HEADER ANTIVIRAL PROTEIN 11-MAY-17 5VSM TITLE CRYSTAL STRUCTURE OF VIPERIN WITH BOUND [4FE-4S] CLUSTER, 5'- TITLE 2 DEOXYADENOSINE, AND L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 45-362; COMPND 5 SYNONYM: VIPERIN,VIRUS INHIBITORY PROTEIN,ENDOPLASMIC RETICULUM- COMPND 6 ASSOCIATED,INTERFERON-INDUCIBLE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RSAD2, VIG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NICO(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RADICAL, S-ADENOSYLMETHIONINE, IRON-SULFUR CLUSTER, ANTIVIRAL KEYWDS 2 RESPONSE, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.K.FENWICK,Y.LI,P.CRESSWELL,Y.MODIS,S.E.EALICK REVDAT 7 03-APR-24 5VSM 1 REMARK REVDAT 6 13-MAR-24 5VSM 1 LINK REVDAT 5 20-NOV-19 5VSM 1 REMARK REVDAT 4 27-SEP-17 5VSM 1 REMARK REVDAT 3 12-JUL-17 5VSM 1 JRNL REVDAT 2 28-JUN-17 5VSM 1 JRNL REVDAT 1 14-JUN-17 5VSM 0 JRNL AUTH M.K.FENWICK,Y.LI,P.CRESSWELL,Y.MODIS,S.E.EALICK JRNL TITL STRUCTURAL STUDIES OF VIPERIN, AN ANTIVIRAL RADICAL SAM JRNL TITL 2 ENZYME. JRNL REF PROC. NATL. ACAD. SCI. V. 114 6806 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28607080 JRNL DOI 10.1073/PNAS.1705402114 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 68339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5507 - 4.8964 0.96 2843 146 0.1597 0.1723 REMARK 3 2 4.8964 - 3.8871 0.99 2793 143 0.1230 0.1639 REMARK 3 3 3.8871 - 3.3959 0.98 2728 147 0.1330 0.1847 REMARK 3 4 3.3959 - 3.0855 1.00 2749 155 0.1427 0.1760 REMARK 3 5 3.0855 - 2.8644 1.00 2761 143 0.1566 0.1950 REMARK 3 6 2.8644 - 2.6955 0.99 2708 138 0.1581 0.2220 REMARK 3 7 2.6955 - 2.5605 0.99 2724 152 0.1618 0.1890 REMARK 3 8 2.5605 - 2.4491 1.00 2728 137 0.1692 0.1965 REMARK 3 9 2.4491 - 2.3548 1.00 2730 129 0.1598 0.1902 REMARK 3 10 2.3548 - 2.2735 1.00 2754 117 0.1579 0.2039 REMARK 3 11 2.2735 - 2.2025 1.00 2708 152 0.1574 0.2111 REMARK 3 12 2.2025 - 2.1395 0.99 2685 149 0.1591 0.1849 REMARK 3 13 2.1395 - 2.0832 0.98 2643 151 0.1661 0.2191 REMARK 3 14 2.0832 - 2.0324 0.99 2683 144 0.1704 0.1853 REMARK 3 15 2.0324 - 1.9862 1.00 2700 148 0.1793 0.2120 REMARK 3 16 1.9862 - 1.9439 1.00 2731 133 0.1855 0.2401 REMARK 3 17 1.9439 - 1.9050 1.00 2676 139 0.1887 0.2275 REMARK 3 18 1.9050 - 1.8691 1.00 2707 129 0.1947 0.2586 REMARK 3 19 1.8691 - 1.8357 1.00 2689 149 0.1945 0.2314 REMARK 3 20 1.8357 - 1.8046 1.00 2723 135 0.2030 0.2505 REMARK 3 21 1.8046 - 1.7754 0.99 2680 115 0.2239 0.2632 REMARK 3 22 1.7754 - 1.7481 0.97 2622 119 0.2362 0.2704 REMARK 3 23 1.7481 - 1.7224 0.99 2705 139 0.2544 0.2712 REMARK 3 24 1.7224 - 1.7000 0.95 2537 123 0.2727 0.3193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4498 REMARK 3 ANGLE : 1.860 6087 REMARK 3 CHIRALITY : 0.058 646 REMARK 3 PLANARITY : 0.005 787 REMARK 3 DIHEDRAL : 17.867 2716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6033 25.7992 34.