HEADER HYDROLASE 10-MAY-17 5VRK TITLE CRYSTAL STRUCTURE OF SSOPOX ASA6 MUTANT (F46L-C258A-W263M-I280T) - TITLE 2 OPEN FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLDIALKYLPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PARAOXONASE,SSOPOX,PHOSPHOTRIESTERASE-LIKE LACTONASE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LACTONASE, PHOSPHOTRIESTERASE, MUTANTS, QUORUM SENSING, KEYWDS 2 ORGANOPHOSPHATE, ORGANOPHOSPHOROUS, INSECTICIDES., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HIBLOT,G.GOTTHARD,P.JACQUET,D.DAUDE,C.BERGONZI,E.CHABRIERE,M.ELIAS REVDAT 4 15-NOV-23 5VRK 1 REMARK REVDAT 3 04-OCT-23 5VRK 1 REMARK REVDAT 2 18-AUG-21 5VRK 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 10-JAN-18 5VRK 0 JRNL AUTH P.JACQUET,J.HIBLOT,D.DAUDE,C.BERGONZI,G.GOTTHARD, JRNL AUTH 2 N.ARMSTRONG,E.CHABRIERE,M.ELIAS JRNL TITL RATIONAL ENGINEERING OF A NATIVE HYPERTHERMOSTABLE LACTONASE JRNL TITL 2 INTO A BROAD SPECTRUM PHOSPHOTRIESTERASE. JRNL REF SCI REP V. 7 16745 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29196634 JRNL DOI 10.1038/S41598-017-16841-0 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 115818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 437 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 634 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5480 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5399 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7423 ; 1.278 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12476 ; 1.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 5.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;32.276 ;24.387 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1011 ;13.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 830 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6223 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2665 ; 3.526 ; 1.565 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2664 ; 3.526 ; 1.564 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3378 ; 3.728 ; 2.354 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3379 ; 3.728 ; 2.354 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2815 ; 4.521 ; 2.035 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2815 ; 4.520 ; 2.035 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4040 ; 4.438 ; 2.880 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7151 ; 5.115 ;15.330 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6799 ; 4.650 ;14.378 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10879 ;21.105 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 143 ;32.773 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 11258 ;10.532 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 314 REMARK 3 RESIDUE RANGE : A 401 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4091 19.4464 -7.