HEADER TRANSFERASE 10-MAY-17 5VRG TITLE STRUCTURAL INSIGHTS INTO LIPOPROTEIN N-ACYLATION BY ESCHERICHIA COLI TITLE 2 APOLIPOPROTEIN N-ACYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN N-ACYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LNT, CUTE, B0657, JW0654; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LNT, ACYL TRANSFERASE, MEMBRANE PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,C.L.NOLAND REVDAT 4 13-MAR-24 5VRG 1 REMARK REVDAT 3 09-AUG-17 5VRG 1 JRNL REVDAT 2 26-JUL-17 5VRG 1 JRNL REVDAT 1 12-JUL-17 5VRG 0 JRNL AUTH C.L.NOLAND,M.D.KATTKE,J.DIAO,S.L.GLOOR,H.PANTUA,M.REICHELT, JRNL AUTH 2 A.K.KATAKAM,D.YAN,J.KANG,I.ZILBERLEYB,M.XU,S.B.KAPADIA, JRNL AUTH 3 J.M.MURRAY JRNL TITL STRUCTURAL INSIGHTS INTO LIPOPROTEIN N-ACYLATION BY JRNL TITL 2 ESCHERICHIA COLI APOLIPOPROTEIN N-ACYLTRANSFERASE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6044 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28698362 JRNL DOI 10.1073/PNAS.1707813114 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2747 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 21423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0747 - 5.0337 1.00 2743 157 0.2229 0.2507 REMARK 3 2 5.0337 - 3.9963 1.00 2629 149 0.1901 0.2441 REMARK 3 3 3.9963 - 3.4914 0.91 2339 136 0.1988 0.2678 REMARK 3 4 3.4914 - 3.1723 1.00 2586 136 0.2148 0.3112 REMARK 3 5 3.1723 - 2.9450 1.00 2578 136 0.2081 0.2717 REMARK 3 6 2.9450 - 2.7714 1.00 2538 136 0.2110 0.2667 REMARK 3 7 2.7714 - 2.6326 1.00 2527 150 0.2353 0.3089 REMARK 3 8 2.6326 - 2.5180 0.93 2383 100 0.2539 0.3549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4097 REMARK 3 ANGLE : 1.029 5555 REMARK 3 CHIRALITY : 0.055 618 REMARK 3 PLANARITY : 0.008 691 REMARK 3 DIHEDRAL : 13.061 2419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1332 -40.1280 0.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.2540 REMARK 3 T33: 0.2680 T12: -0.0028 REMARK 3 T13: 0.0087 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.9392 L22: 1.6956 REMARK 3 L33: 0.7691 L12: 0.7205 REMARK 3 L13: -0.0549 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0856 S13: -0.0331 REMARK 3 S21: -0.0442 S22: -0.0050 S23: 0.1310 REMARK 3 S31: 0.0392 S32: 0.0158 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8583 -30.6057 0.6763 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.3022 REMARK 3 T33: 0.2998 T12: -0.0054 REMARK 3 T13: -0.0380 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.7620 L22: 1.2043 REMARK 3 L33: 0.6992 L12: 0.9282 REMARK 3 L13: -0.1017 L23: 0.0225 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.1110 S13: -0.0739 REMARK 3 S21: -0.0817 S22: -0.0089 S23: 0.0225 REMARK 3 S31: 0.0138 S32: -0.0199 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2506 -13.0605 -6.