HEADER OXIDOREDUCTASE 21-MAY-17 5VW4 TITLE NICOTINAMIDE SOAK OF Y316S MUTANT OF CORN ROOT FERREDOXIN:NADP+ TITLE 2 REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.18.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOENZYME, HYDRIDE TRANSFER, PHOTOSYNTHESIS, ACTIVE SITE KEYWDS 2 COMPRESSION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KEAN,R.A.CARPENTER,A.R.HALL,P.A.KARPLUS REVDAT 4 04-OCT-23 5VW4 1 LINK REVDAT 3 27-NOV-19 5VW4 1 REMARK REVDAT 2 11-OCT-17 5VW4 1 JRNL REVDAT 1 23-AUG-17 5VW4 0 JRNL AUTH K.M.KEAN,R.A.CARPENTER,V.PANDINI,G.ZANETTI,A.R.HALL,R.FABER, JRNL AUTH 2 A.ALIVERTI,P.A.KARPLUS JRNL TITL HIGH-RESOLUTION STUDIES OF HYDRIDE TRANSFER IN THE JRNL TITL 2 FERREDOXIN:NADP(+) REDUCTASE SUPERFAMILY. JRNL REF FEBS J. V. 284 3302 2017 JRNL REFN ISSN 1742-4658 JRNL PMID 28783258 JRNL DOI 10.1111/FEBS.14190 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 74924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.130 REMARK 3 FREE R VALUE TEST SET COUNT : 7589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0400 - 4.1974 1.00 2710 298 0.1883 0.2041 REMARK 3 2 4.1974 - 3.3318 1.00 2600 282 0.1377 0.1569 REMARK 3 3 3.3318 - 2.9107 1.00 2530 286 0.1392 0.1699 REMARK 3 4 2.9107 - 2.6446 1.00 2517 288 0.1308 0.1731 REMARK 3 5 2.6446 - 2.4550 1.00 2505 262 0.1266 0.1693 REMARK 3 6 2.4550 - 2.3103 1.00 2529 263 0.1154 0.1492 REMARK 3 7 2.3103 - 2.1946 1.00 2494 275 0.1095 0.1571 REMARK 3 8 2.1946 - 2.0990 1.00 2455 290 0.1033 0.1415 REMARK 3 9 2.0990 - 2.0182 1.00 2481 283 0.1042 0.1482 REMARK 3 10 2.0182 - 1.9486 1.00 2489 263 0.1116 0.1558 REMARK 3 11 1.9486 - 1.8877 0.94 2317 251 0.1137 0.1436 REMARK 3 12 1.8877 - 1.8337 0.95 2356 255 0.1138 0.1658 REMARK 3 13 1.8337 - 1.7854 0.94 2276 286 0.1096 0.1769 REMARK 3 14 1.7854 - 1.7419 0.93 2283 281 0.1134 0.1674 REMARK 3 15 1.7419 - 1.7023 0.93 2242 261 0.1207 0.1545 REMARK 3 16 1.7023 - 1.6660 0.92 2269 257 0.1154 0.1524 REMARK 3 17 1.6660 - 1.6327 0.91 2198 251 0.1164 0.1721 REMARK 3 18 1.6327 - 1.6019 0.90 2218 232 0.1212 0.1734 REMARK 3 19 1.6019 - 1.5733 0.88 2170 240 0.1253 0.1732 REMARK 3 20 1.5733 - 1.5466 0.87 2119 236 0.1267 0.1745 REMARK 3 21 1.5466 - 1.5217 0.86 2125 219 0.1348 0.1935 REMARK 3 22 1.5217 - 1.4982 0.85 2081 228 0.1447 0.1914 REMARK 3 23 1.4982 - 1.4762 0.82 1995 232 0.1526 0.1968 REMARK 3 24 1.4762 - 1.4554 0.82 1995 261 0.1556 0.1975 REMARK 3 25 1.4554 - 1.4357 0.83 1940 263 0.1643 0.2296 REMARK 3 26 1.4357 - 1.4171 0.80 1993 196 0.1726 0.2392 REMARK 3 27 1.4171 - 1.3994 0.79 1891 218 0.1753 0.2119 REMARK 3 28 1.3994 - 1.3825 0.78 1936 220 0.1864 0.2356 REMARK 3 29 1.3825 - 1.3664 0.78 1878 209 0.1906 0.2355 REMARK 3 30 1.3664 - 1.3511 0.71 1743 203 0.2002 0.2573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2724 REMARK 3 ANGLE : 1.013 3729 REMARK 3 CHIRALITY : 0.080 386 REMARK 3 PLANARITY : 0.007 488 REMARK 3 DIHEDRAL : 18.733 1062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75008 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 51.