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0045 REMARK 3 T33: 0.0059 T12: -0.0029 REMARK 3 T13: 0.0048 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1390 L22: 0.1929 REMARK 3 L33: 0.2002 L12: 0.0046 REMARK 3 L13: -0.0301 L23: 0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.0197 S13: 0.0196 REMARK 3 S21: 0.0196 S22: 0.0083 S23: 0.0095 REMARK 3 S31: -0.0276 S32: 0.0084 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 314 REMARK 3 RESIDUE RANGE : B 401 B 408 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5064 -10.7019 -27.3634 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0057 REMARK 3 T33: 0.0092 T12: -0.0015 REMARK 3 T13: 0.0045 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1876 L22: 0.1859 REMARK 3 L33: 0.1468 L12: 0.0125 REMARK 3 L13: -0.0239 L23: 0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0102 S13: -0.0292 REMARK 3 S21: 0.0094 S22: 0.0069 S23: 0.0185 REMARK 3 S31: 0.0186 S32: -0.0198 S33: 0.0151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.440 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2VC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30 % (W/V) PEG 8000 AND 50 MM TRIS REMARK 280 -HCL BUFFER (PH 8), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET B 263 O HOH B 783 1.78 REMARK 500 O HOH A 633 O HOH B 735 1.91 REMARK 500 O HOH A 601 O HOH A 709 2.02 REMARK 500 NH1 ARG A 47 O HOH A 501 2.07 REMARK 500 O HOH A 715 O HOH A 807 2.11 REMARK 500 O HOH A 749 O HOH A 765 2.11 REMARK 500 O HOH A 546 O HOH A 714 2.12 REMARK 500 OE2 GLU A 307 O HOH A 502 2.13 REMARK 500 OE1 GLU B 42 O HOH B 501 2.13 REMARK 500 O HOH A 689 O HOH A 768 2.14 REMARK 500 OE1 GLN A 34 O HOH A 503 2.14 REMARK 500 NZ LYS B 311 O HOH B 502 2.15 REMARK 500 OG SER A 29 O HOH A 504 2.17 REMARK 500 NH1 ARG B 154 OE2 GLU B 188 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 2 -52.55 -179.57 REMARK 500 ARG A 2 -52.55 -178.67 REMARK 500 HIS A 22 89.24 -150.68 REMARK 500 PRO A 67 35.04 -89.82 REMARK 500 ILE A 100 -81.18 -129.34 REMARK 500 ASP A 141 -140.11 -146.32 REMARK 500 ASN A 175 55.78 -140.24 REMARK 500 ASN A 176 2.80 47.19 REMARK 500 ASP A 286 -69.88 -121.89 REMARK 500 LYS A 306 -56.33 -120.51 REMARK 500 LYS A 306 -56.51 -120.51 REMARK 500 ARG B 2 -31.01 -144.15 REMARK 500 ARG B 2 -26.53 -146.37 REMARK 500 HIS B 22 88.95 -151.42 REMARK 500 PRO B 67 34.23 -88.57 REMARK 500 ILE B 100 -81.56 -127.58 REMARK 500 ASP B 141 -139.50 -146.08 REMARK 500 ASP B 286 -69.38 -121.