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.2356 T22: 0.3054 REMARK 3 T33: 0.2190 T12: -0.0116 REMARK 3 T13: 0.0096 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5820 L22: 2.3390 REMARK 3 L33: 0.7235 L12: 0.2295 REMARK 3 L13: -0.0270 L23: 0.1500 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0370 S13: -0.0338 REMARK 3 S21: -0.0448 S22: 0.0178 S23: 0.2220 REMARK 3 S31: 0.0194 S32: -0.1378 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.518 REMARK 200 RESOLUTION RANGE LOW (A) : 43.068 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM ADA PH 6.5 24% PEG 400, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.88200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.38150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.01300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.38150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.88200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.01300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 PRO A 353 REMARK 465 LEU A 354 REMARK 465 ALA A 355 REMARK 465 PRO A 356 REMARK 465 PHE A 357 REMARK 465 PHE A 358 REMARK 465 ASP A 359 REMARK 465 LEU A 360 REMARK 465 PRO A 361 REMARK 465 MET A 362 REMARK 465 ARG A 508 REMARK 465 GLN A 509 REMARK 465 ARG A 510 REMARK 465 ARG A 511 REMARK 465 LYS A 512 REMARK 465 GLY A 513 REMARK 465 ASN A 514 REMARK 465 SER A 515 REMARK 465 HIS A 516 REMARK 465 HIS A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 507 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 811 O HOH A 827 2.05 REMARK 500 O HOH A 803 O HOH A 833 2.07 REMARK 500 NE2 GLN A 241 O HOH A 701 2.13 REMARK 500 O HOH A 821 O HOH A 828 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 791 O HOH A 818 4545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 67 -70.82 -55.93 REMARK 500 PHE A 146 77.28 -152.86 REMARK 500 PRO A 147 48.80 -83.68 REMARK 500 LEU A 149 75.74 59.19 REMARK 500 GLU A 239 31.38 -79.77 REMARK 500 PRO A 266 -164.24 -69.46 REMARK 500 ALA A 323 61.93 -151.21 REMARK 500 PHE A 341 -54.85 76.40 REMARK 500 LEU A 347 111.02 79.14 REMARK 500 CYS A 387 -134.79 58.42 REMARK 500 LYS A 418 35.84 -82.82 REMARK 500 SER A 419 -166.99 -102.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 842 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 843 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 844 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 845 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 846 DISTANCE = 6.19 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 607 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 PLM A 607 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LNK A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VRH RELATED DB: PDB DBREF 5VRG A 2 512 UNP P23930 LNT_ECOLI 2 512 SEQADV 5VRG MET A -1 UNP P23930 INITIATING METHIONINE SEQADV 5VRG GLY A 0 UNP P23930 EXPRESSION TAG SEQADV 5VRG SER A 1 UNP P23930 EXPRESSION TAG SEQADV 5VRG GLY A 513 UNP P23930 EXPRESSION TAG SEQADV 5VRG ASN A 514 UNP P23930 EXPRESSION TAG SEQADV 5VRG SER A 515 UNP P23930 EXPRESSION