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3LO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-24% PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE (PH 6-7), 0.18-0.22 M MAGNESIUM ACETATE, 100 MM REMARK 280 NICOTINAMIDE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.20800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.60400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.60400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.20800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O GLY A 245 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CD CE NZ REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 93 HO4' FAD A 402 1.33 REMARK 500 HG SER A 43 OE2 GLU A 52 1.48 REMARK 500 O HOH A 510 O HOH A 839 1.92 REMARK 500 O HOH A 562 O HOH A 875 1.93 REMARK 500 O HOH A 654 O HOH A 878 2.00 REMARK 500 O HOH A 501 O HOH A 819 2.01 REMARK 500 O HOH A 534 O HOH A 888 2.02 REMARK 500 O HOH A 520 O HOH A 620 2.05 REMARK 500 O HOH A 779 O HOH A 814 2.06 REMARK 500 O HOH A 640 O HOH A 833 2.07 REMARK 500 OD1 ASP A 252 O HOH A 501 2.08 REMARK 500 O HOH A 622 O HOH A 921 2.08 REMARK 500 O HOH A 855 O HOH A 954 2.09 REMARK 500 O HOH A 501 O HOH A 739 2.11 REMARK 500 O HOH A 501 O HOH A 832 2.15 REMARK 500 O HOH A 787 O HOH A 863 2.16 REMARK 500 O HOH A 537 O HOH A 697 2.18 REMARK 500 OG SER A 43 OE2 GLU A 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 127 HZ1 LYS A 146 5665 1.50 REMARK 500 NZ LYS A 125 O HOH A 550 1655 2.17 REMARK 500 O HOH A 961 O HOH A 972 4565 2.19 REMARK 500 OD2 ASP A 127 NZ LYS A 146 5665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 67.00 -154.95 REMARK 500 LYS A 125 99.36 -51.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 978 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 979 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 984 DISTANCE = 7.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 560 O REMARK 620 2 HOH A 566 O 94.4 REMARK 620 3 HOH A 744 O 174.8 85.5 REMARK 620 4 HOH A 808 O 90.6 90.0 84.2 REMARK 620 5 HOH A 907 O 88.9 176.6 91.2 89.1 REMARK 620 6 HOH A 909 O 82.0 92.2 103.2 172.4 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VW3 RELATED DB: PDB REMARK 900 RELATED ID: 5VW2 RELATED DB: PDB REMARK 900 RELATED ID: 5VW5 RELATED DB: PDB REMARK 900 RELATED ID: 5VW6 RELATED DB: PDB REMARK 900 RELATED ID: 5VW8 RELATED DB: PDB REMARK 900 RELATED ID: 5VW7 RELATED DB: PDB REMARK 900 RELATED ID: 5VWB RELATED DB: PDB REMARK 900 RELATED ID: 5VW9 RELATED DB: PDB REMARK 900 RELATED ID: 5VWA RELATED DB: PDB DBREF 5VW4 A 1 316 UNP Q41736 Q41736_MAIZE 12 327 SEQADV 5VW4 SER A 316 UNP Q41736 TYR 327 ENGINEERED MUTATION SEQRES 1 A 316 SER VAL GLN GLN ALA SER ARG SER LYS VAL SER VAL ALA SEQRES 2 A 316 PRO LEU HIS LEU GLU SER ALA LYS GLU PRO PRO LEU ASN SEQRES 3 A 316 THR TYR LYS PRO LYS GLU PRO PHE THR ALA THR ILE VAL SEQRES 4 A 316 SER VAL GLU SER LEU VAL GLY PRO LYS ALA PRO GLY GLU SEQRES 5 A 316 THR CYS HIS ILE VAL ILE ASP HIS GLY GLY ASN VAL PRO SEQRES 6 A 316 TYR TRP GLU GLY GLN SER TYR GLY VAL ILE PRO PRO GLY SEQRES 7 A 316 GLU ASN PRO LYS LYS PRO GLY ALA PRO GLN ASN VAL ARG SEQRES 8 A 316 LEU TYR SER ILE ALA SER THR ARG TYR GLY ASP ASN PHE SEQRES 9 A 316 ASP GLY ARG THR GLY SER LEU CYS VAL ARG ARG ALA VAL SEQRES 10 A 316 TYR TYR ASP PRO GLU THR GLY LYS GLU ASP PRO SER LYS SEQRES 11 A 316 ASN GLY VAL CYS SER ASN PHE LEU CYS ASN SER LYS PRO SEQRES 12 A 316 GLY ASP LYS ILE GLN LEU THR GLY PRO SER GLY LYS ILE SEQRES 13 A 316 MET LEU LEU PRO GLU GLU ASP PRO ASN ALA THR HIS