139.02 REMARK 500 CYS A 5 HYP A 6 12 -139.06 REMARK 500 CYS A 3 HYP A 4 13 -139.07 REMARK 500 CYS A 5 HYP A 6 13 -139.05 REMARK 500 CYS A 3 HYP A 4 14 -139.01 REMARK 500 CYS A 5 HYP A 6 14 -139.01 REMARK 500 CYS A 3 HYP A 4 15 -139.05 REMARK 500 CYS A 5 HYP A 6 15 -139.10 REMARK 500 CYS A 3 HYP A 4 16 -139.06 REMARK 500 CYS A 5 HYP A 6 16 -139.07 REMARK 500 CYS A 3 HYP A 4 17 -139.05 REMARK 500 CYS A 5 HYP A 6 17 -139.07 REMARK 500 CYS A 3 HYP A 4 18 -139.08 REMARK 500 CYS A 5 HYP A 6 18 -139.04 REMARK 500 CYS A 3 HYP A 4 19 -139.09 REMARK 500 CYS A 5 HYP A 6 19 -139.11 REMARK 500 CYS A 3 HYP A 4 20 -139.03 REMARK 500 CYS A 5 HYP A 6 20 -139.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30291 RELATED DB: BMRB REMARK 900 STRUCTURE OF A TURRIPEPTIDE FROM UNEDOGEMMULA BISAYA VENOM DBREF 5VR1 A 1 18 PDB 5VR1 5VR1 1 18 SEQRES 1 A 18 ASP CYS CYS HYP CYS HYP ALA GLY ALA VAL ARG CYS ARG SEQRES 2 A 18 PHE ALA CYS CYS NH2 HET HYP A 4 15 HET HYP A 6 15 HET NH2 A 18 3 HETNAM HYP 4-HYDROXYPROLINE HETNAM NH2 AMINO GROUP HETSYN HYP HYDROXYPROLINE FORMUL 1 HYP 2(C5 H9 N O3) FORMUL 1 NH2 H2 N HELIX 1 AA1 ARG A 13 CYS A 17 5 5 SSBOND 1 CYS A 2 CYS A 12 1555 1555 1.94 SSBOND 2 CYS A 3 CYS A 17 1555 1555 2.11 SSBOND 3 CYS A 5 CYS A 16 1555 1555 1.95 LINK C CYS A 3 N HYP A 4 1555 1555 1.35 LINK C HYP A 4 N CYS A 5 1555 1555 1.33 LINK C CYS A 5 N HYP A 6 1555 1555 1.34 LINK C HYP A 6 N ALA A 7 1555 1555 1.33 LINK C CYS A 17 N NH2 A 18 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1