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 221 ASP B 222 -147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 HIS A 24 NE2 102.8 REMARK 620 3 KCX A 137 OQ1 93.4 88.1 REMARK 620 4 ASP A 256 OD1 87.1 89.7 177.8 REMARK 620 5 HOH A 516 O 106.4 150.7 92.5 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 137 OQ2 REMARK 620 2 HIS A 170 ND1 103.7 REMARK 620 3 HIS A 199 NE2 116.5 92.0 REMARK 620 4 EDO A 407 O1 111.8 82.0 131.3 REMARK 620 5 HOH A 516 O 96.9 147.2 101.4 66.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 22 NE2 REMARK 620 2 HIS B 24 NE2 103.3 REMARK 620 3 KCX B 137 OQ1 94.7 89.6 REMARK 620 4 ASP B 256 OD1 86.6 88.3 177.8 REMARK 620 5 HOH B 510 O 108.4 147.9 92.8 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 137 OQ2 REMARK 620 2 HIS B 170 ND1 105.0 REMARK 620 3 HIS B 199 NE2 115.4 91.8 REMARK 620 4 EDO B 408 O1 110.9 85.9 132.6 REMARK 620 5 HOH B 510 O 98.4 145.3 101.1 61.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VRI RELATED DB: PDB REMARK 900 RELATED ID: 5VSA RELATED DB: PDB REMARK 900 RELATED ID: 5W3U RELATED DB: PDB REMARK 900 RELATED ID: 5W3W RELATED DB: PDB REMARK 900 RELATED ID: 5W3Z RELATED DB: PDB DBREF 5VRK A 1 314 UNP Q97VT7 PHP_SULSO 1 314 DBREF 5VRK B 1 314 UNP Q97VT7 PHP_SULSO 1 314 SEQADV 5VRK LEU A 46 UNP Q97VT7 PHE 46 ENGINEERED MUTATION SEQADV 5VRK ALA A 258 UNP Q97VT7 CYS 258 ENGINEERED MUTATION SEQADV 5VRK MET A 263 UNP Q97VT7 TRP 263 ENGINEERED MUTATION SEQADV 5VRK THR A 280 UNP Q97VT7 ILE 280 ENGINEERED MUTATION SEQADV 5VRK LEU B 46 UNP Q97VT7 PHE 46 ENGINEERED MUTATION SEQADV 5VRK ALA B 258 UNP Q97VT7 CYS 258 ENGINEERED MUTATION SEQADV 5VRK MET B 263 UNP Q97VT7 TRP 263 ENGINEERED MUTATION SEQADV 5VRK THR B 280 UNP Q97VT7 ILE 280 ENGINEERED MUTATION SEQRES 1 A 314 MET ARG ILE PRO LEU VAL GLY LYS ASP SER ILE GLU SER SEQRES 2 A 314 LYS ASP ILE GLY PHE THR LEU ILE HIS GLU HIS LEU ARG SEQRES 3 A 314 VAL PHE SER GLU ALA VAL ARG GLN GLN TRP PRO HIS LEU SEQRES 4 A 314 TYR ASN GLU ASP GLU GLU LEU ARG ASN ALA VAL ASN GLU SEQRES 5 A 314 VAL LYS ARG ALA MET GLN PHE GLY VAL LYS THR ILE VAL SEQRES 6 A 314 ASP PRO THR VAL MET GLY LEU GLY ARG ASP ILE ARG PHE SEQRES 7 A 314 MET GLU LYS VAL VAL LYS ALA THR GLY ILE ASN LEU VAL SEQRES 8 A 314 ALA GLY THR GLY ILE TYR ILE TYR ILE ASP LEU PRO PHE SEQRES 9 A 314 TYR PHE LEU ASN ARG SER ILE ASP GLU ILE ALA ASP LEU SEQRES 10 A 314 PHE ILE HIS ASP ILE LYS GLU GLY ILE GLN GLY THR LEU SEQRES 11 A 314 ASN LYS ALA GLY PHE VAL KCX ILE ALA ALA ASP GLU PRO SEQRES 12 A 314 GLY ILE THR LYS ASP VAL GLU LYS VAL ILE ARG ALA ALA SEQRES 13 A 314 ALA ILE ALA ASN LYS GLU THR LYS VAL PRO ILE ILE THR SEQRES 14 A 314 HIS SER ASN ALA HIS ASN ASN THR GLY LEU GLU GLN GLN SEQRES 15 A 314 ARG ILE LEU THR GLU GLU GLY VAL ASP PRO GLY LYS ILE SEQRES 16 A 314 LEU ILE GLY HIS LEU GLY ASP