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.3331 REMARK 3 T33: 0.2960 T12: 0.0663 REMARK 3 T13: 0.0588 T23: 0.1082 REMARK 3 L TENSOR REMARK 3 L11: 6.1652 L22: 2.2358 REMARK 3 L33: 4.8504 L12: -2.1753 REMARK 3 L13: 2.7062 L23: -1.6306 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.0163 S13: 0.0333 REMARK 3 S21: -0.1132 S22: -0.3011 S23: -0.4298 REMARK 3 S31: 0.3814 S32: 0.8106 S33: 0.1930 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1185 21.4072 43.6811 REMARK 3 T TENSOR REMARK 3 T11: 0.2930 T22: 0.1479 REMARK 3 T33: 0.2195 T12: 0.0542 REMARK 3 T13: 0.0207 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 5.4028 L22: 1.3246 REMARK 3 L33: 4.9537 L12: -0.2425 REMARK 3 L13: 1.6820 L23: -0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: -0.0837 S13: -0.2048 REMARK 3 S21: 0.0695 S22: -0.1125 S23: -0.1652 REMARK 3 S31: 0.4467 S32: 0.3779 S33: 0.1775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0551 33.0245 35.2812 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.1646 REMARK 3 T33: 0.2149 T12: -0.0271 REMARK 3 T13: 0.0005 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.1639 L22: 6.6709 REMARK 3 L33: 8.0845 L12: -4.6696 REMARK 3 L13: 4.5044 L23: -6.3789 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.1790 S13: -0.1509 REMARK 3 S21: 0.0008 S22: 0.1134 S23: 0.3174 REMARK 3 S31: -0.1001 S32: -0.2148 S33: -0.1172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6605 26.3536 40.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.2489 REMARK 3 T33: 0.2873 T12: -0.0900 REMARK 3 T13: -0.0341 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 3.6170 L22: 3.3774 REMARK 3 L33: 7.7480 L12: 0.4384 REMARK 3 L13: -0.7014 L23: -3.3684 REMARK 3 S TENSOR REMARK 3 S11: -0.1996 S12: 0.2853 S13: 0.0185 REMARK 3 S21: -0.5091 S22: 0.3093 S23: 0.4171 REMARK 3 S31: 0.7290 S32: -1.0864 S33: -0.1024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2435 39.1925 37.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.2415 T22: 0.1458 REMARK 3 T33: 0.1958 T12: 0.0264 REMARK 3 T13: -0.0183 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5524 L22: 1.4127 REMARK 3 L33: 7.4001 L12: 0.3568 REMARK 3 L13: 0.5381 L23: -2.9948 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: 0.0875 S13: 0.2198 REMARK 3 S21: 0.0739 S22: 0.1014 S23: -0.0287 REMARK 3 S31: -0.3162 S32: -0.4136 S33: -0.0081 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4817 40.2037 43.0559 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.1655 REMARK 3 T33: 0.1665 T12: 0.0693 REMARK 3 T13: -0.0117 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0777 L22: 7.9714 REMARK 3 L33: 9.2288 L12: 3.8484 REMARK 3 L13: -1.8823 L23: -5.7047 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.2958 S13: 0.0374 REMARK 3 S21: 0.4691 S22: -0.0564 S23: 0.0824 REMARK 3 S31: -0.3737 S32: -0.3825 S33: 0.1212 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3081 39.6920 21.6509 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.2435 REMARK 3 T33: 0.2520 T12: 0.0010 REMARK 3 T13: 0.0331 T23: 0.0911 REMARK 3 L TENSOR REMARK 3 L11: 3.1953 L22: 7.5117 REMARK 3 L33: 8.1682 L12: -2.3682 REMARK 3 L13: -0.4167 L23: 1.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.2525 S13: 0.1449 REMARK 3 S21: -0.5994 S22: -0.2270 S23: -0.4888 REMARK 3 S31: 0.0836 S32: 0.5252 S33: 0.1107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6456 49.0520 39.2303 REMARK 3 T TENSOR REMARK 3 T11: 0.4762 T22: 0.1756 REMARK 3 T33: 0.2746 T12: 0.0787 REMARK 3 T13: -0.0237 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.6176 L22: 4.8899 REMARK 3 L33: 4.4568 L12: -0.7674 REMARK 3 L13: -0.0503 L23: -1.