TAG SEQADV 5VRG HIS A 516 UNP P23930 EXPRESSION TAG SEQADV 5VRG HIS A 517 UNP P23930 EXPRESSION TAG SEQADV 5VRG HIS A 518 UNP P23930 EXPRESSION TAG SEQADV 5VRG HIS A 519 UNP P23930 EXPRESSION TAG SEQADV 5VRG HIS A 520 UNP P23930 EXPRESSION TAG SEQRES 1 A 522 MET GLY SER ALA PHE ALA SER LEU ILE GLU ARG GLN ARG SEQRES 2 A 522 ILE ARG LEU LEU LEU ALA LEU LEU PHE GLY ALA CYS GLY SEQRES 3 A 522 THR LEU ALA PHE SER PRO TYR ASP VAL TRP PRO ALA ALA SEQRES 4 A 522 ILE ILE SER LEU MET GLY LEU GLN ALA LEU THR PHE ASN SEQRES 5 A 522 ARG ARG PRO LEU GLN SER ALA ALA ILE GLY PHE CYS TRP SEQRES 6 A 522 GLY PHE GLY LEU PHE GLY SER GLY ILE ASN TRP VAL TYR SEQRES 7 A 522 VAL SER ILE ALA THR PHE GLY GLY MET PRO GLY PRO VAL SEQRES 8 A 522 ASN ILE PHE LEU VAL VAL LEU LEU ALA ALA TYR LEU SER SEQRES 9 A 522 LEU TYR THR GLY LEU PHE ALA GLY VAL LEU SER ARG LEU SEQRES 10 A 522 TRP PRO LYS THR THR TRP LEU ARG VAL ALA ILE ALA ALA SEQRES 11 A 522 PRO ALA LEU TRP GLN VAL THR GLU PHE LEU ARG GLY TRP SEQRES 12 A 522 VAL LEU THR GLY PHE PRO TRP LEU GLN PHE GLY TYR SER SEQRES 13 A 522 GLN ILE ASP GLY PRO LEU LYS GLY LEU ALA PRO ILE MET SEQRES 14 A 522 GLY VAL GLU ALA ILE ASN PHE LEU LEU MET MET VAL SER SEQRES 15 A 522 GLY LEU LEU ALA LEU ALA LEU VAL LYS ARG ASN TRP ARG SEQRES 16 A 522 PRO LEU VAL VAL ALA VAL VAL LEU PHE ALA LEU PRO PHE SEQRES 17 A 522 PRO LEU ARG TYR ILE GLN TRP PHE THR PRO GLN PRO GLU SEQRES 18 A 522 LYS THR ILE GLN VAL SER MET VAL GLN GLY ASP ILE PRO SEQRES 19 A 522 GLN SER LEU LYS TRP ASP GLU GLY GLN LEU LEU ASN THR SEQRES 20 A 522 LEU LYS ILE TYR TYR ASN ALA THR ALA PRO LEU MET GLY SEQRES 21 A 522 LYS SER SER LEU ILE ILE TRP PRO GLU SER ALA ILE THR SEQRES 22 A 522 ASP LEU GLU ILE ASN GLN GLN PRO PHE LEU LYS ALA LEU SEQRES 23 A 522 ASP GLY GLU LEU ARG ASP LYS GLY SER SER LEU VAL THR SEQRES 24 A 522 GLY ILE VAL ASP ALA ARG LEU ASN LYS GLN ASN ARG TYR SEQRES 25 A 522 ASP THR TYR ASN THR ILE ILE THR LEU GLY LYS GLY ALA SEQRES 26 A 522 PRO TYR SER TYR GLU SER ALA ASP ARG TYR ASN LYS ASN SEQRES 27 A 522 HIS LEU VAL PRO PHE GLY GLU PHE VAL PRO LEU GLU SER SEQRES 28 A 522 ILE LEU ARG PRO LEU ALA PRO PHE PHE ASP LEU PRO MET SEQRES 29 A 522 SER SER PHE SER ARG GLY PRO TYR ILE GLN PRO PRO LEU SEQRES 30 A 522 SER ALA ASN GLY ILE GLU LEU THR ALA ALA ILE CYS TYR SEQRES 31 A 522 GLU ILE ILE LEU GLY GLU GLN VAL ARG ASP ASN PHE ARG SEQRES 32 A 522 PRO ASP THR ASP TYR LEU LEU THR ILE SER ASN ASP ALA SEQRES 33 A 522 TRP PHE GLY LYS SER ILE GLY PRO TRP GLN HIS PHE GLN SEQRES 34 A 522 MET ALA ARG MET ARG ALA LEU GLU LEU ALA ARG PRO LEU SEQRES 35 A 522 LEU ARG SER THR ASN ASN GLY ILE THR ALA VAL ILE GLY SEQRES 36 A 522 PRO GLN GLY GLU ILE GLN ALA MET ILE PRO GLN PHE THR SEQRES 37 A 522 ARG GLU VAL LEU THR THR ASN VAL THR PRO THR THR GLY SEQRES 38 A 522 LEU THR PRO TYR ALA ARG THR GLY ASN TRP PRO LEU TRP SEQRES 39 A 522 VAL LEU THR ALA LEU PHE GLY PHE ALA ALA VAL LEU MET SEQRES 40 A 522 SER LEU ARG