HEADER IMMUNE SYSTEM 11-MAY-17 5VSI TITLE CH1/CKAPPA FAB MUTANT 15.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CH1/CKAPPA FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CH1/CKAPPA FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS BISPECIFIC ANTIBODY, COMPUTATIONAL DESIGN, HEAVY CHAIN/LIGHT CHAIN KEYWDS 2 INTERFACE, CH1/CKAPPA INTERFACE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.HENDLE REVDAT 3 04-OCT-23 5VSI 1 SEQRES REVDAT 2 04-OCT-17 5VSI 1 JRNL REVDAT 1 02-AUG-17 5VSI 0 JRNL AUTH K.J.FRONING,A.LEAVER-FAY,X.WU,S.PHAN,L.GAO,F.HUANG, JRNL AUTH 2 A.PUSTILNIK,M.BACICA,K.HOULIHAN,Q.CHAI,J.R.FITCHETT, JRNL AUTH 3 J.HENDLE,B.KUHLMAN,S.J.DEMAREST JRNL TITL COMPUTATIONAL DESIGN OF A SPECIFIC HEAVY CHAIN/ KAPPA LIGHT JRNL TITL 2 CHAIN INTERFACE FOR EXPRESSING FULLY IGG BISPECIFIC JRNL TITL 3 ANTIBODIES. JRNL REF PROTEIN SCI. V. 26 2021 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28726352 JRNL DOI 10.1002/PRO.3240 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 69649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3636 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3580 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4918 ; 1.424 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 6.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;37.195 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;12.451 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2708 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5VSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE PUBLICATION, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.13950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.13950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 H 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 519 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 13 CD CE NZ REMARK 470 LYS H 23 CD CE NZ REMARK 470 LYS H 65 CD CE NZ REMARK 470 SER H 66 OG REMARK 470 TYR H 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG H 106 CG CD NE CZ NH1 NH2 REMARK 470 SER H 123 OG REMARK 470 GLN L 3 CG CD OE1 NE2 REMARK 470 LYS L 125 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 148 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU H 186 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN H 43 18.18 -149.68 REMARK 500 ASN H 55 -2.93 -142.50 REMARK 500 ASP H 100 177.87 178.86 REMARK 500 ASP H 152 63.20 63.43 REMARK 500 ASN H 212 43.02 39.50 REMARK 500 THR L 50 -46.53 71.34 REMARK 500 ALA L 83 169.73 177.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VR9 RELATED DB: PDB REMARK 900 RELATED ID: 5VSH RELATED DB: PDB DBREF 5VSI H 1 107 PDB 5VSI 5VSI 1 107 DBREF 5VSI H 108 221 UNP Q6GMX6 Q6GMX6_HUMAN 122 235 DBREF 5VSI L 1 106 PDB 5VSI 5VSI 1 106 DBREF 5VSI L 107 212 UNP Q7Z3Y4 Q7Z3Y4_HUMAN 130 235 SEQADV 5VSI ALA H 151 UNP Q6GMX6 LYS 165 ENGINEERED MUTATION SEQADV 5VSI ALA H 187 UNP Q6GMX6 SER 201 ENGINEERED MUTATION SEQADV 5VSI GLU H 217 UNP Q6GMX6 LYS 231 ENGINEERED MUTATION SEQADV 5VSI LYS L 122 UNP Q7Z3Y4 GLU 145 ENGINEERED MUTATION SEQADV 5VSI ARG L 130 UNP Q7Z3Y4 SER 153 ENGINEERED MUTATION SEQADV 5VSI ILE L 175 UNP Q7Z3Y4 SER 198 ENGINEERED MUTATION SEQRES 1 H 221 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR SER HIS TRP MET HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU PHE ASN SEQRES 5 H 221 PRO SER ASN GLY ARG THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 221 SER LYS ALA THR MET THR VAL ASP THR SER THR ASN THR SEQRES 7 H 221 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA SER ARG ASP TYR ASP TYR ASP SEQRES 9 H 221 GLY ARG TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 221 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 221 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 221 ALA ALA LEU GLY CYS LEU VAL ALA ASP TYR PHE PRO GLU SEQRES 13 H 221 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 221 LEU TYR SER LEU ALA SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 221 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 221 LYS PRO SER ASN THR LYS VAL ASP GLU LYS VAL GLU PRO SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS SER ALA SER SEQRES 3 L 212 SER SER VAL THR TYR MET TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 212 GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP THR SER ASN SEQRES 5 L 212 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 212 SER GLY THR ASP TYR THR PHE THR ILE SER SER LEU GLN SEQRES 7 L 212 PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 L 212 SER HIS ILE PHE THR PHE GLY GLN GLY THR LYS VAL GLU SEQRES 9 L 212 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 