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: -0.1439 S13: 0.3137 REMARK 3 S21: 0.6330 S22: 0.1110 S23: 0.1334 REMARK 3 S31: -0.9662 S32: -0.2034 S33: -0.0099 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0054 36.1629 34.6833 REMARK 3 T TENSOR REMARK 3 T11: 0.2975 T22: 0.4579 REMARK 3 T33: 0.4488 T12: -0.0344 REMARK 3 T13: 0.0044 T23: 0.1113 REMARK 3 L TENSOR REMARK 3 L11: 5.7311 L22: 4.2732 REMARK 3 L33: 3.9587 L12: -4.9787 REMARK 3 L13: -1.1190 L23: 1.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.2689 S12: -0.3251 S13: 0.4704 REMARK 3 S21: 0.2239 S22: 0.0405 S23: -1.0180 REMARK 3 S31: -0.0659 S32: 0.7917 S33: 0.1664 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4881 32.5879 34.7623 REMARK 3 T TENSOR REMARK 3 T11: 0.4283 T22: 0.7982 REMARK 3 T33: 0.6896 T12: -0.0580 REMARK 3 T13: -0.0241 T23: 0.1693 REMARK 3 L TENSOR REMARK 3 L11: 9.3862 L22: 2.6942 REMARK 3 L33: 6.5679 L12: -3.9481 REMARK 3 L13: 0.8065 L23: -2.9057 REMARK 3 S TENSOR REMARK 3 S11: -0.3079 S12: 0.6478 S13: 0.6233 REMARK 3 S21: -0.4789 S22: -0.0752 S23: -0.5780 REMARK 3 S31: -0.4354 S32: 1.3777 S33: 0.3185 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7146 34.5753 -5.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.3343 REMARK 3 T33: 0.2196 T12: -0.1387 REMARK 3 T13: 0.0437 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 4.2216 L22: 4.4691 REMARK 3 L33: 1.3481 L12: 1.7183 REMARK 3 L13: -0.7269 L23: -0.7183 REMARK 3 S TENSOR REMARK 3 S11: -0.2442 S12: 0.4616 S13: -0.4471 REMARK 3 S21: -0.1157 S22: 0.1499 S23: 0.0786 REMARK 3 S31: 0.7385 S32: -0.5089 S33: 0.0769 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5626 31.9822 7.6825 REMARK 3 T TENSOR REMARK 3 T11: 0.3943 T22: 0.3303 REMARK 3 T33: 0.2959 T12: -0.1660 REMARK 3 T13: 0.0598 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 3.1955 L22: 3.8277 REMARK 3 L33: 2.6001 L12: 0.5693 REMARK 3 L13: -0.9658 L23: -0.4027 REMARK 3 S TENSOR REMARK 3 S11: -0.2042 S12: 0.1086 S13: -0.4058 REMARK 3 S21: -0.0167 S22: 0.1282 S23: 0.3739 REMARK 3 S31: 0.8348 S32: -0.5609 S33: -0.0107 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4671 41.4134 10.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.3168 REMARK 3 T33: 0.1900 T12: -0.0828 REMARK 3 T13: 0.0260 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.8891 L22: 4.8328 REMARK 3 L33: 3.3681 L12: -1.2538 REMARK 3 L13: 0.0228 L23: -1.7258 REMARK 3 S TENSOR REMARK 3 S11: -0.1104 S12: -0.2142 S13: -0.0480 REMARK 3 S21: 0.3313 S22: 0.1529 S23: 0.3506 REMARK 3 S31: 0.2422 S32: -0.4786 S33: -0.0605 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0729 49.2487 -1.