ILE SEQRES 14 A 316 MET ILE ALA THR GLY THR GLY VAL ALA PRO PHE ARG GLY SEQRES 15 A 316 TYR LEU ARG ARG MET PHE MET GLU ASP VAL PRO ASN TYR SEQRES 16 A 316 ARG PHE GLY GLY LEU ALA TRP LEU PHE LEU GLY VAL ALA SEQRES 17 A 316 ASN SER ASP SER LEU LEU TYR ASP GLU GLU PHE THR SER SEQRES 18 A 316 TYR LEU LYS GLN TYR PRO ASP ASN PHE ARG TYR ASP LYS SEQRES 19 A 316 ALA LEU SER ARG GLU GLN LYS ASN ARG SER GLY GLY LYS SEQRES 20 A 316 MET TYR VAL GLN ASP LYS ILE GLU GLU TYR SER ASP GLU SEQRES 21 A 316 ILE PHE LYS LEU LEU ASP GLY GLY ALA HIS ILE TYR PHE SEQRES 22 A 316 CYS GLY LEU LYS GLY MET MET PRO GLY ILE GLN ASP THR SEQRES 23 A 316 LEU LYS LYS VAL ALA GLU ARG ARG GLY GLU SER TRP ASP SEQRES 24 A 316 GLN LYS LEU ALA GLN LEU LYS LYS ASN LYS GLN TRP HIS SEQRES 25 A 316 VAL GLU VAL SER HET MG A 401 1 HET FAD A 402 84 HET NCA A 403 15 HETNAM MG MAGNESIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NCA NICOTINAMIDE FORMUL 2 MG MG 2+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 NCA C6 H6 N2 O FORMUL 5 HOH *484(H2 O) HELIX 1 AA1 PRO A 14 SER A 19 5 6 HELIX 2 AA2 GLY A 132 ASN A 140 1 9 HELIX 3 AA3 VAL A 177 MET A 189 1 13 HELIX 4 AA4 ASN A 209 LEU A 213 5 5 HELIX 5 AA5 TYR A 215 TYR A 226 1 12 HELIX 6 AA6 TYR A 249 TYR A 257 1 9 HELIX 7 AA7 TYR A 257 GLY A 267 1 11 HELIX 8 AA8 MET A 279 GLY A 295 1 17 HELIX 9 AA9 SER A 297 ASN A 308 1 12 SHEET 1 AA1 2 VAL A 10 SER A 11 0 SHEET 2 AA1 2 GLU A 190 ASP A 191 1 O ASP A 191 N VAL A 10 SHEET 1 AA2 6 ARG A 91 SER A 94 0 SHEET 2 AA2 6 SER A 71 ILE A 75 -1 N TYR A 72 O TYR A 93 SHEET 3 AA2 6 LYS A 146 SER A 153 -1 O SER A 153 N SER A 71 SHEET 4 AA2 6 PHE A 34 SER A 43 -1 N PHE A 34 O LEU A 149 SHEET 5 AA2 6 THR A 53 ASP A 59 -1 O ASP A 59 N THR A 37 SHEET 6 AA2 6 THR A 108 ARG A 114 -1 O GLY A 109 N ILE A 58 SHEET 1 AA3 5 PHE A 230 LEU A 236 0 SHEET 2 AA3 5 LEU A 200 VAL A 207 1 N LEU A 203 O ASP A 233 SHEET 3 AA3 5 THR A 167 THR A 173 1 N MET A 170 O TRP A 202 SHEET 4 AA3 5 HIS A 270 LEU A 276 1 O HIS A 270 N ILE A 169 SHEET 5 AA3 5 TRP A 311 SER A 316 1 O GLU A 314 N PHE A 273 SSBOND 1 CYS A 54 CYS A 139 1555 1555 2.05 LINK MG MG A 401 O HOH A 560 1555 1555 2.08 LINK MG MG A 401 O HOH A 566 1555 1555 2.05 LINK MG MG A 401 O HOH A 744 1555 1555 2.03 LINK MG MG A 401 O HOH A 808 1555 1555 2.12 LINK MG MG A 401 O HOH A 907 1555 1555 2.10 LINK MG MG A 401 O HOH A 909 1555 1555 1.92 CISPEP 1 ALA A 13 PRO A 14 0 -3.25 CISPEP 2 GLY A 151 PRO A 152 0 -2.07 SITE 1 AC1 6 HOH A 560 HOH A 566 HOH A 744 HOH A 808 SITE 2 AC1 6 HOH A 907 HOH A 909 SITE 1 AC2 31 ARG A 91 LEU A 92 TYR A 93 SER A 94 SITE 2 AC2 31 CYS A 112 VAL A 113 ARG A 114 ALA A 116 SITE 3 AC2 31 TYR A 118 LYS A 130 ASN A 131 GLY A 132 SITE 4 AC2 31 VAL A 133 CYS A 134 SER A 135 THR A 175 SITE 5 AC2 31 SER A 316 NCA A 403 HOH A 545 HOH A 547 SITE 6 AC2 31 HOH A 548 HOH A 558 HOH A 571 HOH A 588 SITE 7 AC2 31 HOH A 614 HOH A 652 HOH A 655 HOH A 666 SITE 8 AC2 31 HOH A 749 HOH A 782 HOH A 797 SITE 1 AC3 9 SER A 94 THR A 175 GLY A 176 CYS A 274 SITE 2 AC3 9 GLY A 275 GLU A 314 VAL A 315 SER A 316 SITE 3 AC3 9 FAD A 402 CRYST1 58.894 58.894 184.812 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016980 0.009803 0.000000 0.00000 SCALE2 0.000000 0.019606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005411 0.00000