THR ASP ASN ILE ASP TYR SEQRES 17 A 314 ILE LYS LYS ILE ALA ASP LYS GLY SER PHE ILE GLY LEU SEQRES 18 A 314 ASP ARG TYR GLY LEU ASP LEU PHE LEU PRO VAL ASP LYS SEQRES 19 A 314 ARG ASN GLU THR THR LEU ARG LEU ILE LYS ASP GLY TYR SEQRES 20 A 314 SER ASP LYS ILE MET ILE SER HIS ASP TYR ALA CYS THR SEQRES 21 A 314 ILE ASP MET GLY THR ALA LYS PRO GLU TYR LYS PRO LYS SEQRES 22 A 314 LEU ALA PRO ARG TRP SER THR THR LEU ILE PHE GLU ASP SEQRES 23 A 314 THR ILE PRO PHE LEU LYS ARG ASN GLY VAL ASN GLU GLU SEQRES 24 A 314 VAL ILE ALA THR ILE PHE LYS GLU ASN PRO LYS LYS PHE SEQRES 25 A 314 PHE SER SEQRES 1 B 314 MET ARG ILE PRO LEU VAL GLY LYS ASP SER ILE GLU SER SEQRES 2 B 314 LYS ASP ILE GLY PHE THR LEU ILE HIS GLU HIS LEU ARG SEQRES 3 B 314 VAL PHE SER GLU ALA VAL ARG GLN GLN TRP PRO HIS LEU SEQRES 4 B 314 TYR ASN GLU ASP GLU GLU LEU ARG ASN ALA VAL ASN GLU SEQRES 5 B 314 VAL LYS ARG ALA MET GLN PHE GLY VAL LYS THR ILE VAL SEQRES 6 B 314 ASP PRO THR VAL MET GLY LEU GLY ARG ASP ILE ARG PHE SEQRES 7 B 314 MET GLU LYS VAL VAL LYS ALA THR GLY ILE ASN LEU VAL SEQRES 8 B 314 ALA GLY THR GLY ILE TYR ILE TYR ILE ASP LEU PRO PHE SEQRES 9 B 314 TYR PHE LEU ASN ARG SER ILE ASP GLU ILE ALA ASP LEU SEQRES 10 B 314 PHE ILE HIS ASP ILE LYS GLU GLY ILE GLN GLY THR LEU SEQRES 11 B 314 ASN LYS ALA GLY PHE VAL KCX ILE ALA ALA ASP GLU PRO SEQRES 12 B 314 GLY ILE THR LYS ASP VAL GLU LYS VAL ILE ARG ALA ALA SEQRES 13 B 314 ALA ILE ALA ASN LYS GLU THR LYS VAL PRO ILE ILE THR SEQRES 14 B 314 HIS SER ASN ALA HIS ASN ASN THR GLY LEU GLU GLN GLN SEQRES 15 B 314 ARG ILE LEU THR GLU GLU GLY VAL ASP PRO GLY LYS ILE SEQRES 16 B 314 LEU ILE GLY HIS LEU GLY ASP THR ASP ASN ILE ASP TYR SEQRES 17 B 314 ILE LYS LYS ILE ALA ASP LYS GLY SER PHE ILE GLY LEU SEQRES 18 B 314 ASP ARG TYR GLY LEU ASP LEU PHE LEU PRO VAL ASP LYS SEQRES 19 B 314 ARG ASN GLU THR THR LEU ARG LEU ILE LYS ASP GLY TYR SEQRES 20 B 314 SER ASP LYS ILE MET ILE SER HIS ASP TYR ALA CYS THR SEQRES 21 B 314 ILE ASP MET GLY THR ALA LYS PRO GLU TYR LYS PRO LYS SEQRES 22 B 314 LEU ALA PRO ARG TRP SER THR THR LEU ILE PHE GLU ASP SEQRES 23 B 314 THR ILE PRO PHE LEU LYS ARG ASN GLY VAL ASN GLU GLU SEQRES 24 B 314 VAL ILE ALA THR ILE PHE LYS GLU ASN PRO LYS LYS PHE SEQRES 25 B 314 PHE SER MODRES 5VRK KCX A 137 LYS MODIFIED RESIDUE MODRES 5VRK KCX B 137 LYS MODIFIED RESIDUE HET KCX A 137 12 HET KCX B 137 12 HET FE2 A 401 1 HET CO A 402 1 HET GOL A 403 12 HET EDO A 404 8 HET GOL A 405 6 HET GOL A 406 6 HET EDO A 407 4 HET FE2 B 401 1 HET CO B 402 1 HET GOL B 403 6 HET EDO B 404 4 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET EDO B 408 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM FE2 FE (II) ION HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 