212 PRO PRO SER ASP LYS GLN LEU LYS SER GLY THR ALA ARG SEQRES 11 L 212 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 212 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 212 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 212 SER THR TYR SER LEU ILE SER THR LEU THR LEU SER LYS SEQRES 15 L 212 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 212 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 212 ASN ARG GLY GLU HET PCA H 1 8 HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET SO4 H 304 5 HET EDO H 305 4 HET EDO L 301 4 HET SO4 L 302 5 HET EDO L 303 4 HET EDO L 304 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PCA C5 H7 N O3 FORMUL 3 SO4 5(O4 S 2-) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 12 HOH *396(H2 O) HELIX 1 AA1 THR H 28 HIS H 32 5 5 HELIX 2 AA2 GLU H 62 LYS H 65 5 4 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 135 LYS H 137 5 3 HELIX 5 AA5 SER H 164 ALA H 166 5 3 HELIX 6 AA6 SER H 195 LEU H 197 5 3 HELIX 7 AA7 LYS H 209 ASN H 212 5 4 HELIX 8 AA8 GLN L 78 ILE L 82 5 5 HELIX 9 AA9 SER L 120 SER L 126 1 7 HELIX 10 AB1 LYS L 182 LYS L 187 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O LEU H 83 N VAL H 18 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA2 6 ALA H 92 TYR H 101 -1 N ALA H 92 O VAL H 117 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 AA2 6 GLU H 46 PHE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA3 4 ALA H 92 TYR H 101 -1 N ALA H 92 O VAL H 117 SHEET 4 AA3 4 TYR H 107 TRP H 111 -1 O PHE H 108 N ASP H 100 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 THR H 139 SER H 140 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O THR H 143 N SER H 140 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 ILE H 203 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AA6 3 THR H 213 LYS H 218 -1 O VAL H 215 N VAL H 206 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O SER L 24 N THR L 5 SHEET 3 AA7 4 ASP L 69 ILE L 74 -1 O PHE L 72 N ILE L 21 SHEET 4 AA7 4 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 101 LYS L 106 1 O GLU L 104 N LEU L 11 SHEET 3 AA8 6 ALA L 83 SER L 91 -1 N ALA L 83 O VAL L 103 SHEET 4 AA8 6 TYR L 31 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 AA8 6 LYS L 44 TYR L 48 -1 O LEU L 46 N TRP L 34 SHEET 6 AA8 6 ASN L 52 LEU L 53 -1 O ASN L 52 N TYR L 48 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 101 LYS L 106 1 O GLU L 104 N LEU L 11 SHEET 3 AA9 4 ALA L 83 SER L 91 -1 N ALA L 83 O VAL L 103 SHEET 4 AA9 4 ILE L 94 PHE L 97 -1 O THR L 96 N GLN L 89 SHEET 1 AB1 4 SER L 113 PHE L 117 0 SHEET 2 AB1 4 THR L 128 PHE L 138 -1 O ASN L 136 N SER L 113 SHEET 3 AB1 4 TYR L 172 SER L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 AB1 4 SER L 158 VAL L 162 -1 N GLN L 159 O THR L 177 SHEET 1 AB2 4 ALA L 152 LEU L 153 0 SHEET 2 AB2 4 LYS L 144 VAL L 149 -1 N VAL L 149 O ALA L 152 SHEET 3 AB2 4 VAL L 190 THR L 196 -1 O GLU L 194 N GLN L 146 SHEET 4 AB2 4 VAL L 204 ASN L 209 -1 O VAL L 204 N VAL L 195 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 87 1555 1555 2.09 SSBOND 4 CYS L 133 CYS L 193 1555 1555 2.08 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 PHE H 154 PRO H 155 0 -8.49 CISPEP 2 GLU H 156 PRO H 157 0 5.66 CISPEP 3 SER L 7 PRO L 8 0 -5.70 CISPEP 4 TYR L 139 PRO L 140 0 5.61 SITE 1 AC1 5 TRP H 33 ARG H 57 ASN H 59 HOH H 436 SITE 2 AC1 5 HIS L 93 SITE 1 AC2 4 TRP H 33 ASN H 52 HOH H 436 HOH H 491 SITE 1 AC3 7 ARG H 38 GLN H 43 LYS H 63 ARG H 87 SITE 2 AC3 7 GLU H 89 HOH H 490 HOH H 544 SITE 1 AC4 7 SER H 169 GLN H 179 SER H 180 HOH H 523 SITE 2 AC4 7 HOH H 534 GLN L 159 LYS L 168 SITE 1 AC5 6 ASN H 163 GLN H 200 THR H 201 HOH H 414 SITE 2 AC5 6 GLU L 160 VAL L 162 SITE 1 AC6 6 LEU H 149 GLN L 159 THR L 177 HOH L 407 SITE 2 AC6 6 HOH L 409 HOH L 472 SITE 1 AC7 3 PRO L 58 SER L 59 HOH L 539 SITE 1 AC8 8 ASN H 55 ARG H 57 TYR H 107 TYR L 31 SITE 2 AC8 8 TYR L 33 TRP L 90 HOH L 404 HOH L 450 SITE 1 AC9 6 GLN L 36 LYS L 38 LYS L 44 GLU L 80 SITE 2 AC9 6 ASP L 81 HOH L 503 CRYST1 94.279 60.610 86.241 90.00 100.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010607 0.000000 0.001982 0.00000 SCALE2 0.000000 0.016499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011796 0.00000 HETATM 1 N PCA H 1 3.218 91.784 16.619 1.00 19.49 N HETATM 2 CA PCA H 1 4.113 90.667 16.867 1.00 20.01 C HETATM 3 CB PCA H 1 4.619 90.912 18.302 1.00 20.41 C HETATM 4 CG PCA H 1 3.865 92.124 18.843 1.00 24.60 C HETATM 5 CD PCA H 1 3.002 92.554 17.680 1.00 24.88 C HETATM 6 OE PCA H 1 2.215 93.489 17.727 1.00 27.89 O HETATM 7 C PCA H 1 3.388 89.346 16.764 1.00 17.69 C HETATM 8 O PCA H 1 2.274 89.198 17.282 1.00 20.49 O