GLN ARG ARG LYS GLY ASN SER HIS HIS HIS SEQRES 41 A 522 HIS HIS HET OLC A 601 25 HET LNK A 602 5 HET PLM A 603 18 HET PLM A 604 18 HET PLM A 605 18 HET PLM A 606 18 HET PLM A 607 16 HET CL A 608 1 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM LNK PENTANE HETNAM PLM PALMITIC ACID HETNAM CL CHLORIDE ION HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 OLC C21 H40 O4 FORMUL 3 LNK C5 H12 FORMUL 4 PLM 5(C16 H32 O2) FORMUL 9 CL CL 1- FORMUL 10 HOH *146(H2 O) HELIX 1 AA1 ARG A 9 THR A 25 1 17 HELIX 2 AA2 LEU A 26 PHE A 28 5 3 HELIX 3 AA3 TRP A 34 THR A 48 1 15 HELIX 4 AA4 ARG A 52 ILE A 72 1 21 HELIX 5 AA5 TRP A 74 GLY A 83 1 10 HELIX 6 AA6 GLY A 87 TRP A 116 1 30 HELIX 7 AA7 THR A 120 ILE A 126 1 7 HELIX 8 AA8 ILE A 126 GLY A 140 1 15 HELIX 9 AA9 TRP A 141 GLY A 145 5 5 HELIX 10 AB1 GLN A 150 ILE A 156 5 7 HELIX 11 AB2 LEU A 160 GLY A 162 5 3 HELIX 12 AB3 LEU A 163 GLY A 168 1 6 HELIX 13 AB4 GLY A 168 LYS A 189 1 22 HELIX 14 AB5 ASN A 191 LEU A 204 1 14 HELIX 15 AB6 PRO A 205 ILE A 211 5 7 HELIX 16 AB7 PRO A 218 THR A 221 5 4 HELIX 17 AB8 PRO A 232 TRP A 237 1 6 HELIX 18 AB9 GLN A 241 ALA A 254 1 14 HELIX 19 AC1 PRO A 255 MET A 257 5 3 HELIX 20 AC2 GLN A 277 LYS A 291 1 15 HELIX 21 AC3 TYR A 388 ILE A 391 5 4 HELIX 22 AC4 LEU A 392 PHE A 400 1 9 HELIX 23 AC5 ASN A 412 GLY A 417 5 6 HELIX 24 AC6 ILE A 420 ALA A 437 1 18 HELIX 25 AC7 THR A 481 GLY A 487 1 7 HELIX 26 AC8 ASN A 488 SER A 506 1 19 SHEET 1 AA1 2 THR A 215 PRO A 216 0 SHEET 2 AA1 2 THR A 477 THR A 478 -1 O THR A 478 N THR A 215 SHEET 1 AA2 6 ARG A 332 ASN A 334 0 SHEET 2 AA2 6 TYR A 310 GLY A 320 -1 N ILE A 316 O TYR A 333 SHEET 3 AA2 6 SER A 294 LEU A 304 -1 N ARG A 303 O ASP A 311 SHEET 4 AA2 6 LEU A 262 LEU A 273 1 N ILE A 263 O VAL A 296 SHEET 5 AA2 6 ILE A 222 GLN A 228 1 N SER A 225 O LEU A 262 SHEET 6 AA2 6 GLU A 468 VAL A 474 -1 O THR A 472 N VAL A 224 SHEET 1 AA3 6 LEU A 375 ALA A 377 0 SHEET 2 AA3 6 ILE A 380 ILE A 386 -1 O ILE A 380 N ALA A 377 SHEET 3 AA3 6 TYR A 406 SER A 411 1 O LEU A 408 N THR A 383 SHEET 4 AA3 6 LEU A 440 THR A 444 1 O LEU A 441 N LEU A 407 SHEET 5 AA3 6 ALA A 450 ILE A 452 -1 O ILE A 452 N LEU A 440 SHEET 6 AA3 6 ILE A 458 MET A 461 -1 O ALA A 460 N VAL A 451 CISPEP 1 SER A 29 PRO A 30 0 2.56 SITE 1 AC1 7 ILE A 79 TRP A 237 GLY A 342 GLU A 343 SITE 2 AC1 7 PHE A 365 TRP A 415 PLM A 607 SITE 1 AC2 3 LEU A 143 PRO A 346 LEU A 347 SITE 1 AC3 8 LEU A 19 ALA A 22 CYS A 23 THR A 25 SITE 2 AC3 8 LEU A 26 TYR A 31 SER A 70 ASN A 73 SITE 1 AC4 7 LEU A 54 LEU A 103 LEU A 107 TYR A 210 SITE 2 AC4 7 GLN A 212 GLN A 455 HOH A 718 SITE 1 AC5 4 PHE A 92 TRP A 121 MET A 178 ARG A 193 SITE 1 AC6 7 ILE A 7 GLU A 8 ARG A 13 ALA A 46 SITE 2 AC6 7 ASN A 50 THR A 119 VAL A 188 SITE 1 AC7 5 LEU A 97 LEU A 143 PHE A 146 PHE A 416 SITE 2 AC7 5 OLC A 601 SITE 1 AC8 3 LYS A 236 TRP A 237 ASN A 412 CRYST1 87.764 158.026 44.763 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022340 0.00000