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.2823 REMARK 3 T33: 0.2363 T12: 0.0009 REMARK 3 T13: -0.0043 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.2429 L22: 2.6609 REMARK 3 L33: 6.9902 L12: 0.4225 REMARK 3 L13: -1.4266 L23: -2.0355 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.4271 S13: 0.2434 REMARK 3 S21: -0.1752 S22: 0.1879 S23: -0.0269 REMARK 3 S31: 0.1937 S32: -0.2928 S33: -0.1340 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2298 53.3097 3.7100 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.3080 REMARK 3 T33: 0.3409 T12: 0.0298 REMARK 3 T13: -0.0126 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 3.9321 L22: 4.2044 REMARK 3 L33: 6.4204 L12: -1.2081 REMARK 3 L13: -4.2083 L23: 1.8585 REMARK 3 S TENSOR REMARK 3 S11: 0.1642 S12: 0.4119 S13: 0.6555 REMARK 3 S21: -0.1684 S22: 0.0718 S23: -0.0464 REMARK 3 S31: -0.5200 S32: -0.4300 S33: -0.1880 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5434 48.1958 3.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.2363 REMARK 3 T33: 0.1741 T12: 0.0070 REMARK 3 T13: -0.0197 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 4.0517 L22: 1.4558 REMARK 3 L33: 6.6645 L12: -0.5511 REMARK 3 L13: -4.0332 L23: 0.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.0385 S13: 0.0081 REMARK 3 S21: 0.0674 S22: -0.0027 S23: -0.1828 REMARK 3 S31: 0.0389 S32: 0.2465 S33: 0.0615 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 251 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2461 36.3306 -13.6079 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.3489 REMARK 3 T33: 0.2712 T12: -0.0170 REMARK 3 T13: 0.0885 T23: -0.0893 REMARK 3 L TENSOR REMARK 3 L11: 4.9430 L22: 1.7254 REMARK 3 L33: 8.7155 L12: 0.4652 REMARK 3 L13: 3.1827 L23: -0.3022 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.5311 S13: -0.5899 REMARK 3 S21: -0.2656 S22: 0.0721 S23: -0.0235 REMARK 3 S31: 1.3411 S32: -0.0872 S33: -0.0919 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6577 45.1059 3.2983 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.4919 REMARK 3 T33: 0.2741 T12: 0.0543 REMARK 3 T13: -0.0328 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 3.6351 L22: 3.4423 REMARK 3 L33: 4.4316 L12: -0.1787 REMARK 3 L13: -3.4078 L23: -0.5654 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: -0.3515 S13: 0.0162 REMARK 3 S21: 0.2129 S22: 0.0071 S23: -0.4006 REMARK 3 S31: 0.2814 S32: 1.1120 S33: 0.0354 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8528 27.4892 0.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.6315 T22: 0.2537 REMARK 3 T33: 0.3844 T12: 0.0172 REMARK 3 T13: 0.1053 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 8.0176 L22: 8.8758 REMARK 3 L33: 3.4084 L12: 6.9776 REMARK 3 L13: 0.3832 L23: 0.3227 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.1813 S13: -1.1557 REMARK 3 S21: -0.3284 S22: -0.1312 S23: -0.7105 REMARK 3 S31: 1.0037 S32: 0.1412 S33: 0.1330 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8571 18.1440 1.4963 REMARK 3 T TENSOR REMARK 3 T11: 1.1816 T22: 0.3754 REMARK 3 T33: 0.6201 T12: -0.1242 REMARK 3 T13: 0.1650 T23: -0.1282 REMARK 3 L TENSOR REMARK 3 L11: 5.6377 L22: 7.7675 REMARK 3 L33: 0.6660 L12: 4.0310 REMARK 3 L13: -0.0704 L23: -1.8418 REMARK 3 S TENSOR REMARK 3 S11: -0.3388 S12: 0.8210 S13: -1.0091 REMARK 3 S21: -1.0322 S22: 0.1307 S23: -0.8288 REMARK 3 S31: 1.4630 S32: -0.2148 S33: 0.1924 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 - 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX (1.11.1_2575: 000) REMARK 200 STARTING MODEL: VIPERIN WITH BOUND [4FE-4S] CLUSTER AND S REMARK 200 -ADENOSYLHOMOCYSTEINE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 6.8 - 7.6, 10-30% PEG REMARK 280 MME 2000, 5 MM 5'-DEOXYADENOSINE, AND 10 MM L-METHIONINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.68200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.96950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.63200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.96950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.68200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.63200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 GLN A 48 REMARK 465 PRO A 49 REMARK 465 GLN A 50 REMARK 465 VAL A 51 REMARK 465 ARG A 52 REMARK 465 GLY A 53 REMARK 465 GLU A 54 REMARK 465 LEU A 55 REMARK 465 GLU A 56 REMARK 465 GLU A 57 REMARK 465 THR A 58 REMARK 465 GLN A 59 REMARK 465 GLU A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 GLU A 63 REMARK 465 ASP A 64 REMARK 465 GLY A 65 REMARK 465 ASN A 66 REMARK 465 SER A 67 REMARK 465 THR A 68 REMARK 465 GLN A 69 REMARK 465 ARG A 70 REMARK 465 THR A 71 REMARK 465 THR A 72 REMARK 465 PRO A 73 REMARK 465 GLY A 316 REMARK 465 GLY A 317 REMARK 465 ARG A 318 REMARK 465 LYS A 319 REMARK 465 PHE A 336 REMARK 465 SER A 337 REMARK 465 GLY A 338 REMARK 465 PHE A 339 REMARK 465 ASP A 340 REMARK 465 GLU A 341 REMARK 465 LYS A 342 REMARK 465 MET A 343 REMARK 465 PHE A 344 REMARK 465 LEU A 345 REMARK 465 LYS A 346 REMARK 465 ARG A 347 REMARK 465 GLY A 348 REMARK 465 GLY A 349 REMARK 465 LYS A 350 REMARK 465 TYR A 351 REMARK 465 VAL A 352 REMARK 465 TRP A 353 REMARK 465 SER A 354 REMARK 465 LYS A 355 REMARK 465 ALA A 356 REMARK 465 ASP A 357 REMARK 465 LEU A 358 REMARK 465 LYS A 359 REMARK 465 LEU A 360 REMARK 465 ASP A 361 REMARK 465 TRP A 362 REMARK 465 GLY B 45 REMARK 465 LYS B 46 REMARK 465 GLU B 47 REMARK 465 GLN B 48 REMARK 465 PRO B 49 REMARK 465 GLN B 50 REMARK 465 VAL B 51 REMARK 465 ARG B 52 REMARK 465 GLY B 53 REMARK 465 GLU B 54 REMARK 465 LEU B 55 REMARK 465 GLU B 56 REMARK 465 GLU B 57 REMARK 465 THR B 58 REMARK 465 GLN B 59 REMARK 465 GLU B 60 REMARK 465 THR B 61 REMARK 465 GLN B 62 REMARK 465 GLU B 63 REMARK 465 ASP B 64 REMARK 465 GLY B 65 REMARK 465 ASN B 66 REMARK 465 SER B 67 REMARK 465 THR B 68 REMARK 465 GLN B 69 REMARK 465 ARG B 70 REMARK 465 THR B 71 REMARK 465 THR B 72 REMARK 465 PRO B 73 REMARK 465 VAL B 74 REMARK 465 SER B 75 REMARK 465 GLY B 316 REMARK 465 GLY B 317 REMARK 465 ARG B 318 REMARK 465 LYS B 319 REMARK 465 ASP B 320 REMARK 465 ILE B 334 REMARK 465 LYS B 335 REMARK 465 PHE B 336 REMARK 465 SER B 337 REMARK 465 GLY B 338 REMARK 465 PHE B 339 REMARK 465 ASP B 340 REMARK 465 GLU B 341 REMARK 465 LYS B 342 REMARK 465 MET B 343 REMARK 465 PHE B 344 REMARK 465 LEU B 345 REMARK 465 LYS B 346 REMARK 465 ARG B 347 REMARK 465 GLY B 348 REMARK 465 GLY B 349 REMARK 465 LYS B 350 REMARK 465 TYR B 351 REMARK 465 VAL B 352 REMARK 465 TRP B 353 REMARK 465 SER B 354 REMARK 465 LYS B 355 REMARK 465 ALA B 356 REMARK 465 ASP B 357 REMARK 465 LEU B 358 REMARK 465 LYS B 359 REMARK 465 LEU B 360 REMARK 465 ASP B 361 REMARK 465 TRP B 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 74 CG1 CG2 REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ASP A 320 CG OD1 OD2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 146 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 257 -69.76 -104.22 REMARK 500 GLU B 257 -66.39 -109.