FE2 2(FE 2+) FORMUL 4 CO 2(CO 2+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 18 HOH *634(H2 O) HELIX 1 AA1 GLU A 12 ILE A 16 5 5 HELIX 2 AA2 SER A 29 TRP A 36 1 8 HELIX 3 AA3 PRO A 37 TYR A 40 5 4 HELIX 4 AA4 ASN A 41 PHE A 59 1 19 HELIX 5 AA5 ASP A 75 GLY A 87 1 13 HELIX 6 AA6 PRO A 103 LEU A 107 5 5 HELIX 7 AA7 SER A 110 GLU A 124 1 15 HELIX 8 AA8 THR A 146 LYS A 164 1 19 HELIX 9 AA9 ASN A 176 GLU A 188 1 13 HELIX 10 AB1 ASP A 191 GLY A 193 5 3 HELIX 11 AB2 HIS A 199 THR A 203 5 5 HELIX 12 AB3 ASN A 205 LYS A 215 1 11 HELIX 13 AB4 PRO A 231 ASP A 245 1 15 HELIX 14 AB5 TYR A 247 ASP A 249 5 3 HELIX 15 AB6 THR A 281 ASP A 286 1 6 HELIX 16 AB7 ASP A 286 ASN A 294 1 9 HELIX 17 AB8 ASN A 297 LYS A 306 1 10 HELIX 18 AB9 LYS A 306 PHE A 313 1 8 HELIX 19 AC1 GLU B 12 ILE B 16 5 5 HELIX 20 AC2 SER B 29 TRP B 36 1 8 HELIX 21 AC3 PRO B 37 TYR B 40 5 4 HELIX 22 AC4 ASN B 41 PHE B 59 1 19 HELIX 23 AC5 ASP B 75 GLY B 87 1 13 HELIX 24 AC6 PRO B 103 LEU B 107 5 5 HELIX 25 AC7 SER B 110 GLU B 124 1 15 HELIX 26 AC8 THR B 146 LYS B 164 1 19 HELIX 27 AC9 ASN B 176 GLU B 188 1 13 HELIX 28 AD1 ASP B 191 GLY B 193 5 3 HELIX 29 AD2 HIS B 199 THR B 203 5 5 HELIX 30 AD3 ASN B 205 LYS B 215 1 11 HELIX 31 AD4 PRO B 231 ASP B 245 1 15 HELIX 32 AD5 TYR B 247 ASP B 249 5 3 HELIX 33 AD6 THR B 281 ASP B 286 1 6 HELIX 34 AD7 ASP B 286 ASN B 294 1 9 HELIX 35 AD8 ASN B 297 LYS B 306 1 10 HELIX 36 AD9 LYS B 306 PHE B 313 1 8 SHEET 1 AA1 2 ILE A 3 LEU A 5 0 SHEET 2 AA1 2 LYS A 8 ILE A 11 -1 O ILE A 11 N ILE A 3 SHEET 1 AA2 3 THR A 19 LEU A 20 0 SHEET 2 AA2 3 THR A 63 ASP A 66 1 O VAL A 65 N LEU A 20 SHEET 3 AA2 3 ASN A 89 ALA A 92 1 O ASN A 89 N ILE A 64 SHEET 1 AA3 6 THR A 94 GLY A 95 0 SHEET 2 AA3 6 VAL A 136 ALA A 139 1 O KCX A 137 N THR A 94 SHEET 3 AA3 6 ILE A 167 HIS A 170 1 O ILE A 168 N VAL A 136 SHEET 4 AA3 6 ILE A 195 ILE A 197 1 O LEU A 196 N THR A 169 SHEET 5 AA3 6 PHE A 218 LEU A 221 1 O PHE A 218 N ILE A 197 SHEET 6 AA3 6 ILE A 251 ILE A 253 1 O MET A 252 N LEU A 221 SHEET 1 AA4 2 ILE B 3 LEU B 5 0 SHEET 2 AA4 2 LYS B 8 ILE B 11 -1 O ILE B 11 N ILE B 3 SHEET 1 AA5 3 THR B 19 LEU B 20 0 SHEET 2 AA5 3 THR B 63 ASP B 66 1 O VAL B 65 N LEU B 20 SHEET 3 AA5 3 ASN B 89 ALA B 92 1 O ASN B 89 N ILE B 64 SHEET 1 AA6 6 THR B 94 ILE B 96 0 SHEET 2 AA6 6 VAL B 136 ALA B 139 1 O KCX B 137 N THR B 94 SHEET 3 AA6 6 ILE B 167 HIS B 170 1 O ILE B 168 N VAL B 136 SHEET 4 AA6 6 ILE B 195 ILE B 197 1 O LEU B 196 N ILE B 167 SHEET 5 AA6 6 PHE B 218 LEU B 221 1 O PHE B 218 N ILE B 197 SHEET 6 AA6 6 ILE B 251 ILE B 253 1 O MET B 252 N LEU B 221 LINK C VAL A 136 N KCX A 137 1555 1555 1.33 LINK C KCX A 137 N AILE A 138 1555 1555 1.33 LINK C KCX A 137 N BILE A 138 1555 