HEADER CHAPERONE 12-MAY-17 5VSO TITLE NMR STRUCTURE OF YDJ1 J-DOMAIN, A CYTOSOLIC HSP40 FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST DNAJ PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-70; COMPND 5 SYNONYM: YDJ1, MITOCHONDRIAL PROTEIN IMPORT PROTEIN MAS5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YDJ1, MAS5, YNL064C, N2418, YNL2418C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS J-DOMAIN, J-PROTEIN, DNAJ, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.J.CIESIELSKI,M.TONELLI,W.LEE,G.CORNILESCU,J.L.MARKLEY,B.A.SCHILKE, AUTHOR 2 T.ZIEGELHOFFER,E.A.CRAIG REVDAT 4 14-JUN-23 5VSO 1 REMARK REVDAT 3 01-JAN-20 5VSO 1 REMARK REVDAT 2 15-NOV-17 5VSO 1 JRNL REVDAT 1 01-NOV-17 5VSO 0 JRNL AUTH B.A.SCHILKE,S.J.CIESIELSKI,T.ZIEGELHOFFER,E.KAMIYA, JRNL AUTH 2 M.TONELLI,W.LEE,G.CORNILESCU,J.K.HINES,J.L.MARKLEY,E.A.CRAIG JRNL TITL BROADENING THE FUNCTIONALITY OF A J-PROTEIN/HSP70 MOLECULAR JRNL TITL 2 CHAPERONE SYSTEM. JRNL REF PLOS GENET. V. 13 07084 2017 JRNL REFN ESSN 1553-7404 JRNL PMID 29084221 JRNL DOI 10.1371/JOURNAL.PGEN.1007084 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PONDEROSA-C/S, X-PLOR NIH REMARK 3 AUTHORS : LEE, STARK AND MARKLEY (PONDEROSA-C/S), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STEP WITH EXPLICIT WATER REMARK 3 REFINEMENT REMARK 4 REMARK 4 5VSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227528. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 279; 283 REMARK 210 PH : 7.5; 7.5 REMARK 210 IONIC STRENGTH : 150 NACL; 150 NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : NULL; NULL; NULL; NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HCCH-TOCSY; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D HBHA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; VXRS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, VNMR, NMRPIPE, NMRFAM REMARK 210 -SPARKY 1.41, APES, PINE, PINE- REMARK 210 SPARKY, PONDEROSA-C/S, AUDANA, X- REMARK 210 PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 93.42 62.91 REMARK 500 1 THR A 10 -13.02 76.89 REMARK 500 2 THR A 10 -28.08 71.98 REMARK 500 3 THR A 10 44.60 70.40 REMARK 500 4 GLU A 2 82.43 65.25 REMARK 500 4 LYS A 42 -34.97 -133.50 REMARK 500 5 SER A 5 85.08 67.68 REMARK 500 5 THR A 10 -37.09 71.89 REMARK 500 6 LYS A 42 -30.28 -138.15 REMARK 500 8 GLU A 9 151.72 -44.57 REMARK 500 8 LYS A 42 -34.62 -133.60 REMARK 500 9 GLU A 2 73.07 57.28 REMARK 500 12 VAL A 7 45.05 -103.71 REMARK 500 12 GLU A 9 136.31 -36.11 REMARK 500 12 THR A 10 -36.37 71.97 REMARK 500 13 VAL A 7 70.61 57.75 REMARK 500 14 GLU A 9 141.65 -31.04 REMARK 500 14 THR A 10 -37.03 78.50 REMARK 500 14 LYS A 42 -36.80 -133.54 REMARK 500 17 THR A 10 4.31 56.40 REMARK 500 19 VAL A 7 94.48 63.13 REMARK 500 19 THR A 10 39.55 75.97 REMARK 500 20 VAL A 7 63.88 37.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30293 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF YDJ1 J-DOMAIN, A CYTOSOLIC HSP40 FROM REMARK 900 SACCHAROMYCES CEREVISIAE DBREF 5VSO A 6 75 UNP P25491 MAS5_YEAST 1 70 SEQADV 5VSO GLY A 1 UNP P25491 EXPRESSION TAG SEQADV 5VSO GLU A 2 UNP P25491 EXPRESSION TAG SEQADV 5VSO PHE A 3 UNP P25491 EXPRESSION TAG SEQADV 5VSO GLY A 4 UNP P25491 EXPRESSION TAG SEQADV 5VSO SER A 5 UNP P25491 EXPRESSION TAG SEQRES 1 A 75 GLY GLU PHE GLY SER MET VAL LYS GLU THR LYS PHE TYR SEQRES 2 A 75 ASP ILE LEU GLY VAL PRO VAL THR ALA THR ASP VAL GLU SEQRES 3 A 75 ILE LYS LYS ALA TYR ARG LYS CYS ALA LEU LYS TYR HIS SEQRES 4 A 75 PRO ASP LYS ASN PRO SER GLU GLU ALA ALA GLU LYS PHE SEQRES 5 A 75 LYS GLU ALA SER ALA ALA TYR GLU ILE LEU SER ASP PRO SEQRES 6 A 75 GLU LYS ARG ASP ILE TYR ASP GLN PHE GLY HELIX 1 AA1 THR A 10 GLY A 17 1 8 HELIX 2 AA2 THR A 23 HIS A 39 1 17 HELIX 3 AA3 SER A 45 SER A 63 1 19 HELIX 4 AA4 ASP A 64 GLY A 75 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1