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 776 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 793 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 794 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 84 SG REMARK 620 2 SF4 A 401 S2 111.9 REMARK 620 3 SF4 A 401 S3 103.2 109.8 REMARK 620 4 SF4 A 401 S4 121.0 105.8 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 88 SG REMARK 620 2 SF4 A 401 S1 112.8 REMARK 620 3 SF4 A 401 S3 116.0 105.6 REMARK 620 4 SF4 A 401 S4 109.4 106.0 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 91 SG REMARK 620 2 SF4 A 401 S1 116.0 REMARK 620 3 SF4 A 401 S2 114.3 108.8 REMARK 620 4 SF4 A 401 S4 108.6 105.2 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 403 N REMARK 620 2 SF4 A 401 S1 170.3 REMARK 620 3 SF4 A 401 S2 86.1 99.1 REMARK 620 4 SF4 A 401 S3 91.2 95.7 102.0 REMARK 620 5 MET A 403 O 72.5 100.9 156.9 87.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 84 SG REMARK 620 2 SF4 B 401 S2 113.4 REMARK 620 3 SF4 B 401 S3 102.7 109.4 REMARK 620 4 SF4 B 401 S4 118.7 106.3 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 88 SG REMARK 620 2 SF4 B 401 S1 113.0 REMARK 620 3 SF4 B 401 S3 116.3 104.5 REMARK 620 4 SF4 B 401 S4 108.4 108.5 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 91 SG REMARK 620 2 SF4 B 401 S1 115.6 REMARK 620 3 SF4 B 401 S2 113.6 108.2 REMARK 620 4 SF4 B 401 S4 109.4 105.9 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 403 N REMARK 620 2 SF4 B 401 S1 168.9 REMARK 620 3 SF4 B 401 S2 88.4 99.3 REMARK 620 4 SF4 B 401 S3 89.4 96.5 103.5 REMARK 620 5 MET B 403 O 71.8 98.9 157.1 88.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5AD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MET A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5AD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MET B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VSL RELATED DB: PDB DBREF 5VSM A 45 362 UNP Q8CBB9 RSAD2_MOUSE 45 362 DBREF 5VSM B 45 362 UNP Q8CBB9 RSAD2_MOUSE 45 362 SEQADV 5VSM LEU A 55 UNP Q8CBB9 PRO 55 CONFLICT SEQADV 5VSM GLU A 57 UNP Q8CBB9 ASP 57 CONFLICT SEQADV 5VSM ARG A 70 UNP Q8CBB9 PRO 70 CONFLICT SEQADV 5VSM LEU B 55 UNP Q8CBB9 PRO 55 CONFLICT SEQADV 5VSM GLU B 57 UNP Q8CBB9 ASP 57 CONFLICT SEQADV 5VSM ARG B 70 UNP Q8CBB9 PRO 70 CONFLICT SEQRES 1 A 318 GLY LYS GLU GLN PRO GLN VAL ARG GLY GLU LEU GLU GLU SEQRES 2 A 318 THR GLN GLU THR GLN GLU ASP GLY ASN SER THR GLN ARG SEQRES 3 A 318 THR THR PRO VAL SER VAL ASN TYR HIS PHE THR ARG GLN SEQRES 4 A 318 CYS ASN TYR LYS CYS GLY PHE CYS PHE HIS THR ALA LYS SEQRES 5 A 318 THR SER PHE VAL LEU PRO LEU GLU GLU ALA LYS ARG GLY SEQRES 6 A 318 LEU LEU LEU LEU LYS GLN ALA GLY LEU GLU LYS ILE ASN SEQRES 7 A 318 PHE SER GLY GLY GLU PRO PHE LEU GLN ASP ARG GLY GLU SEQRES 8 A 318 TYR LEU GLY LYS LEU VAL ARG PHE CYS LYS GLU GLU LEU SEQRES 9 A 318 ALA LEU PRO SER VAL SER ILE VAL SER ASN GLY SER LEU SEQRES 10 A 318 ILE ARG GLU ARG TRP PHE LYS ASP TYR GLY GLU TYR LEU SEQRES 11 A 318 ASP ILE LEU ALA ILE SER CYS ASP SER