1555 1.33 LINK C VAL B 136 N KCX B 137 1555 1555 1.34 LINK C KCX B 137 N AILE B 138 1555 1555 1.33 LINK C KCX B 137 N BILE B 138 1555 1555 1.34 LINK NE2 HIS A 22 FE FE2 A 401 1555 1555 2.04 LINK NE2 HIS A 24 FE FE2 A 401 1555 1555 2.03 LINK OQ1 KCX A 137 FE FE2 A 401 1555 1555 2.11 LINK OQ2 KCX A 137 CO CO A 402 1555 1555 2.04 LINK ND1 HIS A 170 CO CO A 402 1555 1555 2.03 LINK NE2 HIS A 199 CO CO A 402 1555 1555 2.02 LINK OD1 ASP A 256 FE FE2 A 401 1555 1555 2.10 LINK FE FE2 A 401 O HOH A 516 1555 1555 1.98 LINK CO CO A 402 O1 EDO A 407 1555 1555 2.66 LINK CO CO A 402 O HOH A 516 1555 1555 1.84 LINK NE2 HIS B 22 FE FE2 B 401 1555 1555 2.05 LINK NE2 HIS B 24 FE FE2 B 401 1555 1555 2.03 LINK OQ1 KCX B 137 FE FE2 B 401 1555 1555 2.10 LINK OQ2 KCX B 137 CO CO B 402 1555 1555 2.00 LINK ND1 HIS B 170 CO CO B 402 1555 1555 2.01 LINK NE2 HIS B 199 CO CO B 402 1555 1555 2.04 LINK OD1 ASP B 256 FE FE2 B 401 1555 1555 2.14 LINK FE FE2 B 401 O HOH B 510 1555 1555 2.00 LINK CO CO B 402 O1 EDO B 408 1555 1555 2.73 LINK CO CO B 402 O HOH B 510 1555 1555 1.84 SITE 1 AC1 7 HIS A 22 HIS A 24 KCX A 137 ASP A 256 SITE 2 AC1 7 CO A 402 EDO A 407 HOH A 516 SITE 1 AC2 6 KCX A 137 HIS A 170 HIS A 199 FE2 A 401 SITE 2 AC2 6 EDO A 407 HOH A 516 SITE 1 AC3 8 ASN A 160 LYS A 161 LYS A 164 GLY A 189 SITE 2 AC3 8 VAL A 190 ASP A 191 LYS A 194 HOH A 531 SITE 1 AC4 6 LYS A 161 GLU A 162 LYS A 164 HOH A 754 SITE 2 AC4 6 GLU B 162 LYS B 164 SITE 1 AC5 7 ASN A 172 ALA A 173 ASP A 202 ARG A 223 SITE 2 AC5 7 PHE A 229 HOH A 536 HOH A 544 SITE 1 AC6 6 ARG A 77 GLU A 80 THR A 129 HOH A 598 SITE 2 AC6 6 HOH A 735 ARG B 154 SITE 1 AC7 8 HIS A 24 TYR A 97 HIS A 170 ARG A 223 SITE 2 AC7 8 FE2 A 401 CO A 402 HOH A 516 HOH A 519 SITE 1 AC8 7 HIS B 22 HIS B 24 KCX B 137 ASP B 256 SITE 2 AC8 7 CO B 402 EDO B 408 HOH B 510 SITE 1 AC9 6 KCX B 137 HIS B 170 HIS B 199 FE2 B 401 SITE 2 AC9 6 EDO B 408 HOH B 510 SITE 1 AD1 7 ASN B 172 ALA B 173 HIS B 174 ASP B 202 SITE 2 AD1 7 PHE B 229 HOH B 528 HOH B 624 SITE 1 AD2 5 ALA B 173 HIS B 174 ASN B 175 ASN B 176 SITE 2 AD2 5 TYR B 208 SITE 1 AD3 11 LEU B 39 TYR B 40 GLU B 45 THR B 260 SITE 2 AD3 11 ILE B 261 ASP B 262 HOH B 504 HOH B 508 SITE 3 AD3 11 HOH B 564 HOH B 579 HOH B 621 SITE 1 AD4 5 ALA B 213 ASP B 214 TYR B 247 ASP B 249 SITE 2 AD4 5 LYS B 250 SITE 1 AD5 7 ASN B 160 LYS B 164 GLY B 189 VAL B 190 SITE 2 AD5 7 ASP B 191 LYS B 194 HOH B 567 SITE 1 AD6 8 HIS B 24 TYR B 97 HIS B 170 ARG B 223 SITE 2 AD6 8 FE2 B 401 CO B 402 HOH B 510 HOH B 608 CRYST1 49.280 137.200 49.360 90.00 98.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020292 0.000000 0.003106 0.00000 SCALE2 0.000000 0.007289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020495 0.00000