PHE ASP GLU GLN SEQRES 12 A 318 VAL ASN ALA LEU ILE GLY ARG GLY GLN GLY LYS LYS ASN SEQRES 13 A 318 HIS VAL GLU ASN LEU GLN LYS LEU ARG ARG TRP CYS ARG SEQRES 14 A 318 ASP TYR LYS VAL ALA PHE LYS ILE ASN SER VAL ILE ASN SEQRES 15 A 318 ARG PHE ASN VAL ASP GLU ASP MET ASN GLU HIS ILE LYS SEQRES 16 A 318 ALA LEU SER PRO VAL ARG TRP LYS VAL PHE GLN CYS LEU SEQRES 17 A 318 LEU ILE GLU GLY GLU ASN SER GLY GLU ASP ALA LEU ARG SEQRES 18 A 318 GLU ALA GLU ARG PHE LEU ILE SER ASN GLU GLU PHE GLU SEQRES 19 A 318 THR PHE LEU GLU ARG HIS LYS GLU VAL SER CYS LEU VAL SEQRES 20 A 318 PRO GLU SER ASN GLN LYS MET LYS ASP SER TYR LEU ILE SEQRES 21 A 318 LEU ASP GLU TYR MET ARG PHE LEU ASN CYS THR GLY GLY SEQRES 22 A 318 ARG LYS ASP PRO SER LYS SER ILE LEU ASP VAL GLY VAL SEQRES 23 A 318 GLU GLU ALA ILE LYS PHE SER GLY PHE ASP GLU LYS MET SEQRES 24 A 318 PHE LEU LYS ARG GLY GLY LYS TYR VAL TRP SER LYS ALA SEQRES 25 A 318 ASP LEU LYS LEU ASP TRP SEQRES 1 B 318 GLY LYS GLU GLN PRO GLN VAL ARG GLY GLU LEU GLU GLU SEQRES 2 B 318 THR GLN GLU THR GLN GLU ASP GLY ASN SER THR GLN ARG SEQRES 3 B 318 THR THR PRO VAL SER VAL ASN TYR HIS PHE THR ARG GLN SEQRES 4 B 318 CYS ASN TYR LYS CYS GLY PHE CYS PHE HIS THR ALA LYS SEQRES 5 B 318 THR SER PHE VAL LEU PRO LEU GLU GLU ALA LYS ARG GLY SEQRES 6 B 318 LEU LEU LEU LEU LYS GLN ALA GLY LEU GLU LYS ILE ASN SEQRES 7 B 318 PHE SER GLY GLY GLU PRO PHE LEU GLN ASP ARG GLY GLU SEQRES 8 B 318 TYR LEU GLY LYS LEU VAL ARG PHE CYS LYS GLU GLU LEU SEQRES 9 B 318 ALA LEU PRO SER VAL SER ILE VAL SER ASN GLY SER LEU SEQRES 10 B 318 ILE ARG GLU ARG TRP PHE LYS ASP TYR GLY GLU TYR LEU SEQRES 11 B 318 ASP ILE LEU ALA ILE SER CYS ASP SER PHE ASP GLU GLN SEQRES 12 B 318 VAL ASN ALA LEU ILE GLY ARG GLY GLN GLY LYS LYS ASN SEQRES 13 B 318 HIS VAL GLU ASN LEU GLN LYS LEU ARG ARG TRP CYS ARG SEQRES 14 B 318 ASP TYR LYS VAL ALA PHE LYS ILE ASN SER VAL ILE ASN SEQRES 15 B 318 ARG PHE ASN VAL ASP GLU ASP MET ASN GLU HIS ILE LYS SEQRES 16 B 318 ALA LEU SER PRO VAL ARG TRP LYS VAL PHE GLN CYS LEU SEQRES 17 B 318 LEU ILE GLU GLY GLU ASN SER GLY GLU ASP ALA LEU ARG SEQRES 18 B 318 GLU ALA GLU ARG PHE LEU ILE SER ASN GLU GLU PHE GLU SEQRES 19 B 318 THR PHE LEU GLU ARG HIS LYS GLU VAL SER CYS LEU VAL SEQRES 20 B 318 PRO GLU SER ASN GLN LYS MET LYS ASP SER TYR LEU ILE SEQRES 21 B 318 LEU ASP GLU TYR MET ARG PHE LEU ASN CYS THR GLY GLY SEQRES 22 B 318 ARG LYS ASP PRO SER LYS SER ILE LEU ASP VAL GLY VAL SEQRES 23 B 318 GLU GLU ALA ILE LYS PHE SER GLY PHE ASP GLU LYS MET SEQRES 24 B 318 PHE LEU LYS ARG GLY GLY LYS TYR VAL TRP SER LYS ALA SEQRES 25 B 318 ASP LEU LYS LEU ASP TRP HET SF4 A 401 8 HET 5AD A 402 18 HET MET A 403 9 HET SF4 B 401 8 HET 5AD B 402 18 HET MET B 403 9 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5AD 5'-DEOXYADENOSINE HETNAM MET METHIONINE FORMUL 3 SF4 2(FE4 S4) FORMUL 4 5AD 2(C10 H13 N5 O3) FORMUL 5 MET 2(C5 H11 N O2 S) FORMUL 9 HOH *570(H2 O) HELIX 1 AA1 PRO A 102 GLY A 117 1 16 HELIX 2 AA2 LEU A 130 ARG A 133 5 4 HELIX 3 AA3 GLY A 134 GLU A 147 1 14 HELIX 4 AA4 ARG A 163 GLY A 171 1 9 HELIX 5 AA5 GLU A 172 LEU A 174 5 3 HELIX 6 AA6 ASP A 185 GLY A 193 1 9 HELIX 7 AA7 ASN A 200 LYS A 216 1 17 HELIX 8 AA8 MET A 234 SER A 242 1 9 HELIX 9 AA9 ALA A 267 LEU A 271 5 5 HELIX 10 AB1 SER A 273 HIS A 284 1 12 HELIX 11 AB2 SER A 294 TYR A 302 1 9 HELIX 12 AB3 SER A 324 LYS A 335 1 12 HELIX 13 AB4 PRO B 102 ALA B 116 1 15 HELIX 14 AB5 GLU B 127 ARG B 133 5 7 HELIX 15 AB6 GLY B 134 GLU B 147 1 14 HELIX 16 AB7 ARG B 163 GLY B 171 1 9 HELIX 17 AB8 GLU B 172 LEU B 174 5 3 HELIX 18 AB9 ASP B 185 GLY B 193 1 9 HELIX 19 AC1 ASN B 200 LYS B 216 1 17 HELIX 20 AC2 MET B 234 SER B 242 1 9 HELIX 21 AC3 ALA B 267 LEU B 271 5 5 HELIX 22 AC4 SER B 273 HIS B 284 1 12 HELIX 23 AC5 SER B 294 TYR B 302 1 9 HELIX 24 AC6 SER B 324 ALA B 333 1 10 SHEET 1 AA1 9 LEU A 290 GLU A 293 0 SHEET 2 AA1 9 ARG A 245 GLN A 250 1 N VAL A 248 O GLU A 293 SHEET 3 AA1 9 ALA A 218 ILE A 225 1 N ILE A 225 O PHE A 249 SHEET 4 AA1 9 ILE A 176 SER A 180 1 N LEU A 177 O ALA A 218 SHEET 5 AA1 9 SER A 152 SER A 157 1 N ILE A 155 O ALA A 178 SHEET 6 AA1 9 LYS A 120 SER A 124 1 N PHE A 123 O SER A 154 SHEET 7 AA1 9 SER A 75 HIS A 79 1 N TYR A 78 O ASN A 122 SHEET 8 AA1 9 ILE A 304 LEU A 305 1 O LEU A 305 N ASN A 77 SHEET 9 AA1 9 PHE A 311 LEU A 312 -1 O LEU A 312 N ILE A 304 SHEET 1 AA2 9 LEU B 290 GLU B 293 0 SHEET 2 AA2 9 ARG B 245 GLN B 250 1 N VAL B 248 O GLU B 293 SHEET 3 AA2 9 ALA B 218 ILE B 225 1 N ILE B 225 O PHE B 249 SHEET 4 AA2 9 ILE B 176 SER B 180 1 N LEU B 177 O ALA B 218 SHEET 5 AA2 9 SER B 152 SER B 157 1 N ILE B 155 O ALA B 178 SHEET 6 AA2 9 LYS B 120 SER B 124 1 N PHE B 123 O SER B 154 SHEET 7 AA2 9 ASN B 77 HIS B 79 1 N TYR B 78 O ASN B 122 SHEET 8 AA2 9 ILE B 304 LEU B 305 1 O LEU B 305 N ASN B 77 SHEET 9 AA2 9 PHE B 311 LEU B 312 -1 O LEU B 312 N ILE B 304 LINK SG CYS A 84 FE1 SF4 A 401 1555 1555 2.35 LINK SG CYS A 88 FE2 SF4 A 401 1555 1555 2.38 LINK SG CYS A 91 FE3 SF4 A 401 1555 1555 2.40 LINK FE4 SF4 A 401 N MET A 403 1555 1555 2.37 LINK FE4 SF4 A 401 O MET A 403 1555 1555 2.27 LINK SG CYS B 84 FE1 SF4 B 401 1555 1555 2.37 LINK SG CYS B 88 FE2 SF4 B 401 1555 1555 2.43 LINK SG CYS B 91 FE3 SF4 B 401 1555 1555 2.49 LINK FE4 SF4 B 401 N MET B 403 1555 1555 2.42 LINK FE4 SF4 B 401 O MET B 403 1555 1555 2.34 CISPEP 1 GLY A 125 GLY A 126 0 9.26 CISPEP 2 GLY B 125 GLY B 126 0 8.71 SITE 1 AC1 8 CYS A 84 CYS A 88 CYS A 91 GLY A 126 SITE 2 AC1 8 ASN A 158 ARG A 194 5AD A 402 MET A 403 SITE 1 AC2 13 PHE A 90 PHE A 92 SER A 180 ARG A 194 SITE 2 AC2 13 ASN A 222 VAL A 224 GLN A 250 CYS A 251 SITE 3 AC2 13 LEU A 252 ASN A 258 SF4 A 401 MET A 403 SITE 4 AC2 13 HOH A 580 SITE 1 AC3 11 SER A 124 GLY A 125 GLY A 126 GLU A 127 SITE 2 AC3 11 VAL A 156 SER A 157 ASN A 158 SER A 180 SITE 3 AC3 11 ARG A 194 SF4 A 401 5AD A 402 SITE 1 AC4 9 CYS B 84 CYS B 88 CYS B 91 GLY B 126 SITE 2 AC4 9 ASN B 158 ARG B 194 ARG B 265 5AD B 402 SITE 3 AC4 9 MET B 403 SITE 1 AC5 14 PHE B 90 PHE B 92 SER B 180 ARG B 194 SITE 2 AC5 14 ASN B 222 VAL B 224 PHE B 249 GLN B 250 SITE 3 AC5 14 CYS B 251 LEU B 252 ASN B 258 SF4 B 401 SITE 4 AC5 14 MET B 403 HOH B 634 SITE 1 AC6 12 PHE B 92 SER B 124 GLY B 125 GLY B 126 SITE 2 AC6 12 GLU B 127 VAL B 156 SER B 157 ASN B 158 SITE 3 AC6 12 SER B 180 ARG B 194 SF4 B 401 5AD B 402 CRYST1 59.364 73.264 141.939 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007045 0.00000